mRNA_E-fasciculatus_F_contig12003.1564.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12003.1564.1
Unique NamemRNA_E-fasciculatus_F_contig12003.1564.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12003.1564.1 vs. uniprot
Match: D7FTC0_ECTSI (Similar to solute carrier family 35, member F4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC0_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 4.140e-30
Identity = 74/115 (64.35%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:    1 DEKETPGGEEGFCAGEGGEGQTSEGGLYPLEEGGTKTGAPAGAGGRDEEETSEEAGRPLPDEEDRRVPGAENDKWYDVWEEGSAGSGEDDESIDGMDDGGFELEGEGDVVDYDES 345
            DE+ETPGG+ G C GEG  GQTSEGGLYPL                    T EEAG+PLPDEEDRRV  + ND + DVWEEGSAGS EDD SID MDDGGFELEGE DV+DYDES
Sbjct: 1366 DEEETPGGDPGVCTGEGVGGQTSEGGLYPLXXXXXXXXXXXXXXXXXXXXTDEEAGQPLPDEEDRRVHRSGNDNFDDVWEEGSAGSDEDDASIDDMDDGGFELEGEQDVLDYDES 1480
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BLAST of mRNA_E-fasciculatus_F_contig12003.1564.1 vs. uniprot
Match: A0A6H5L3A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A0_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.510e-11
Identity = 52/121 (42.98%), Postives = 57/121 (47.11%), Query Frame = 2 
Query:    5 RRKHRVARRGFAQERGAR------------------------------VKRPRGGCILWRKAAQRRGRLPGQGVETRRKRPKKRADHCPTRRTGGCLGRKTISGTTFGRKVQRAAVKTTSR 277
            R+KH+VA R FAQERGAR                              VK PR GC LWRK A        QG ETRRK P K ADHC  RRTGG LG+          +V RAA+K T R
Sbjct:    2 RKKHQVAIRAFAQERGARGWGRLRGRGGETRXXXXXXXXXXXXXXXXRVKHPREGCALWRKVA--------QGWETRRKHPTKLADHCRRRRTGGSLGQ---------GEVHRAAMKETGR 105
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BLAST of mRNA_E-fasciculatus_F_contig12003.1564.1 vs. uniprot
Match: A0A6H5JLD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.980e-11
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 DEKETPGGEEGFCAGEGGEGQTSEGGLYPLEEGGTKTGAPAGAGG 135
            DE+ETPGG  G C GEGGEGQTSEGGLYPLEEGGT+ GAPA  GG
Sbjct:  365 DEEETPGGHPGVCTGEGGEGQTSEGGLYPLEEGGTEMGAPAEGGG 409
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12003.1564.1 vs. uniprot
Match: A0A6H5JQ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ87_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.220e-11
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:  229 DVWEEGSAGSGEDDESIDGMDDGGFELEGEGDVVDYDES 345
            DVWEEGSAGS EDD SIDGMDD GFELEGE DV+DYDES
Sbjct:   11 DVWEEGSAGSDEDDVSIDGMDDRGFELEGELDVLDYDES 49
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12003.1564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTC0_ECTSI4.140e-3064.35Similar to solute carrier family 35, member F4 n=1... [more]
A0A6H5L3A0_9PHAE1.510e-1142.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLD9_9PHAE1.980e-1180.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ87_9PHAE2.220e-1187.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12003contigE-fasciculatus_F_contig12003:1620..2487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size373
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927709.931253-CDS-E-fasciculatus_F_contig12003:1619..18361622927709.931253-CDS-E-fasciculatus_F_contig12003:1619..1836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12003 1620..1836 +
1695995660.8348916-CDS-E-fasciculatus_F_contig12003:1619..18361695995660.8348916-CDS-E-fasciculatus_F_contig12003:1619..1836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12003 1620..1836 +
1622927709.9479375-CDS-E-fasciculatus_F_contig12003:2332..24871622927709.9479375-CDS-E-fasciculatus_F_contig12003:2332..2487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12003 2333..2487 +
1695995660.8442957-CDS-E-fasciculatus_F_contig12003:2332..24871695995660.8442957-CDS-E-fasciculatus_F_contig12003:2332..2487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12003 2333..2487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12003.1564.1prot_E-fasciculatus_F_contig12003.1564.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12003 1620..2487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12003.1564.1

>prot_E-fasciculatus_F_contig12003.1564.1 ID=prot_E-fasciculatus_F_contig12003.1564.1|Name=mRNA_E-fasciculatus_F_contig12003.1564.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
DEKETPGGEEGFCAGEGGEGQTSEGGLYPLEEGGTKTGAPAGAGGRDEEE
TSEEAGRPLPDEEDRRVPGAENDKWYDVWEEGSAGSGEDDESIDGMDDGG
FELEGEGDVVDYDESSFMCVPCA*
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mRNA from alignment at E-fasciculatus_F_contig12003:1620..2487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12003.1564.1 ID=mRNA_E-fasciculatus_F_contig12003.1564.1|Name=mRNA_E-fasciculatus_F_contig12003.1564.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=868bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12003:1620..2487+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGAGAAGGAAACACCGGGTGGCGAGGAGGGGTTTTGCGCAGGAGAGGG
GGGCGAGGGTCAAACGTCCGAGGGGGGGCTGTATCCTTTGGAGGAAGGCG
GCACAAAGACGGGGGCGCCTGCCGGGGCAGGGGGTAGAGACGAGGAGGAA
ACGTCCGAAGAAGCGGGCCGACCACTGCCCGACGAGGAGGACCGGCGGGT
GCCTGGGGCGGAAAACGGTGAGGGGACGGCAGTTGGGTTCGGTTTCGTGT
CGCCGCGACAGTTGTTTACCCACGACCCACCCAAGAAAAGATAGCTAGAA
ATATCTTGGTGCCGGGACAAAACCCGTCTGTCTGTGCATTGAACACCCCA
TTTGTTGAAGGTGTGTCTAATCCCGTTCCGTTGCTGCGACCGTATGTGTG
TTTCGTAGATAGGTTGTCGTTCATCCACGCCATAAAATGCAAAAGAAGGG
TGCGGGATAAAGGTACTGAAGCGATTTTAACCAGCACCAAAAATGTGTTT
CATCCAGCAGACCCAGTCCATCGACCCACGAATTTTTAGCCACGGCGAAC
CGACAGACCCCCCCGACGTCGCCATAGCGCGGTTTCGTTGTAACGCATGA
GGAACCCTCTCTGGCGTCCCTCGTGTTGCGTGTCCATGTGTCCATCATAA
ACAATACGTGTATCTCTAACACTCAATATTTTTCTGTCGTGACCGCCTCG
ATCTATTTCGTAGATAAGTGGTACGACGTTTGGGAGGAAGGTTCAGCGGG
CAGCGGTGAAGACGACGAGTCGATAGACGGTATGGACGACGGCGGGTTCG
AGCTGGAAGGAGAAGGGGACGTCGTGGACTACGACGAGTCATCATTCATG
TGCGTCCCCTGCGCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12003:1620..2487+

>mRNA_E-fasciculatus_F_contig12003.1564.1 ID=mRNA_E-fasciculatus_F_contig12003.1564.1|Name=mRNA_E-fasciculatus_F_contig12003.1564.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12003:1620..2487+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGAGAAGGAAACACCGGGTGGCGAGGAGGGGTTTTGCGCAGGAGAGGG
GGGCGAGGGTCAAACGTCCGAGGGGGGGCTGTATCCTTTGGAGGAAGGCG
GCACAAAGACGGGGGCGCCTGCCGGGGCAGGGGGTAGAGACGAGGAGGAA
ACGTCCGAAGAAGCGGGCCGACCACTGCCCGACGAGGAGGACCGGCGGGT
GCCTGGGGCGGAAAACGGACGAGAAGGAAACACCGGGTGGCGAGGAGGGG
TTTTGCGCAGGAGAGGGGGGCGAGGGTCAAACGTCCGAGGGGGGGCTGTA
TCCTTTGGAGGAAGGCGGCACAAAGACGGGGGCGCCTGCCGGGGCAGGGG
GTAGAGACGAGGAGGAAACGTCCGAAGAAGCGGGCCGACCACTGCCCGAC
GAGGAGGACCGGCGGGTGCCTGGGGCGGAAAACGATAAGTGGTACGACGT
TTGGGAGGAAGGTTCAGCGGGCAGCGGTGAAGACGACGAGTCGATAGACG
GTATGGACGACGGCGGGTTCGAGCTGGAAGGAGAAGGGGACGTCGTGGAC
TACGACGAGTCATCATTCATGTGCGTCCCCTGCGCGTGAATAAGTGGTAC
GACGTTTGGGAGGAAGGTTCAGCGGGCAGCGGTGAAGACGACGAGTCGAT
AGACGGTATGGACGACGGCGGGTTCGAGCTGGAAGGAGAAGGGGACGTCG
TGGACTACGACGAGTCATCATTCATGTGCGTCCCCTGCGCGTGA
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