mRNA_E-fasciculatus_F_contig12.1551.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12.1551.1
Unique NamemRNA_E-fasciculatus_F_contig12.1551.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A6H5L4K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4K4_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 2.340e-50
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 1
Query:    1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSRG 288
            GGFAESFRF+STYP++ +HVV LS+TSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLV+SAV+FGHLLG GCW GA VVFGTIGYRIRRKMQSRG
Sbjct:  297 GGFAESFRFMSTYPAAFFHVVILSVTSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVLSAVMFGHLLGLGCWVGAFVVFGTIGYRIRRKMQSRG 392          
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A6S9KLE1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KLE1_HETAK)

HSP 1 Score: 117 bits (293), Expect = 2.700e-29
Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKM---QSRG 288
            G F ++  F++  P ++ HV+ LSITS TGQLFIFYTIKKFGP+IFTIIMTTRQM+S+V+S  +FGH LG    AGA+VVF T+GYRIRR+    QS+G
Sbjct:  308 GEFFQTLTFMADNPEAVSHVLVLSITSCTGQLFIFYTIKKFGPVIFTIIMTTRQMLSMVLSCFLFGHALGLLAVAGAIVVFATLGYRIRRQYLAKQSKG 406          
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: F0YSJ6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSJ6_AURAN)

HSP 1 Score: 111 bits (277), Expect = 2.930e-28
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQS 282
            G   ES  FL+T  ++L +V+TLS TSATGQLFIFYTIKKFGPI+FTI+MTTRQM+SL VS +VFGH LG G   G  VVFG + YR +RK  +
Sbjct:  141 GEMGESLAFLATNEAALVNVLTLSFTSATGQLFIFYTIKKFGPIVFTIMMTTRQMLSLTVSCLVFGHSLGPGAVLGTGVVFGVLFYRTKRKYDA 234          
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A836CQP3_9STRA (Solute carrier family 35, member B1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQP3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.180e-28
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
            G    S  F+  +P +L H+ TLSITSATGQLFIFYTIK FGPIIFTIIMT RQM SLV+S + FGH+LG     G  VVFGT+GYRI+RK   R
Sbjct:  275 GELFSSIAFVMDHPVALKHLATLSITSATGQLFIFYTIKNFGPIIFTIIMTCRQMFSLVISTLWFGHVLGLLSLLGTTVVFGTLGYRIKRKYDGR 369          
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A8J2SJ07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ07_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.060e-28
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQS 282
            G    S  FL+  P++L +V+TLS+TSATGQLFIFYTIKKFGPI+FTI+MTTRQM+SL VS VVFGH LG G   G  VVFG + YR +RK  +
Sbjct:  246 GEMGLSLAFLAANPAALANVLTLSLTSATGQLFIFYTIKKFGPIVFTIMMTTRQMLSLTVSCVVFGHKLGGGAVLGTCVVFGVLFYRTKRKYDA 339          
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A7S2MHE4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHE4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.040e-27
Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   22 RFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
            +FL   P+SL + +  ++TSA+GQ+FIFYTIK FGP++FTIIMTTRQM+S+V+S ++FGH L    +AGALVVFG + YRIRRK   +
Sbjct:   69 QFLIQNPNSLVYNIITAVTSASGQMFIFYTIKSFGPVVFTIIMTTRQMISMVISTILFGHQLAAASFAGALVVFGAVFYRIRRKTLEK 156          
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A7S2V172_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V172_9STRA)

HSP 1 Score: 110 bits (275), Expect = 8.330e-27
Identity = 54/91 (59.34%), Postives = 72/91 (79.12%), Query Frame = 1
Query:   13 ESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
            +S RFL   P +L +++TLS+ SATGQLFI+YTIKKFGPI+FTIIMTTRQM+S+V+S +V+ H +      GAL+VF TIGYRIRR+  ++
Sbjct:  289 KSLRFLGRNPEALVNILTLSVCSATGQLFIYYTIKKFGPIVFTIIMTTRQMLSMVISCIVYDHPMSLPSVFGALIVFTTIGYRIRRQYNAK 379          
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A7S2WFB0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFB0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 8.680e-27
Identity = 51/88 (57.95%), Postives = 70/88 (79.55%), Query Frame = 1
Query:   22 RFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
             FLS +P +L++ +  +ITSATGQLFIFYTIK+FGP++FTIIMTTRQM+S+++S ++FGH L  G + GA +VFG + YRIRRK   +
Sbjct:  271 EFLSYHPQALWYNIITAITSATGQLFIFYTIKQFGPVVFTIIMTTRQMISMIISTLLFGHSLSSGSYVGAFLVFGAVFYRIRRKQLDK 358          
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A7S2MHM3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHM3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.660e-25
Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   22 RFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSR 285
            +FL   P+SL + +  ++TSA+GQ+FIFYTIK FGP++FTIIMTTRQM+S+V+S ++FGH L    +AGALVVFG + YRIRRK   +
Sbjct:  266 QFLIQNPNSLVYNIITAVTSASGQMFIFYTIKSFGPVVFTIIMTTRQMISMVISTILFGHQLAAASFAGALVVFGAVFYRIRRKTLEK 353          
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Match: A0A812Z441_SYMMI (Slc35b2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z441_SYMMI)

HSP 1 Score: 100 bits (249), Expect = 1.980e-25
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   22 RFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIMTTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSRG 288
             FL   P++L + +  +ITSATGQ FIFYTIK+FGPI+FT+IMTTRQM+S+V+S+V FGH +    + GA +VFG + Y +RR+M   G
Sbjct:   27 EFLLVNPTALLYNIVTAITSATGQFFIFYTIKEFGPIVFTVIMTTRQMLSMVLSSVFFGHKMSIYSYLGATLVFGAVFYSVRRQMNKHG 115          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12.1551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4K4_9PHAE2.340e-5087.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S9KLE1_HETAK2.700e-2961.62Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
F0YSJ6_AURAN2.930e-2862.77Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A836CQP3_9STRA3.180e-2863.16Solute carrier family 35, member B1 n=1 Tax=Tribon... [more]
A0A8J2SJ07_9STRA8.060e-2862.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2MHE4_9STRA3.040e-2757.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2V172_9STRA8.330e-2759.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WFB0_9STRA8.680e-2757.95Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2MHM3_9STRA1.660e-2557.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812Z441_SYMMI1.980e-2553.93Slc35b2 protein n=1 Tax=Symbiodinium microadriatic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12contigE-fasciculatus_F_contig12:211..1302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D7G7H9
KEGG koko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
EggNOG free text desc.UDP-galactose transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG1581@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927707.5629067-CDS-E-fasciculatus_F_contig12:210..4011622927707.5629067-CDS-E-fasciculatus_F_contig12:210..401Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 211..401 +
1695995659.5760517-CDS-E-fasciculatus_F_contig12:210..4011695995659.5760517-CDS-E-fasciculatus_F_contig12:210..401Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 211..401 +
1622927707.5740309-CDS-E-fasciculatus_F_contig12:1202..13021622927707.5740309-CDS-E-fasciculatus_F_contig12:1202..1302Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 1203..1302 +
1695995659.5919998-CDS-E-fasciculatus_F_contig12:1202..13021695995659.5919998-CDS-E-fasciculatus_F_contig12:1202..1302Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 1203..1302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12.1551.1prot_E-fasciculatus_F_contig12.1551.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12 211..1302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12.1551.1

>prot_E-fasciculatus_F_contig12.1551.1 ID=prot_E-fasciculatus_F_contig12.1551.1|Name=mRNA_E-fasciculatus_F_contig12.1551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp
GGFAESFRFLSTYPSSLYHVVTLSITSATGQLFIFYTIKKFGPIIFTIIM
TTRQMVSLVVSAVVFGHLLGFGCWAGALVVFGTIGYRIRRKMQSRG*
back to top

mRNA from alignment at E-fasciculatus_F_contig12:211..1302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12.1551.1 ID=mRNA_E-fasciculatus_F_contig12.1551.1|Name=mRNA_E-fasciculatus_F_contig12.1551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:211..1302+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGGTTTGCCGAGAGCTTCCGGTTCCTGTCCACGTACCCATCGTCCCT CTACCACGTGGTCACCCTGTCGATCACCTCCGCCACCGGGCAGCTGTTCA TCTTCTACACCATCAAGAAGTTCGGACCCATCATCTTCACCATTATCATG ACCACCAGACAAATGGTCTCCCTGGTCGTTTCGGCCGTCGTGTGAGTTAA TTGACGACAAAAGGCTCCATCACAATCATATGCATACCCCCGGGCATGGT TGATTGCCTGGTTTTGGACTCATCCCCGCTTTTGATTGATTGGCGGATTT TGGTCTCATTCGTTCATCCCCACGCATGGTGGATTGCCTGGTTTTCGTCT CATTTGCTTGTCGCCGGTATGGTTTATAACCTGGTGCCTGTTTTTCTCGT TTTGTTTGTAGTAGCTGGGTGTTGATCCGACTGCTGTTGCAAGAGCATAC TTTGCAATAGTTGATTGTGGCAAGCTTGGTACGGACCCCGCGGTATACCC CCCAGAGACCCCTCACTCAGCAAGTGCGCAAAAGCAAAAGCAAAAGCTGG AGAAGAATGAATGTCTTGCAAATGTGCTGTTTTTGATGGCATGCTAAATT TGAATTCGCGCAAAGTTCGTCGATCGTCTACGAAAAATTGTCTGGACATT TGGGTGCTGAGAGAAGAGAAGGTCGAACGGTGTAGTCAACGCGCATGCAA GCATTGATTGTGATGGAACGTTGCAACGATGCGCGGGTGCTCGTAGCCCC CTTTCTGCCTCCCCTGCAATATTCATATTCATAACGTATCCAGGTGCTGT GATCTGCGGTATTATTCCTGTCGGCGCTGTTTTCCACAGTCAAGAACCCA CGCGTACGTTTCTAAGACAGCCCTGCCTGCGCACGTGCCCGCTTTTCCAT TCCATCGTCTTCGCCCCCGTCCTACCTCCCTCCCTCCCTCCTTACCTCCC TCCCTCCTCATTTCCCTCCGTACTCCGTTATTCGGCGAGAAGGTTTGGGC ACTTGCTCGGGTTTGGGTGCTGGGCCGGAGCATTGGTCGTCTTCGGCACC ATCGGGTACCGCATTCGTAGGAAAATGCAGTCCAGGGGGTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12:211..1302+

>mRNA_E-fasciculatus_F_contig12.1551.1 ID=mRNA_E-fasciculatus_F_contig12.1551.1|Name=mRNA_E-fasciculatus_F_contig12.1551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:211..1302+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGGTTTGCCGAGAGCTTCCGGTTCCTGTCCACGTACCCATCGTCCCT
CTACCACGTGGTCACCCTGTCGATCACCTCCGCCACCGGGCAGCTGTTCA
TCTTCTACACCATCAAGAAGTTCGGACCCATCATCTTCACCATTATCATG
ACCACCAGACAAATGGTCTCCCTGGTCGTTTCGGCCGTCGTGGCGGGTTT
GCCGAGAGCTTCCGGTTCCTGTCCACGTACCCATCGTCCCTCTACCACGT
GGTCACCCTGTCGATCACCTCCGCCACCGGGCAGCTGTTCATCTTCTACA
CCATCAAGAAGTTCGGACCCATCATCTTCACCATTATCATGACCACCAGA
CAAATGGTCTCCCTGGTCGTTTCGGCCGTCGTGTTTGGGCACTTGCTCGG
GTTTGGGTGCTGGGCCGGAGCATTGGTCGTCTTCGGCACCATCGGGTACC
GCATTCGTAGGAAAATGCAGTCCAGGGGGTAAGTTTGGGCACTTGCTCGG
GTTTGGGTGCTGGGCCGGAGCATTGGTCGTCTTCGGCACCATCGGGTACC
GCATTCGTAGGAAAATGCAGTCCAGGGGGTAA
back to top