mRNA_E-fasciculatus_F_contig12.1556.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12.1556.1
Unique NamemRNA_E-fasciculatus_F_contig12.1556.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12.1556.1 vs. uniprot
Match: A0A6H5L608_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L608_9PHAE)

HSP 1 Score: 390 bits (1003), Expect = 1.810e-128
Identity = 280/347 (80.69%), Postives = 283/347 (81.56%), Query Frame = 1 
Query:    1 VQALLGNLDDTSSTADVLECLAACPQLCSEERRVLAGEMEAITGPLRDWLLEREGGAPPLRGPRSSSQTPPAAPAAAAQPXXXXXXKPASRKGXXXXXXXXXXXXXXXXGESPALPGGEPAXXXXXXXXXXXXXXXXGTKDEVDGEFFTQGRRGEGNRRSARESPELSRVVAHNLVVMLSALHRAPPPDASVDGGLXXXXXXXXXXXXXXXXXXXXXXGVD----KGSRLLAAVSAGGRLAREQDLVFGLAEPLLDACMQVAARRASPQLLGTVVETKAMLRRRLWSSEDPAALERQREEADSDLDAAVPSIKVKSVAVETWGESQVAVGDTVTATITIAREHAPEY 1029
            V+ALL NLDDTSSTADVLECLAACPQLCS ERRVLAGEMEAIT P+RDWLLEREGGAPPLRGP SSS T           XXXXXX       XXXXXXXXXXXXXXXXGESPA   GE                  GTK EVDGEFFTQGRRGEGNRR+ARESPELSRVVAHNLVVMLSALHRAP          XXXXXXXXXXXXXXXXXXXXXX       KGSRLLAAVSAGGRLAREQDLVFGLAEPLLDACMQVAARRASPQLLGTVVETKAMLRRRLWSSEDPAALERQREE D DLDAAVPSIKVKSVAVETWGESQVAVGDTVTATITIAREHAPEY
Sbjct:  218 VKALLSNLDDTSSTADVLECLAACPQLCSAERRVLAGEMEAITDPVRDWLLEREGGAPPLRGPLSSSPT--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGESPAS--GE---------EQSPAAAAAGTKGEVDGEFFTQGRRGEGNRRTARESPELSRVVAHNLVVMLSALHRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGSRLLAAVSAGGRLAREQDLVFGLAEPLLDACMQVAARRASPQLLGTVVETKAMLRRRLWSSEDPAALERQREEVDLDLDAAVPSIKVKSVAVETWGESQVAVGDTVTATITIAREHAPEY 545
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12.1556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L608_9PHAE1.810e-12880.69J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12contigE-fasciculatus_F_contig12:61482..62956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score415.6
Seed ortholog evalue2.2e-113
Seed eggNOG ortholog2880.D8LSY2
KEGG koko:K09537,ko:K09540
KEGG TC3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,map03060,map04141
GOsGO:0001655,GO:0001889,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0010259,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061008,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071944,GO:0072001,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098827
EggNOG free text desc.posttranslational protein targeting to membrane, translocation
EggNOG OGsCOG5407@1,KOG0721@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-26_001850.1
Exons2
Model size1029
Cds size1029
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927708.6210444-CDS-E-fasciculatus_F_contig12:61481..624081622927708.6210444-CDS-E-fasciculatus_F_contig12:61481..62408Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 61482..62408 +
1695995660.087342-CDS-E-fasciculatus_F_contig12:61481..624081695995660.087342-CDS-E-fasciculatus_F_contig12:61481..62408Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 61482..62408 +
1622927708.6350327-CDS-E-fasciculatus_F_contig12:62854..629561622927708.6350327-CDS-E-fasciculatus_F_contig12:62854..62956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 62855..62956 +
1695995660.098851-CDS-E-fasciculatus_F_contig12:62854..629561695995660.098851-CDS-E-fasciculatus_F_contig12:62854..62956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 62855..62956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12.1556.1prot_E-fasciculatus_F_contig12.1556.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12 61482..62956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12.1556.1

>prot_E-fasciculatus_F_contig12.1556.1 ID=prot_E-fasciculatus_F_contig12.1556.1|Name=mRNA_E-fasciculatus_F_contig12.1556.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=343bp
VQALLGNLDDTSSTADVLECLAACPQLCSEERRVLAGEMEAITGPLRDWL
LEREGGAPPLRGPRSSSQTPPAAPAAAAQPASAAAAKPASRKGKGKGKGK
GGGSGKSKAGESPALPGGEPAPAAAAAAAAAAAAAAAGTKDEVDGEFFTQ
GRRGEGNRRSARESPELSRVVAHNLVVMLSALHRAPPPDASVDGGLAAPG
GGENGDEGSSAGGGSAAGGVDKGSRLLAAVSAGGRLAREQDLVFGLAEPL
LDACMQVAARRASPQLLGTVVETKAMLRRRLWSSEDPAALERQREEADSD
LDAAVPSIKVKSVAVETWGESQVAVGDTVTATITIAREHAPEY
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mRNA from alignment at E-fasciculatus_F_contig12:61482..62956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12.1556.1 ID=mRNA_E-fasciculatus_F_contig12.1556.1|Name=mRNA_E-fasciculatus_F_contig12.1556.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1475bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:61482..62956+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCAGGCCTTGCTGGGCAACCTGGACGACACGAGCTCGACGGCCGACGT
GCTGGAGTGCCTCGCAGCCTGCCCGCAGCTGTGCTCCGAGGAGCGCAGGG
TCCTGGCGGGAGAGATGGAAGCCATCACCGGCCCCCTGCGAGACTGGCTC
CTGGAGCGGGAAGGGGGGGCACCACCGTTGCGCGGCCCCCGCTCCTCGTC
GCAGACCCCTCCGGCGGCGCCGGCGGCGGCTGCGCAGCCGGCCTCGGCGG
CAGCGGCAAAGCCGGCCTCACGGAAGGGGAAAGGGAAGGGGAAAGGGAAG
GGTGGTGGTTCCGGCAAGAGCAAGGCCGGCGAGAGCCCGGCTTTGCCCGG
AGGGGAACCGGCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCGGCTG
CGGCGGCGGCGGGGACGAAGGACGAGGTGGACGGGGAGTTCTTCACGCAG
GGGAGGAGAGGGGAAGGGAACCGCCGGAGCGCTCGGGAGAGCCCGGAGCT
CTCCAGGGTCGTGGCGCACAACCTCGTGGTGATGCTGAGCGCTCTCCACC
GGGCCCCGCCGCCCGACGCCTCCGTAGACGGGGGGCTAGCAGCGCCAGGA
GGCGGCGAAAATGGAGATGAGGGGAGCAGCGCCGGGGGGGGTTCGGCCGC
AGGAGGGGTTGACAAGGGCTCGAGGCTCCTGGCCGCCGTCTCCGCGGGCG
GAAGGCTTGCCCGGGAGCAAGACCTGGTGTTCGGCCTCGCGGAGCCGCTC
CTCGACGCCTGCATGCAGGTTGCGGCGAGGCGGGCGTCGCCCCAGCTGCT
GGGCACCGTGGTGGAGACGAAGGCCATGCTGAGGCGCAGGCTGTGGTCGT
CGGAGGACCCCGCGGCCCTCGAGCGGCAGCGCGAGGAGGCGGACTCGGAC
TTGGACGCCGCTGTGCCCAGCATCAAGGTTTGTGACGACAATCGTTGCTG
AAGTTTTTTCTTTTTTGCCCTTGCAGCCGTACGACGTCCGGTGTTGGTTT
TCAATGCGTGGGCGGCGTCGTGAGGCTCGTGAGGCTCTTCTTTGCTGACG
AGAGAGGAGTGTTTTTTAGTTTTTTCCCGGTCGTTACCGTTTGTTCTCCC
GCACGCGTGTGTTGGGTTTATCGCTCCTGGAGTGTTTTTCGCGGGTCGGT
TTCGGAACAGTTAACTGGATGACATTTTTTCGGTTCACACAGAGAATTTA
GAGAATGCTAGTTTTGTGTCCATGGTGCACCGTCGAATGCAGCGGACATC
GTTCAGTCTCAACAGCGACCCTGATGGTCGCACACAAGCTTCTCTATGGG
AGCCAGCGAGCCTTCAGGGCATCCTATTTGCTCGCACATACTAACCGCCG
CCACCGCCCTCTCGTCCCATCAGGTTAAGAGCGTGGCGGTGGAGACGTGG
GGAGAGAGCCAGGTAGCCGTGGGAGACACGGTCACCGCTACTATCACCAT
CGCCCGAGAGCACGCGCCGGAGTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12:61482..62956+

>mRNA_E-fasciculatus_F_contig12.1556.1 ID=mRNA_E-fasciculatus_F_contig12.1556.1|Name=mRNA_E-fasciculatus_F_contig12.1556.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2058bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:61482..62956+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCAGGCCTTGCTGGGCAACCTGGACGACACGAGCTCGACGGCCGACGT
GCTGGAGTGCCTCGCAGCCTGCCCGCAGCTGTGCTCCGAGGAGCGCAGGG
TCCTGGCGGGAGAGATGGAAGCCATCACCGGCCCCCTGCGAGACTGGCTC
CTGGAGCGGGAAGGGGGGGCACCACCGTTGCGCGGCCCCCGCTCCTCGTC
GCAGACCCCTCCGGCGGCGCCGGCGGCGGCTGCGCAGCCGGCCTCGGCGG
CAGCGGCAAAGCCGGCCTCACGGAAGGGGAAAGGGAAGGGGAAAGGGAAG
GGTGGTGGTTCCGGCAAGAGCAAGGCCGGCGAGAGCCCGGCTTTGCCCGG
AGGGGAACCGGCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCGGCTG
CGGCGGCGGCGGGGACGAAGGACGAGGTGGACGGGGAGTTCTTCACGCAG
GGGAGGAGAGGGGAAGGGAACCGCCGGAGCGCTCGGGAGAGCCCGGAGCT
CTCCAGGGTCGTGGCGCACAACCTCGTGGTGATGCTGAGCGCTCTCCACC
GGGCCCCGCCGCCCGACGCCTCCGTAGACGGGGGGCTAGCAGCGCCAGGA
GGCGGCGAAAATGGAGATGAGGGGAGCAGCGCCGGGGGGGGTTCGGCCGC
AGGAGGGGTTGACAAGGGCTCGAGGCTCCTGGCCGCCGTCTCCGCGGGCG
GAAGGCTTGCCCGGGAGCAAGACCTGGTGTTCGGCCTCGCGGAGCCGCTC
CTCGACGCCTGCATGCAGGTTGCGGCGAGGCGGGCGTCGCCCCAGCTGCT
GGGCACCGTGGTGGAGACGAAGGCCATGCTGAGGCGCAGGCTGTGGTCGT
CGGAGGACCCCGCGGCCCTCGAGCGGCAGCGCGAGGAGGCGGACTCGGAC
TTGGACGCCGCTGTGCCCAGCATCAAGGTCCAGGCCTTGCTGGGCAACCT
GGACGACACGAGCTCGACGGCCGACGTGCTGGAGTGCCTCGCAGCCTGCC
CGCAGCTGTGCTCCGAGGAGCGCAGGGTCCTGGCGGGAGAGATGGAAGCC
ATCACCGGCCCCCTGCGAGACTGGCTCCTGGAGCGGGAAGGGGGGGCACC
ACCGTTGCGCGGCCCCCGCTCCTCGTCGCAGACCCCTCCGGCGGCGCCGG
CGGCGGCTGCGCAGCCGGCCTCGGCGGCAGCGGCAAAGCCGGCCTCACGG
AAGGGGAAAGGGAAGGGGAAAGGGAAGGGTGGTGGTTCCGGCAAGAGCAA
GGCCGGCGAGAGCCCGGCTTTGCCCGGAGGGGAACCGGCTCCCGCCGCCG
CCGCCGCCGCCGCCGCCGCTGCGGCTGCGGCGGCGGCGGGGACGAAGGAC
GAGGTGGACGGGGAGTTCTTCACGCAGGGGAGGAGAGGGGAAGGGAACCG
CCGGAGCGCTCGGGAGAGCCCGGAGCTCTCCAGGGTCGTGGCGCACAACC
TCGTGGTGATGCTGAGCGCTCTCCACCGGGCCCCGCCGCCCGACGCCTCC
GTAGACGGGGGGCTAGCAGCGCCAGGAGGCGGCGAAAATGGAGATGAGGG
GAGCAGCGCCGGGGGGGGTTCGGCCGCAGGAGGGGTTGACAAGGGCTCGA
GGCTCCTGGCCGCCGTCTCCGCGGGCGGAAGGCTTGCCCGGGAGCAAGAC
CTGGTGTTCGGCCTCGCGGAGCCGCTCCTCGACGCCTGCATGCAGGTTGC
GGCGAGGCGGGCGTCGCCCCAGCTGCTGGGCACCGTGGTGGAGACGAAGG
CCATGCTGAGGCGCAGGCTGTGGTCGTCGGAGGACCCCGCGGCCCTCGAG
CGGCAGCGCGAGGAGGCGGACTCGGACTTGGACGCCGCTGTGCCCAGCAT
CAAGGTTAAGAGCGTGGCGGTGGAGACGTGGGGAGAGAGCCAGGTAGCCG
TGGGAGACACGGTCACCGCTACTATCACCATCGCCCGAGAGCACGCGCCG
GAGTACGTTAAGAGCGTGGCGGTGGAGACGTGGGGAGAGAGCCAGGTAGC
CGTGGGAGACACGGTCACCGCTACTATCACCATCGCCCGAGAGCACGCGC
CGGAGTAC
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