mRNA_E-fasciculatus_F_contig12009.1567.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A6H5L7S7_9PHAE (ABC1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S7_9PHAE) HSP 1 Score: 123 bits (309), Expect = 3.970e-32 Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVSTCEE 216
QLLSTRVDLLSTEYIEELQQLQD+VPGFGGAKAV IIE+ELGAPIDQLFDKFNSTSLAAASLGQ SV CEE
Sbjct: 319 QLLSTRVDLLSTEYIEELQQLQDNVPGFGGAKAVIIIERELGAPIDQLFDKFNSTSLAAASLGQASV-PCEE 389
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: D7FIH0_ECTSI (ABC transporter-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH0_ECTSI) HSP 1 Score: 123 bits (309), Expect = 4.090e-31 Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 195
QLLSTRVDLLSTEYIEELQQLQD+VPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV
Sbjct: 328 QLLSTRVDLLSTEYIEELQQLQDNVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 392
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A835YN99_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN99_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 6.120e-22 Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 195
QL+STR+DLLS EYIEEL++LQDDVPGFG A AV+IIE ELGAPI +L+D FN +AAASLGQV
Sbjct: 106 QLMSTRIDLLSKEYIEELRRLQDDVPGFGKAAAVAIIESELGAPITELYDSFNENHIAAASLGQV 170
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S2R4D5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R4D5_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 3.840e-21 Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVST 207
QL STRVD++ EYI++L+ LQD+VP F G AV IIE+E+G+PI+++FD FN TSLAAASLGQV V+T
Sbjct: 31 QLFSTRVDIVPKEYIDQLKNLQDNVPSFSGDIAVQIIEEEIGSPINEIFDTFNKTSLAAASLGQVHVAT 99
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S1JY90_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JY90_9ALVE) HSP 1 Score: 94.0 bits (232), Expect = 1.030e-20 Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 195
QLLSTR D++ EYI ELQQLQDDVPGFGG KA+ I+EKELG P+ LF+ FN+T +AAASL QV
Sbjct: 181 QLLSTRTDVVPREYIRELQQLQDDVPGFGGKKAIEIVEKELGRPVADLFESFNATPVAAASLAQV 245
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S3PZD1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZD1_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.420e-20 Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVST 207
QL STR+D++ EYIE+L+ LQD+VP F G AVSIIE+ELG PID+LFD F+ TSLAAASLGQV V+T
Sbjct: 394 QLFSTRIDIVPKEYIEQLKSLQDNVPAFSGDLAVSIIERELGKPIDELFDTFDRTSLAAASLGQVHVAT 462
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A482SBS9_9ARCH (AarF/ABC1/UbiB kinase family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS9_9ARCH) HSP 1 Score: 93.2 bits (230), Expect = 1.450e-20 Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVST 207
QLLSTR+D+L E+I++L LQD VPGF G AV IIEKELG PIDQLFD FN T++AAASLGQV ++T
Sbjct: 46 QLLSTRIDVLPREFIDQLVLLQDQVPGFSGDVAVEIIEKELGKPIDQLFDSFNRTAIAAASLGQVHLAT 114
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S1V6V5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6V5_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.940e-20 Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVST 207
QL STR+D+L EYIEEL+ LQD+VP F G A I+E+ELG PID+LFD FN+TSLAAASLGQV ++T
Sbjct: 384 QLFSTRIDILPAEYIEELKLLQDNVPPFSGELAKEIVERELGKPIDELFDTFNTTSLAAASLGQVHIAT 452
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S3EG61_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EG61_9RHOD) HSP 1 Score: 87.8 bits (216), Expect = 2.030e-20 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 195
QLLSTRVD+L TEY+ EL+ LQD VPGF G KAV I+E ELG+ I+ LFD F+ T +AAASLGQV
Sbjct: 31 QLLSTRVDVLPTEYVTELKVLQDKVPGFDGKKAVEIVETELGSSIENLFDAFDETPIAAASLGQV 95
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: B7FY63_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FY63_PHATC) HSP 1 Score: 91.7 bits (226), Expect = 6.570e-20 Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query: 1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSV 201
QL STR+D++ EYIEEL+QLQD+VP F G AV IIE+ELG PIDQLFD+F+ SLAAASLGQV +
Sbjct: 71 QLFSTRIDIVPKEYIEELKQLQDNVPAFSGDLAVRIIEEELGKPIDQLFDEFDRKSLAAASLGQVHI 137 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12009.1567.1 >prot_E-fasciculatus_F_contig12009.1567.1 ID=prot_E-fasciculatus_F_contig12009.1567.1|Name=mRNA_E-fasciculatus_F_contig12009.1567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=75bp QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDback to top mRNA from alignment at E-fasciculatus_F_contig12009:3593..3817+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12009.1567.1 ID=mRNA_E-fasciculatus_F_contig12009.1567.1|Name=mRNA_E-fasciculatus_F_contig12009.1567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=225bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12009:3593..3817+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12009:3593..3817+ >mRNA_E-fasciculatus_F_contig12009.1567.1 ID=mRNA_E-fasciculatus_F_contig12009.1567.1|Name=mRNA_E-fasciculatus_F_contig12009.1567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12009:3593..3817+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |