mRNA_E-fasciculatus_F_contig12009.1567.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12009.1567.1
Unique NamemRNA_E-fasciculatus_F_contig12009.1567.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A6H5L7S7_9PHAE (ABC1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 3.970e-32
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVSTCEE 216
            QLLSTRVDLLSTEYIEELQQLQD+VPGFGGAKAV IIE+ELGAPIDQLFDKFNSTSLAAASLGQ SV  CEE
Sbjct:  319 QLLSTRVDLLSTEYIEELQQLQDNVPGFGGAKAVIIIERELGAPIDQLFDKFNSTSLAAASLGQASV-PCEE 389          
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: D7FIH0_ECTSI (ABC transporter-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH0_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.090e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 195
            QLLSTRVDLLSTEYIEELQQLQD+VPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV
Sbjct:  328 QLLSTRVDLLSTEYIEELQQLQDNVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 392          
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A835YN99_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN99_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.120e-22
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 195
            QL+STR+DLLS EYIEEL++LQDDVPGFG A AV+IIE ELGAPI +L+D FN   +AAASLGQV
Sbjct:  106 QLMSTRIDLLSKEYIEELRRLQDDVPGFGKAAAVAIIESELGAPITELYDSFNENHIAAASLGQV 170          
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S2R4D5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R4D5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.840e-21
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVST 207
            QL STRVD++  EYI++L+ LQD+VP F G  AV IIE+E+G+PI+++FD FN TSLAAASLGQV V+T
Sbjct:   31 QLFSTRVDIVPKEYIDQLKNLQDNVPSFSGDIAVQIIEEEIGSPINEIFDTFNKTSLAAASLGQVHVAT 99          
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S1JY90_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JY90_9ALVE)

HSP 1 Score: 94.0 bits (232), Expect = 1.030e-20
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 195
            QLLSTR D++  EYI ELQQLQDDVPGFGG KA+ I+EKELG P+  LF+ FN+T +AAASL QV
Sbjct:  181 QLLSTRTDVVPREYIRELQQLQDDVPGFGGKKAIEIVEKELGRPVADLFESFNATPVAAASLAQV 245          
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S3PZD1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZD1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.420e-20
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVST 207
            QL STR+D++  EYIE+L+ LQD+VP F G  AVSIIE+ELG PID+LFD F+ TSLAAASLGQV V+T
Sbjct:  394 QLFSTRIDIVPKEYIEQLKSLQDNVPAFSGDLAVSIIERELGKPIDELFDTFDRTSLAAASLGQVHVAT 462          
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A482SBS9_9ARCH (AarF/ABC1/UbiB kinase family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS9_9ARCH)

HSP 1 Score: 93.2 bits (230), Expect = 1.450e-20
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVST 207
            QLLSTR+D+L  E+I++L  LQD VPGF G  AV IIEKELG PIDQLFD FN T++AAASLGQV ++T
Sbjct:   46 QLLSTRIDVLPREFIDQLVLLQDQVPGFSGDVAVEIIEKELGKPIDQLFDSFNRTAIAAASLGQVHLAT 114          
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S1V6V5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6V5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.940e-20
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSVST 207
            QL STR+D+L  EYIEEL+ LQD+VP F G  A  I+E+ELG PID+LFD FN+TSLAAASLGQV ++T
Sbjct:  384 QLFSTRIDILPAEYIEELKLLQDNVPPFSGELAKEIVERELGKPIDELFDTFNTTSLAAASLGQVHIAT 452          
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: A0A7S3EG61_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EG61_9RHOD)

HSP 1 Score: 87.8 bits (216), Expect = 2.030e-20
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQV 195
            QLLSTRVD+L TEY+ EL+ LQD VPGF G KAV I+E ELG+ I+ LFD F+ T +AAASLGQV
Sbjct:   31 QLLSTRVDVLPTEYVTELKVLQDKVPGFDGKKAVEIVETELGSSIENLFDAFDETPIAAASLGQV 95          
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Match: B7FY63_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FY63_PHATC)

HSP 1 Score: 91.7 bits (226), Expect = 6.570e-20
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFDKFNSTSLAAASLGQVSV 201
            QL STR+D++  EYIEEL+QLQD+VP F G  AV IIE+ELG PIDQLFD+F+  SLAAASLGQV +
Sbjct:   71 QLFSTRIDIVPKEYIEELKQLQDNVPAFSGDLAVRIIEEELGKPIDQLFDEFDRKSLAAASLGQVHI 137          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12009.1567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7S7_9PHAE3.970e-3291.67ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIH0_ECTSI4.090e-3198.46ABC transporter-like n=1 Tax=Ectocarpus siliculosu... [more]
A0A835YN99_9STRA6.120e-2273.85ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A0A7S2R4D5_9STRA3.840e-2163.77Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1JY90_9ALVE1.030e-2069.23Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A7S3PZD1_9STRA1.420e-2068.12Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A482SBS9_9ARCH1.450e-2068.12AarF/ABC1/UbiB kinase family protein (Fragment) n=... [more]
A0A7S1V6V5_9STRA1.940e-2066.67Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3EG61_9RHOD2.030e-2067.69Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
B7FY63_PHATC6.570e-2068.66Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12009contigE-fasciculatus_F_contig12009:3593..3817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue5e-26
Seed eggNOG ortholog2880.D7FIH0
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927710.1420875-CDS-E-fasciculatus_F_contig12009:3592..38171622927710.1420875-CDS-E-fasciculatus_F_contig12009:3592..3817Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12009 3593..3817 +
1695995660.9217556-CDS-E-fasciculatus_F_contig12009:3592..38171695995660.9217556-CDS-E-fasciculatus_F_contig12009:3592..3817Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12009 3593..3817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12009.1567.1prot_E-fasciculatus_F_contig12009.1567.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12009 3593..3817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12009.1567.1

>prot_E-fasciculatus_F_contig12009.1567.1 ID=prot_E-fasciculatus_F_contig12009.1567.1|Name=mRNA_E-fasciculatus_F_contig12009.1567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=75bp
QLLSTRVDLLSTEYIEELQQLQDDVPGFGGAKAVSIIEKELGAPIDQLFD
KFNSTSLAAASLGQVSVSTCEEAF*
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mRNA from alignment at E-fasciculatus_F_contig12009:3593..3817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12009.1567.1 ID=mRNA_E-fasciculatus_F_contig12009.1567.1|Name=mRNA_E-fasciculatus_F_contig12009.1567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=225bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12009:3593..3817+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTTGCTGTCTACACGAGTTGACCTTCTGTCCACAGAGTACATCGAGGA GCTTCAGCAGCTCCAGGACGATGTGCCCGGCTTCGGGGGAGCTAAGGCAG TCAGCATCATCGAGAAGGAGCTGGGCGCGCCCATAGATCAACTGTTCGAT AAGTTCAACTCGACGTCGCTCGCCGCCGCCAGTCTCGGCCAGGTCAGTGT CTCCACCTGCGAAGAGGCTTTTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12009:3593..3817+

>mRNA_E-fasciculatus_F_contig12009.1567.1 ID=mRNA_E-fasciculatus_F_contig12009.1567.1|Name=mRNA_E-fasciculatus_F_contig12009.1567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12009:3593..3817+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTTGCTGTCTACACGAGTTGACCTTCTGTCCACAGAGTACATCGAGGA
GCTTCAGCAGCTCCAGGACGATGTGCCCGGCTTCGGGGGAGCTAAGGCAG
TCAGCATCATCGAGAAGGAGCTGGGCGCGCCCATAGATCAACTGTTCGAT
AAGTTCAACTCGACGTCGCTCGCCGCCGCCAGTCTCGGCCAGGTCAGTGT
CTCCACCTGCGAAGAGGCTTTTTGACAGTTGCTGTCTACACGAGTTGACC
TTCTGTCCACAGAGTACATCGAGGAGCTTCAGCAGCTCCAGGACGATGTG
CCCGGCTTCGGGGGAGCTAAGGCAGTCAGCATCATCGAGAAGGAGCTGGG
CGCGCCCATAGATCAACTGTTCGATAAGTTCAACTCGACGTCGCTCGCCG
CCGCCAGTCTCGGCCAGGTCAGTGTCTCCACCTGCGAAGAGGCTTTTTGA
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