mRNA_E-fasciculatus_F_contig12016.1573.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12016.1573.1
Unique NamemRNA_E-fasciculatus_F_contig12016.1573.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12016.1573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12016contigE-fasciculatus_F_contig12016:8..758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size751
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927710.8214195-UTR-E-fasciculatus_F_contig12016:7..2121622927710.8214195-UTR-E-fasciculatus_F_contig12016:7..212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12016 8..212 +
1695995661.261872-UTR-E-fasciculatus_F_contig12016:7..2121695995661.261872-UTR-E-fasciculatus_F_contig12016:7..212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12016 8..212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927710.8524034-CDS-E-fasciculatus_F_contig12016:212..7581622927710.8524034-CDS-E-fasciculatus_F_contig12016:212..758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12016 213..758 +
1695995661.2813706-CDS-E-fasciculatus_F_contig12016:212..7581695995661.2813706-CDS-E-fasciculatus_F_contig12016:212..758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12016 213..758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12016.1573.1prot_E-fasciculatus_F_contig12016.1573.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12016 213..758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12016.1573.1

>prot_E-fasciculatus_F_contig12016.1573.1 ID=prot_E-fasciculatus_F_contig12016.1573.1|Name=mRNA_E-fasciculatus_F_contig12016.1573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=182bp
MHYPLTSRQTTRSFSPDIYLSGGRRWRVVQTRLLFRHGGGNNRDKNMNDI
HRRKRTQINSQREANAPATFTNSNYLIKRRPIVARNQTLQPPPSTHSQSI
ISGLQTPRGMPSSTSGITSIHSTLARHFCCCDTDTGHSSDRERENITFRQ
ISHTPRFDGTTAPPPLPPPCPCPPGKSRTAK*
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mRNA from alignment at E-fasciculatus_F_contig12016:8..758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12016.1573.1 ID=mRNA_E-fasciculatus_F_contig12016.1573.1|Name=mRNA_E-fasciculatus_F_contig12016.1573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=751bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12016:8..758+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGCATCAATGCCTCCCTTCACCCCTTGTCTGAAGCACGACGCCCCCCA
CTTCCCTGGTATGTAACCGTCGGCAACCAAGCACTCCTCCACCCACGAGG
AAACAACAGGCACAAACACCAATAAACCGTAGCAACGCTATATTGTAGGG
GTTTCCCGCGTACTACCCGCGCGCTCTGATACCTTACCGCTGCCGCGCAC
AGGGTATGCATTACCCGCTCACAAGCCGTCAAACAACACGGTCTTTTTCC
CCCGATATTTATTTATCCGGGGGCAGGAGATGGAGGGTGGTGCAAACGAG
ACTGCTGTTTCGACACGGCGGCGGAAATAATCGAGACAAGAACATGAATG
ACATACATCGCAGAAAAAGGACCCAGATCAATTCGCAGAGAGAGGCCAAC
GCACCTGCAACCTTCACAAACTCAAACTATCTAATCAAACGTAGACCCAT
CGTCGCCCGCAACCAAACTCTGCAACCTCCCCCGTCAACACACAGTCAGT
CAATCATCAGTGGCTTGCAGACACCCCGCGGCATGCCATCCTCGACGTCG
GGCATCACATCCATCCACTCGACTCTGGCGAGACACTTTTGTTGTTGTGA
CACCGATACCGGCCACAGCAGCGACCGAGAGAGGGAGAACATAACCTTCC
GACAAATAAGTCATACTCCACGTTTCGATGGCACCACGGCGCCACCACCA
CTCCCCCCCCCATGCCCCTGCCCCCCGGGCAAAAGCCGGACGGCCAAATA
G
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12016:8..758+

>mRNA_E-fasciculatus_F_contig12016.1573.1 ID=mRNA_E-fasciculatus_F_contig12016.1573.1|Name=mRNA_E-fasciculatus_F_contig12016.1573.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12016:8..758+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATTACCCGCTCACAAGCCGTCAAACAACACGGTCTTTTTCCCCCGA
TATTTATTTATCCGGGGGCAGGAGATGGAGGGTGGTGCAAACGAGACTGC
TGTTTCGACACGGCGGCGGAAATAATCGAGACAAGAACATGAATGACATA
CATCGCAGAAAAAGGACCCAGATCAATTCGCAGAGAGAGGCCAACGCACC
TGCAACCTTCACAAACTCAAACTATCTAATCAAACGTAGACCCATCGTCG
CCCGCAACCAAACTCTGCAACCTCCCCCGTCAACACACAGTCAGTCAATC
ATCAGTGGCTTGCAGACACCCCGCGGCATGCCATCCTCGACGTCGGGCAT
CACATCCATCCACTCGACTCTGGCGAGACACTTTTGTTGTTGTGACACCG
ATACCGGCCACAGCAGCGACCGAGAGAGGGAGAACATAACCTTCCGACAA
ATAAGTCATACTCCACGTTTCGATGGCACCACGGCGCCACCACCACTCCC
CCCCCCATGCCCCTGCCCCCCGGGCAAAAGCCGGACGGCCAAATAGATGC
ATTACCCGCTCACAAGCCGTCAAACAACACGGTCTTTTTCCCCCGATATT
TATTTATCCGGGGGCAGGAGATGGAGGGTGGTGCAAACGAGACTGCTGTT
TCGACACGGCGGCGGAAATAATCGAGACAAGAACATGAATGACATACATC
GCAGAAAAAGGACCCAGATCAATTCGCAGAGAGAGGCCAACGCACCTGCA
ACCTTCACAAACTCAAACTATCTAATCAAACGTAGACCCATCGTCGCCCG
CAACCAAACTCTGCAACCTCCCCCGTCAACACACAGTCAGTCAATCATCA
GTGGCTTGCAGACACCCCGCGGCATGCCATCCTCGACGTCGGGCATCACA
TCCATCCACTCGACTCTGGCGAGACACTTTTGTTGTTGTGACACCGATAC
CGGCCACAGCAGCGACCGAGAGAGGGAGAACATAACCTTCCGACAAATAA
GTCATACTCCACGTTTCGATGGCACCACGGCGCCACCACCACTCCCCCCC
CCATGCCCCTGCCCCCCGGGCAAAAGCCGGACGGCCAAATAG
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