mRNA_E-fasciculatus_F_contig11985.1542.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11985.1542.1
Unique NamemRNA_E-fasciculatus_F_contig11985.1542.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11985.1542.1 vs. uniprot
Match: D7FYP3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP3_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 8.370e-20
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 GLRPAVVLGGDLNSPPCGPVRYLMGDLMGPDSELWDNVGTFKW 129
            GLRPAV+LGGDLNSPP GPVRYLMGDL+GPDS+LW+N+GTFKW
Sbjct:  490 GLRPAVILGGDLNSPPDGPVRYLMGDLIGPDSDLWENMGTFKW 532
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BLAST of mRNA_E-fasciculatus_F_contig11985.1542.1 vs. uniprot
Match: A0A6H5JRV9_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.910e-19
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 GLRPAVVLGGDLNSPPCGPVRYLMGDLMGPDSELWDNVGTFKW 129
            GLRPAVVLGGDLNS P GPVRYLMGDL+GPDS+LW+NVGTFKW
Sbjct:  660 GLRPAVVLGGDLNSTPGGPVRYLMGDLIGPDSDLWENVGTFKW 702
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BLAST of mRNA_E-fasciculatus_F_contig11985.1542.1 vs. uniprot
Match: W7T5B9_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5B9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.820e-6
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 GLRPAVVLGGDLNSPPC-GPVRYLMGDLMGPDSELWDNVGTFKW 129
            G+RP +VL GDLNS P    +RYL G+ +GP+ E+W+++  F W
Sbjct:   59 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGW 102
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BLAST of mRNA_E-fasciculatus_F_contig11985.1542.1 vs. uniprot
Match: W7TNA6_9STRA (Endonuclease/exonuclease/phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNA6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.990e-6
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 GLRPAVVLGGDLNSPPC-GPVRYLMGDLMGPDSELWDNVGTFKW 129
            G+RP +VL GDLNS P    +RYL G+ +GP+ E+W+++  F W
Sbjct:  100 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGW 143
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BLAST of mRNA_E-fasciculatus_F_contig11985.1542.1 vs. uniprot
Match: K8YU24_NANGC (2-phosphodiesterase 12-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YU24_NANGC)

HSP 1 Score: 51.2 bits (121), Expect = 3.030e-6
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 GLRPAVVLGGDLNSPPC-GPVRYLMGDLMGPDSELWDNVGTFKW 129
            G+RP +VL GDLNS P    +RYL G+ +GP+ E+W+++  F W
Sbjct:  127 GVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGW 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11985.1542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYP3_ECTSI8.370e-2086.05Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JRV9_9PHAE2.910e-1988.37Endo/exonuclease/phosphatase domain-containing pro... [more]
W7T5B9_9STRA2.820e-647.73Endonuclease/exonuclease/phosphatase n=1 Tax=Nanno... [more]
W7TNA6_9STRA2.990e-647.73Endonuclease/exonuclease/phosphatase n=2 Tax=Monod... [more]
K8YU24_NANGC3.030e-647.732-phosphodiesterase 12-like protein n=1 Tax=Nannoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11985contigE-fasciculatus_F_contig11985:68..199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7FYP3
KEGG koko:K19612
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.8189588-CDS-E-fasciculatus_F_contig11985:67..1991622927706.8189588-CDS-E-fasciculatus_F_contig11985:67..199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11985 68..199 +
1695995659.2333488-CDS-E-fasciculatus_F_contig11985:67..1991695995659.2333488-CDS-E-fasciculatus_F_contig11985:67..199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11985 68..199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11985.1542.1prot_E-fasciculatus_F_contig11985.1542.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11985 68..199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11985.1542.1

>prot_E-fasciculatus_F_contig11985.1542.1 ID=prot_E-fasciculatus_F_contig11985.1542.1|Name=mRNA_E-fasciculatus_F_contig11985.1542.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=44bp
GLRPAVVLGGDLNSPPCGPVRYLMGDLMGPDSELWDNVGTFKW*
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mRNA from alignment at E-fasciculatus_F_contig11985:68..199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11985.1542.1 ID=mRNA_E-fasciculatus_F_contig11985.1542.1|Name=mRNA_E-fasciculatus_F_contig11985.1542.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=132bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11985:68..199+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCTGAGGCCCGCGGTGGTCCTCGGCGGCGACCTTAACAGCCCGCCCTG
CGGCCCGGTCCGGTACCTGATGGGAGATCTCATGGGGCCGGACAGTGAAC
TGTGGGACAACGTGGGCACCTTCAAGTGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11985:68..199+

>mRNA_E-fasciculatus_F_contig11985.1542.1 ID=mRNA_E-fasciculatus_F_contig11985.1542.1|Name=mRNA_E-fasciculatus_F_contig11985.1542.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=264bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11985:68..199+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCTGAGGCCCGCGGTGGTCCTCGGCGGCGACCTTAACAGCCCGCCCTG
CGGCCCGGTCCGGTACCTGATGGGAGATCTCATGGGGCCGGACAGTGAAC
TGTGGGACAACGTGGGCACCTTCAAGTGGTGAGGCCTGAGGCCCGCGGTG
GTCCTCGGCGGCGACCTTAACAGCCCGCCCTGCGGCCCGGTCCGGTACCT
GATGGGAGATCTCATGGGGCCGGACAGTGAACTGTGGGACAACGTGGGCA
CCTTCAAGTGGTGA
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