mRNA_E-fasciculatus_F_contig11993.1548.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11993.1548.1
Unique NamemRNA_E-fasciculatus_F_contig11993.1548.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11993.1548.1 vs. uniprot
Match: A0A6H5K7D6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D6_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.960e-25
Identity = 69/107 (64.49%), Postives = 72/107 (67.29%), Query Frame = -2 
Query:   78 AWNNLGFVGGSGDLVGDNGXXXXXXXXXREFRAGMPLPTGDHNGAGGMWKGMF----------VADARSSAVDAVGVMAMSNGGGDDVPPLFAGAAGARKTLEAPAL 368
            AW+NLG   GSGDLVGDNG         REFR GMPLP G  NGAGG WKGMF           ADARSSAVDA GVM MSNGGGD V PLFA AA  RKTLE+PA+
Sbjct:    7 AWSNLGL--GSGDLVGDNGGG-------REFRVGMPLPAGGRNGAGG-WKGMFGDVTRQAGETAADARSSAVDAAGVMTMSNGGGD-VQPLFARAADNRKTLESPAM 102
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11993.1548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7D6_9PHAE1.960e-2564.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11993contigE-fasciculatus_F_contig11993:1816..2466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_002340.1
Exons1
Model size651
Cds size651
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927707.350093-CDS-E-fasciculatus_F_contig11993:1815..24661622927707.350093-CDS-E-fasciculatus_F_contig11993:1815..2466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11993 1816..2466 +
1695995659.4774218-CDS-E-fasciculatus_F_contig11993:1815..24661695995659.4774218-CDS-E-fasciculatus_F_contig11993:1815..2466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11993 1816..2466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11993.1548.1prot_E-fasciculatus_F_contig11993.1548.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11993 1816..2466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11993.1548.1

>prot_E-fasciculatus_F_contig11993.1548.1 ID=prot_E-fasciculatus_F_contig11993.1548.1|Name=mRNA_E-fasciculatus_F_contig11993.1548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=217bp
MNAATAAAAAASSSQSPPPPPPPAGGSAGASKVFLAPAAPAKSGGTSSPP
PLLMAMTPTASTAEERASATNMPFHMPPAPLWSPVGSGIPARNSRPPPPP
PPPPPLSPTRSPEPPTNPRLFHAAAAAAAAATSISESLSDLPGRPLLPLL
PLGSWGLWYICCWCSQAWLGAFSSQAKPPPSAPSRPSKSPPPPPPPLLLP
LLRLPTGSYIGGRGEG*
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mRNA from alignment at E-fasciculatus_F_contig11993:1816..2466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11993.1548.1 ID=mRNA_E-fasciculatus_F_contig11993.1548.1|Name=mRNA_E-fasciculatus_F_contig11993.1548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=651bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11993:1816..2466+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATGCCGCCACCGCCGCCGCCGCCGCCGCCTCGTCGTCCCAGTCGCC
ACCGCCACCACCCCCGCCCGCTGGCGGTAGCGCCGGGGCCTCCAAAGTCT
TCCTAGCACCTGCAGCCCCCGCGAAGAGCGGCGGGACGTCGTCACCGCCC
CCGTTGCTCATGGCCATGACCCCCACGGCGTCGACTGCCGAGGAGCGGGC
GTCAGCGACAAACATGCCTTTCCACATGCCGCCGGCGCCGTTGTGGTCAC
CGGTCGGTAGCGGCATCCCTGCCCGAAATTCTCGTCCGCCACCGCCGCCG
CCGCCGCCGCCGCCGTTATCGCCAACAAGGTCGCCCGAACCGCCCACGAA
CCCGAGGTTGTTCCACGCCGCCGCCGCCGCCGCCGCCGCCGCCACCTCCA
TTTCTGAGTCTTTGTCCGATCTACCGGGGCGGCCGTTGCTGCCGCTGTTG
CCGTTGGGCTCGTGGGGCCTCTGGTACATCTGCTGCTGGTGCTCCCAGGC
TTGGCTCGGCGCCTTTAGCTCCCAAGCTAAGCCTCCTCCTTCTGCTCCCT
CCCGGCCATCGAAGTCGCCGCCGCCGCCGCCGCCACCGCTGCTGCTGCCG
CTGCTGCGTCTTCCCACCGGCTCGTACATCGGTGGAAGGGGGGAAGGGTA
G
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11993:1816..2466+

>mRNA_E-fasciculatus_F_contig11993.1548.1 ID=mRNA_E-fasciculatus_F_contig11993.1548.1|Name=mRNA_E-fasciculatus_F_contig11993.1548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1302bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11993:1816..2466+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATGCCGCCACCGCCGCCGCCGCCGCCGCCTCGTCGTCCCAGTCGCC
ACCGCCACCACCCCCGCCCGCTGGCGGTAGCGCCGGGGCCTCCAAAGTCT
TCCTAGCACCTGCAGCCCCCGCGAAGAGCGGCGGGACGTCGTCACCGCCC
CCGTTGCTCATGGCCATGACCCCCACGGCGTCGACTGCCGAGGAGCGGGC
GTCAGCGACAAACATGCCTTTCCACATGCCGCCGGCGCCGTTGTGGTCAC
CGGTCGGTAGCGGCATCCCTGCCCGAAATTCTCGTCCGCCACCGCCGCCG
CCGCCGCCGCCGCCGTTATCGCCAACAAGGTCGCCCGAACCGCCCACGAA
CCCGAGGTTGTTCCACGCCGCCGCCGCCGCCGCCGCCGCCGCCACCTCCA
TTTCTGAGTCTTTGTCCGATCTACCGGGGCGGCCGTTGCTGCCGCTGTTG
CCGTTGGGCTCGTGGGGCCTCTGGTACATCTGCTGCTGGTGCTCCCAGGC
TTGGCTCGGCGCCTTTAGCTCCCAAGCTAAGCCTCCTCCTTCTGCTCCCT
CCCGGCCATCGAAGTCGCCGCCGCCGCCGCCGCCACCGCTGCTGCTGCCG
CTGCTGCGTCTTCCCACCGGCTCGTACATCGGTGGAAGGGGGGAAGGGTA
GATGAATGCCGCCACCGCCGCCGCCGCCGCCGCCTCGTCGTCCCAGTCGC
CACCGCCACCACCCCCGCCCGCTGGCGGTAGCGCCGGGGCCTCCAAAGTC
TTCCTAGCACCTGCAGCCCCCGCGAAGAGCGGCGGGACGTCGTCACCGCC
CCCGTTGCTCATGGCCATGACCCCCACGGCGTCGACTGCCGAGGAGCGGG
CGTCAGCGACAAACATGCCTTTCCACATGCCGCCGGCGCCGTTGTGGTCA
CCGGTCGGTAGCGGCATCCCTGCCCGAAATTCTCGTCCGCCACCGCCGCC
GCCGCCGCCGCCGCCGTTATCGCCAACAAGGTCGCCCGAACCGCCCACGA
ACCCGAGGTTGTTCCACGCCGCCGCCGCCGCCGCCGCCGCCGCCACCTCC
ATTTCTGAGTCTTTGTCCGATCTACCGGGGCGGCCGTTGCTGCCGCTGTT
GCCGTTGGGCTCGTGGGGCCTCTGGTACATCTGCTGCTGGTGCTCCCAGG
CTTGGCTCGGCGCCTTTAGCTCCCAAGCTAAGCCTCCTCCTTCTGCTCCC
TCCCGGCCATCGAAGTCGCCGCCGCCGCCGCCGCCACCGCTGCTGCTGCC
GCTGCTGCGTCTTCCCACCGGCTCGTACATCGGTGGAAGGGGGGAAGGGT
AG
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