mRNA_E-fasciculatus_F_contig12004.1565.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12004.1565.1
Unique NamemRNA_E-fasciculatus_F_contig12004.1565.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12004.1565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12004contigE-fasciculatus_F_contig12004:2926..3449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12004.1565.1prot_E-fasciculatus_F_contig12004.1565.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12004 2926..3401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927709.9921315-CDS-E-fasciculatus_F_contig12004:2925..30721622927709.9921315-CDS-E-fasciculatus_F_contig12004:2925..3072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12004 2926..3072 +
1695995660.8594232-CDS-E-fasciculatus_F_contig12004:2925..30721695995660.8594232-CDS-E-fasciculatus_F_contig12004:2925..3072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12004 2926..3072 +
1622927710.0176334-CDS-E-fasciculatus_F_contig12004:3329..34011622927710.0176334-CDS-E-fasciculatus_F_contig12004:3329..3401Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12004 3330..3401 +
1695995660.8714683-CDS-E-fasciculatus_F_contig12004:3329..34011695995660.8714683-CDS-E-fasciculatus_F_contig12004:3329..3401Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12004 3330..3401 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927710.0379987-UTR-E-fasciculatus_F_contig12004:3401..34491622927710.0379987-UTR-E-fasciculatus_F_contig12004:3401..3449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12004 3402..3449 +
1695995660.88122-UTR-E-fasciculatus_F_contig12004:3401..34491695995660.88122-UTR-E-fasciculatus_F_contig12004:3401..3449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12004 3402..3449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12004.1565.1

>prot_E-fasciculatus_F_contig12004.1565.1 ID=prot_E-fasciculatus_F_contig12004.1565.1|Name=mRNA_E-fasciculatus_F_contig12004.1565.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=73bp
KTLCGEGGAAPSFAGSFELSDQPSPPLRNCGVLVLEEVCTSVWRWDQVLT
RVYMFHIFFLHRTLWLRWFGCG*
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mRNA from alignment at E-fasciculatus_F_contig12004:2926..3449+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12004.1565.1 ID=mRNA_E-fasciculatus_F_contig12004.1565.1|Name=mRNA_E-fasciculatus_F_contig12004.1565.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=524bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12004:2926..3449+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGACTCTTTGCGGGGAAGGTGGGGCAGCTCCTTCTTTCGCCGGTTCTTT
TGAACTTTCGGATCAACCATCCCCACCCTTACGAAATTGTGGTGTGTTGG
TGCTCGAGGAGGTCTGCACAAGCGTCTGGCGATGGGACCAAGTATTGGCA
CTTGTTTTCGTTTGGAAGACACATGTATATTCTCGGTAAGGCCTATAGTA
CTCTCATCGAAAGCGTTTTTCCCCGTTGCGGAACGTGAAAATTGCTTGCG
AGAAACGAAAAGGAACAACATGTCCAAGAGCCCGAGGCATATTATATTGT
TCTCGAGGGAAACGTAGTATGAGGGTTGTCTGATCTCAGAGCCCGCTTGT
TTCGAGTTTCACTGCAACACAAATCGCACTTCGCGGGAAAACGGCTTCCG
AGAGACACGGGTCTACATGTTCCACATCTTTTTTCTTCACAGAACACTGT
GGCTCCGGTGGTTCGGCTGCGGTTAACCTCGTCACTTTGGGTTCTCCTGA
TTGCGCGTTAAATTCCCTACGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12004:2926..3449+

>mRNA_E-fasciculatus_F_contig12004.1565.1 ID=mRNA_E-fasciculatus_F_contig12004.1565.1|Name=mRNA_E-fasciculatus_F_contig12004.1565.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12004:2926..3449+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGACTCTTTGCGGGGAAGGTGGGGCAGCTCCTTCTTTCGCCGGTTCTTT
TGAACTTTCGGATCAACCATCCCCACCCTTACGAAATTGTGGTGTGTTGG
TGCTCGAGGAGGTCTGCACAAGCGTCTGGCGATGGGACCAAGTATTGAAG
ACTCTTTGCGGGGAAGGTGGGGCAGCTCCTTCTTTCGCCGGTTCTTTTGA
ACTTTCGGATCAACCATCCCCACCCTTACGAAATTGTGGTGTGTTGGTGC
TCGAGGAGGTCTGCACAAGCGTCTGGCGATGGGACCAAGTATTGACACGG
GTCTACATGTTCCACATCTTTTTTCTTCACAGAACACTGTGGCTCCGGTG
GTTCGGCTGCGGTTAAACACGGGTCTACATGTTCCACATCTTTTTTCTTC
ACAGAACACTGTGGCTCCGGTGGTTCGGCTGCGGTTAA
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