mRNA_E-fasciculatus_F_contig12.1554.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12.1554.1
Unique NamemRNA_E-fasciculatus_F_contig12.1554.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12.1554.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 2.240e-75
Identity = 125/145 (86.21%), Postives = 133/145 (91.72%), Query Frame = 1 
Query:    1 GVRLHVAQTLDVIKTTMLNDKQKHDVIDAVNVDFNIPLVSEATERNAIEKFVDQAVPAMEPSLMALMPAAYVDLIKIALDETLAAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEMVKSAVKTD 435
            GVRLH +Q LDVIK  MLNDKQKHDVIDAVNVD +IPLVSE  ER AIEKFVDQAVPAMEPSL ALMP AYVDL+K+ LDETLAAAERKERM+ELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNE+V +AVK+D
Sbjct:   22 GVRLHASQALDVIKNAMLNDKQKHDVIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIVAAAVKSD 166
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BLAST of mRNA_E-fasciculatus_F_contig12.1554.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.530e-69
Identity = 119/145 (82.07%), Postives = 129/145 (88.97%), Query Frame = 1 
Query:    1 GVRLHVAQTLDVIKTTMLNDKQKHDVIDAVNVDFNIPLVSEATERNAIEKFVDQAVPAMEPSLMALMPAAYVDLIKIALDETLAAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEMVKSAVKTD 435
            G R H +QTLDVIKT MLNDKQKHDVIDAVNVDF+IPL+SE  ER  IE FVDQAVPAMEPSL ALMP AYVDL+K+ALDETL AAERKE MS LLRGELAVPLS+QLNERVD SYIPESMEGKVLK+VAEKMVNE+V +AVK+D
Sbjct:   40 GGRSHASQTLDVIKTIMLNDKQKHDVIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIVAAAVKSD 184
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BLAST of mRNA_E-fasciculatus_F_contig12.1554.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 1.010e-66
Identity = 111/129 (86.05%), Postives = 121/129 (93.80%), Query Frame = 1 
Query:   49 MLNDKQKHDVIDAVNVDFNIPLVSEATERNAIEKFVDQAVPAMEPSLMALMPAAYVDLIKIALDETLAAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEMVKSAVKTD 435
            MLNDKQKHDVIDAVNVDF+IPL+SE  ER  IEKFVDQAVPAMEPSL ALMP AY+DL+K+ALDETL AAERKERMSELLRGELAVPLS+QLNERVDCSYIPESMEGKVLK+VAEKMVNE+V +AVK+D
Sbjct:    1 MLNDKQKHDVIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIVAAAVKSD 129
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BLAST of mRNA_E-fasciculatus_F_contig12.1554.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 3.600e-34
Identity = 70/126 (55.56%), Postives = 94/126 (74.60%), Query Frame = 1 
Query:   49 MLNDKQKHDVIDAVNVDFNIPLVSEATERNAIEKFVDQAVPAMEPSLMALMPAAYVDLIKIALDETLAAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEMVKSAV 426
            MLN++Q+  ++  VN D +IPL+SE+ ER  IEKFVD+ +P +EPS+ A+MP  YV  IK ALDET     R++ +S LLRGEL+ PL+RQLNERVDCS IPE  EGKVLK+V+ K+++E V+  V
Sbjct:    1 MLNERQRAVMVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFVEWTV 126
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BLAST of mRNA_E-fasciculatus_F_contig12.1554.1 vs. uniprot
Match: A0A7S4G473_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G473_9EUGL)

HSP 1 Score: 90.9 bits (224), Expect = 2.360e-18
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:   49 MLNDKQKHDVIDAVNVDFNIPLVSEATERNAIEKFVDQAVPAMEPSLMALMPAAYVDLIKIALDETLAAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEMVKSAVK 429
            +L+  Q   V+  VN   NIP +SE++E + I + VD    AMEPSL+A+MP  YV++IK+ L+E L+A E+   +S L +  L  PL+  LNERVD   +PESME   L+   E+M++E V+  ++
Sbjct:    9 LLSVSQVDRVVAKVNNSMNIPFMSESSEASLIRQAVDTLNGAMEPSLLAIMPPDYVEIIKLCLNEKLSANEKLPLISALFKKNLRDPLAAALNERVDIPVLPESMEEWFLEKAVEEMIDEGVEHTLQ 135
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12.1554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7I3_ECTSI2.240e-7586.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD72_9PHAE1.530e-6982.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSA3_9PHAE1.010e-6686.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I4_ECTSI3.600e-3455.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4G473_9EUGL2.360e-1841.73Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12contigE-fasciculatus_F_contig12:49899..52296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_000390.1
Exons4
Model size1170
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12.1554.1prot_E-fasciculatus_F_contig12.1554.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12 50631..52248 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927708.1367178-UTR-E-fasciculatus_F_contig12:49898..506301622927708.1367178-UTR-E-fasciculatus_F_contig12:49898..50630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12 49899..50630 -
1695995659.9634144-UTR-E-fasciculatus_F_contig12:49898..506301695995659.9634144-UTR-E-fasciculatus_F_contig12:49898..50630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12 49899..50630 -
1622927708.2017577-UTR-E-fasciculatus_F_contig12:52248..522961622927708.2017577-UTR-E-fasciculatus_F_contig12:52248..52296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12 52249..52296 -
1695995660.0157638-UTR-E-fasciculatus_F_contig12:52248..522961695995660.0157638-UTR-E-fasciculatus_F_contig12:52248..52296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12 52249..52296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927708.148341-CDS-E-fasciculatus_F_contig12:50630..508051622927708.148341-CDS-E-fasciculatus_F_contig12:50630..50805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 50631..50805 -
1695995659.9764197-CDS-E-fasciculatus_F_contig12:50630..508051695995659.9764197-CDS-E-fasciculatus_F_contig12:50630..50805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 50631..50805 -
1622927708.15886-CDS-E-fasciculatus_F_contig12:51116..512171622927708.15886-CDS-E-fasciculatus_F_contig12:51116..51217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 51117..51217 -
1695995659.9859772-CDS-E-fasciculatus_F_contig12:51116..512171695995659.9859772-CDS-E-fasciculatus_F_contig12:51116..51217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 51117..51217 -
1622927708.1734054-CDS-E-fasciculatus_F_contig12:51537..516271622927708.1734054-CDS-E-fasciculatus_F_contig12:51537..51627Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 51538..51627 -
1695995659.9961698-CDS-E-fasciculatus_F_contig12:51537..516271695995659.9961698-CDS-E-fasciculatus_F_contig12:51537..51627Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 51538..51627 -
1622927708.1877792-CDS-E-fasciculatus_F_contig12:52224..522481622927708.1877792-CDS-E-fasciculatus_F_contig12:52224..52248Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 52225..52248 -
1695995660.0059912-CDS-E-fasciculatus_F_contig12:52224..522481695995660.0059912-CDS-E-fasciculatus_F_contig12:52224..52248Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 52225..52248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12.1554.1

>prot_E-fasciculatus_F_contig12.1554.1 ID=prot_E-fasciculatus_F_contig12.1554.1|Name=mRNA_E-fasciculatus_F_contig12.1554.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp
MLNDKQKHDVIDAVNVDFNIPLVSEATERNAIEKFVDQAVPAMEPSLMAL
MPAAYVDLIKIALDETLAAAERKERMSELLRGELAVPLSRQLNERVDCSY
IPESMEGKVLKIVAEKMVNEMVKSAVKTD*
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mRNA from alignment at E-fasciculatus_F_contig12:49899..52296-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12.1554.1 ID=mRNA_E-fasciculatus_F_contig12.1554.1|Name=mRNA_E-fasciculatus_F_contig12.1554.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:49899..52296- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGTCCGCTTACACGTTGCGCAGACGCTGGACGTGATCAAGACCACCAT
GCTCAACGACAAGCAAAAACATGTGGGTTGAACTTACGGCTTCCTTGAGC
CGACGGACGGTGGGTCAGGTATTGGCAGGTGTCCTTTGAGCCGGAGTAAA
CGTAGTACAACTCGGATGTAGCAGAAACCAAAACAAATTGTTTGTGCATG
AGCACAGGACGGAACCGACACAGGGGGGCGGGATCACCAGGTTGGCCAGC
TCAGGAGATGAAGCAACTTGATACTTGGGACTCCAGGCACGTCAATACTT
TTGCGAGCGATGGAGCGATCTCGTAGTGATGTCTTTTTTTCTAGTTGTTC
GGGTAGTGGACGTGACCACCCACGTTGTTCGTATGGTTGAGCAATCGGGA
ATAGGGGTTACAGGTTAAGAGGTATAGGCAACGTGAAACGACTAACATTC
CAGTAAAACCAACGATATTGCAATATGTGGTCAATTCTTGTCTAAGGGTC
TGGAAATCGAACTTCCTGTGAGCCATCCTCCATTTTCCCTCATACCCCCC
CAATTTGAGTCGTGTACAGCAGGGTAGGCCACCCCAAACCTGTCTAACGG
AGATCCCGATGCACCTGCAACAGAACAGGATCACATCAGTCGTTTGTCCA
AAACGGCATTTTGTTCCAGGATGTAATCGACGCGGTCAACGTGGACTTCA
ACATCCCTTTGGTCTCGGAGGCGACGGAAAGGAATGCTATCGAGAAGTTC
GTCGACCAGGTACCCAAAGAAGTAGCGGTATGACGCGTAGAACACCGCAT
AGACAAAACCGCATGCTTTCCCAAGACATCGAGGCGCATTGAAACGACAA
CAAGCCGGAGCACCAAACGCAAAAATCGTTTTTAAGGCGGGATCTGGCGA
AAAAAAGTCTACCTACAATGCCATTTATTAATGCCACCGACGTGTTGTAA
GGAGCCCGAGGTTCAAGCAGAACATGAGGCATGCAACTCTCCCTTCACGT
TGGTGGGAAATGACCTGCTTGCCATCCACTGCGTTCAACTTGTCGTGCGA
CCAACATCTTGTAAACTGTCATTTTGTAGGCGGTGCCCGCAATGGAACCA
TCACTCATGGCGCTCATGCCAGCCGCGTATGTGGATCTGATCAAGATCGC
GCTGGACGAAACCCTAGCGGCCGCCGAAAGGTGAGCTAGCTAGCTCAAGA
ACATGTCCTGTTTCATGACCACAAAAGTCTACCACCAAGCGTGGTGACGC
GTGCAAGCTCTCTAGGTGGGTTGCTCGCGGTCGGGGCTGAAAACTGTTCG
GAAACCGCGGCGCGGTGATACGATGTCAGGGGGGACGTTTCCGACCACCT
CCGCGGATGTACTCCAACGCCGTGCAACATAGTCGCTTACTCCCAATTGT
TTGGAGGGGCCAACCAGTGACACCGCACGATCGCCCGTCTTCTAAACGCA
CATGGGCTCGTGCACACTTTATTGATGTGTAATCCGGCCAGGAAGGAGCG
CATGTCCGAGCTGCTACGTGGCGAGCTTGCCGTTCCGCTGTCGAGGCAAC
TCAACGAGCGCGTGGACTGTTCGTACATCCCGGAGAGCATGGAGGGGAAG
GTTCTCAAGATCGTGGCCGAAAAGATGGTCAACGAAATGGTCAAGTCGGC
CGTGAAAACGGACTAGGGAGGCCAGATAGAGCTGAGTGACCATTCCGGCA
AGCTCGGCTTCGTCATTCGCGCTTGAGCGAGGGAGCATTCATGTTGTCCT
TGTGTAGAGTTTCGCCTTTCATATCGACGAGACACAAAAGGGTGTTAGCC
ACGTGCGGGCCTACTCTCAAGTATGTAGGAGGAAGGGGACCTGGACGTCT
TTCCCCGTACAGTAGGCCTTATACAGGAACCCCTCTATGAGGAGGCGGTA
GTCGTATTGTTGTTTGGTCTCGCGAGTAGGCCGGACTGGTTAACCACATG
TGTTTGTGACAACGGAGTTTTGGTCGATTTGCTTTAGTCTCTATCGGCTG
CCGATTCCATCTTCAAGTAAGATGAGCCGGGGGTACGGGCTGACGAGGCA
TGCACACTCTGATTGCGGCTATCGTGGTACCTCCCATGGGATGTTCAGTG
ACTTTACTGTGGGCTGCCCCTGAATCGCCATAGGGCTAGGCCCCCCTAGG
GGCCGACAAATCCGTCCATAGCCACCTTAAAAAGGGACTGATCGCGACCC
CCGGCCCTTCTTGGGCGGCCCGTCGGACCATATGTATGGGGGATTCGTGA
CGTAGTTTTGTCTTTTTGCACTCACGGAACATCCTCGTCGCCCGTAGTTT
GGCGCCGGTGTAAGTCAAAAATTAACTCTTATTCCGATGATCACTCACTG
TCTCCGCTTTCCCAGACGCGCTCTCACTATCTACAATGGACGCCCAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12:49899..52296-

>mRNA_E-fasciculatus_F_contig12.1554.1 ID=mRNA_E-fasciculatus_F_contig12.1554.1|Name=mRNA_E-fasciculatus_F_contig12.1554.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:49899..52296- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCAACGACAAGCAAAAACATATGCTCAACGACAAGCAAAAACATGA
TGTAATCGACGCGGTCAACGTGGACTTCAACATCCCTTTGGTCTCGGAGG
CGACGGAAAGGAATGCTATCGAGAAGTTCGTCGACCAGGATGTAATCGAC
GCGGTCAACGTGGACTTCAACATCCCTTTGGTCTCGGAGGCGACGGAAAG
GAATGCTATCGAGAAGTTCGTCGACCAGGCGGTGCCCGCAATGGAACCAT
CACTCATGGCGCTCATGCCAGCCGCGTATGTGGATCTGATCAAGATCGCG
CTGGACGAAACCCTAGCGGCCGCCGAAAGGCGGTGCCCGCAATGGAACCA
TCACTCATGGCGCTCATGCCAGCCGCGTATGTGGATCTGATCAAGATCGC
GCTGGACGAAACCCTAGCGGCCGCCGAAAGGAAGGAGCGCATGTCCGAGC
TGCTACGTGGCGAGCTTGCCGTTCCGCTGTCGAGGCAACTCAACGAGCGC
GTGGACTGTTCGTACATCCCGGAGAGCATGGAGGGGAAGGTTCTCAAGAT
CGTGGCCGAAAAGATGGTCAACGAAATGGTCAAGTCGGCCGTGAAAACGG
ACTAGGAAGGAGCGCATGTCCGAGCTGCTACGTGGCGAGCTTGCCGTTCC
GCTGTCGAGGCAACTCAACGAGCGCGTGGACTGTTCGTACATCCCGGAGA
GCATGGAGGGGAAGGTTCTCAAGATCGTGGCCGAAAAGATGGTCAACGAA
ATGGTCAAGTCGGCCGTGAAAACGGACTAG
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