mRNA_E-fasciculatus_F_contig12003.1563.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12003.1563.1
Unique NamemRNA_E-fasciculatus_F_contig12003.1563.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12003.1563.1 vs. uniprot
Match: A0A6H5JQ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ87_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.560e-10
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = -2 
Query:    2 DVWEEGSAGSGEDDESIDGMDDGGFELEGEGDVVDYD 112
            DVWEEGSAGS EDD SIDGMDD GFELEGE DV+DYD
Sbjct:   11 DVWEEGSAGSDEDDVSIDGMDDRGFELEGELDVLDYD 47
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BLAST of mRNA_E-fasciculatus_F_contig12003.1563.1 vs. uniprot
Match: D7FTC0_ECTSI (Similar to solute carrier family 35, member F4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC0_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 4.720e-9
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = -2 
Query:    2 DKWYDVWEEGSAGSGEDDESIDGMDDGGFELEGEGDVVDYD 124
            D + DVWEEGSAGS EDD SID MDDGGFELEGE DV+DYD
Sbjct: 1438 DNFDDVWEEGSAGSDEDDASIDDMDDGGFELEGEQDVLDYD 1478
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12003.1563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ87_9PHAE4.560e-1086.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC0_ECTSI4.720e-980.49Similar to solute carrier family 35, member F4 n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12003contigE-fasciculatus_F_contig12003:1398..2455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size439
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12003.1563.1prot_E-fasciculatus_F_contig12003.1563.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12003 1398..2267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927709.8419511-CDS-E-fasciculatus_F_contig12003:1397..15701622927709.8419511-CDS-E-fasciculatus_F_contig12003:1397..1570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12003 1398..1570 -
1695995660.795822-CDS-E-fasciculatus_F_contig12003:1397..15701695995660.795822-CDS-E-fasciculatus_F_contig12003:1397..1570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12003 1398..1570 -
1622927709.8690202-CDS-E-fasciculatus_F_contig12003:2191..22671622927709.8690202-CDS-E-fasciculatus_F_contig12003:2191..2267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12003 2192..2267 -
1695995660.814095-CDS-E-fasciculatus_F_contig12003:2191..22671695995660.814095-CDS-E-fasciculatus_F_contig12003:2191..2267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12003 2192..2267 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927709.883811-UTR-E-fasciculatus_F_contig12003:2267..24551622927709.883811-UTR-E-fasciculatus_F_contig12003:2267..2455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12003 2268..2455 -
1695995660.8254848-UTR-E-fasciculatus_F_contig12003:2267..24551695995660.8254848-UTR-E-fasciculatus_F_contig12003:2267..2455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12003 2268..2455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12003.1563.1

>prot_E-fasciculatus_F_contig12003.1563.1 ID=prot_E-fasciculatus_F_contig12003.1563.1|Name=mRNA_E-fasciculatus_F_contig12003.1563.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp
MMDTWTRNTRDAREGSSCVTTKPRYAHPHTASTVDFCAGWINLCGECHGA
PSPPQKRRSRETQRQRQPYLGWHTPRPRLEDKA
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mRNA from alignment at E-fasciculatus_F_contig12003:1398..2455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12003.1563.1 ID=mRNA_E-fasciculatus_F_contig12003.1563.1|Name=mRNA_E-fasciculatus_F_contig12003.1563.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1058bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12003:1398..2455- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTCGTAGTCCACGACGTCCCCTTCTCCTTCCAGCTCGAACCCGCCGTCG
TCCATACCGTCTATCGACTCGTCGTCTTCACCGCTGCCCGCTGAACCTTC
CTCCCAAACGTCGTACCACTTATCTACGAAATAGATCGAGGCGGTCACGA
CAGAAAAATATTGAGTGTTAGAGATACACGTATTGTTTATGATGGACACA
TGGACACGCAACACGAGGGACGCCAGAGAGGGTTCCTCATGCGTTACAAC
GAAACCGCGCTATGGCGACGTCGGGGGGGTCTGTCGGTTCGCCGTGGCTA
AAAATTCGTGGGTCGATGGACTGGGTCTGCTGGATGAAACACATTTTTGG
TGCTGGTTAAAATCGCTTCAGTACCTTTATCCCGCACCCTTCTTTTGCAT
TTTATGGCGTGGATGAACGACAACCTATCTACGAAACACACATACGGTCG
CAGCAACGGAACGGGATTAGACACACCTTCAACAAATGGGGTGTTCAATG
CACAGACAGACGGGTTTTGTCCCGGCACCAAGATATTTCTAGCTATCTTT
TCTTGGGTGGGTCGTGGGTAAACAACTGTCGCGGCGACACGAAACCGAAC
CCAACTGCCGTCCCCTCACCGTTTTCCGCCCCAGGCACCCGCCGGTCCTC
CTCGTCGGGCAGTGGTCGGCCCGCTTCTTCGGACGTTTCCTCCTCGTCTC
TACCCCCTGCCCCGGCAGGCGCCCCCGTCTTTGTGCCGCCTTCCTCCAAA
GGATACAGCCCCCCCTCGGACGTTTGACCCTCGCCCCCCTCTCCTGCGCA
AAACCCCTCCTCGCCACCCGGTGTTTCCTTCTCGTCGTATCACCATCGGC
GTATCATAAGGGAGATTGGGCAAGAGCCACCACAGCGCACCCACATACAG
CATCAACAGTCGACTTTTGCGCTGGTTGGATAAACCTTTGCGGCGAATGC
CACGGCGCACCGAGCCCCCCCCAAAAACGAAGATCACGAGAAACCCAGCG
GCAGAGGCAGCCATATCTGGGTTGGCACACGCCCAGACCCAGGCTTGAAG
ACAAAGCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12003:1398..2455-

>mRNA_E-fasciculatus_F_contig12003.1563.1 ID=mRNA_E-fasciculatus_F_contig12003.1563.1|Name=mRNA_E-fasciculatus_F_contig12003.1563.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12003:1398..2455- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGACACATGGACACGCAACACGAGGGACGCCAGAGAGGGTTCCTC
ATGCGTTACAACGAAACCGCGCTATGATGATGGACACATGGACACGCAAC
ACGAGGGACGCCAGAGAGGGTTCCTCATGCGTTACAACGAAACCGCGCTA
TGCGCACCCACATACAGCATCAACAGTCGACTTTTGCGCTGGTTGGATAA
ACCTTTGCGGCGAATGCCACGGCGCACCGAGCCCCCCCCAAAAACGAAGA
TCACGAGAAACCCAGCGGCAGAGGCAGCCATATCTGGGTTGGCACACGCC
CAGACCCAGGCTTGAAGACAAAGCTCGCACCCACATACAGCATCAACAGT
CGACTTTTGCGCTGGTTGGATAAACCTTTGCGGCGAATGCCACGGCGCAC
CGAGCCCCCCCCAAAAACGAAGATCACGAGAAACCCAGCGGCAGAGGCAG
CCATATCTGGGTTGGCACACGCCCAGACCCAGGCTTGAAGACAAAGCT
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