mRNA_E-fasciculatus_F_contig11980.1540.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11980.1540.1 vs. uniprot
Match: D8LEV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV7_ECTSI) HSP 1 Score: 552 bits (1422), Expect = 2.890e-184 Identity = 319/420 (75.95%), Postives = 340/420 (80.95%), Query Frame = 1
Query: 1 GGXXXXXXXDGRFFDLKTGMFQLSMQAETTYIWLMEPDVLPGSRFLYLLMHVSMVKDMAGVYGSEGGVMPAAQTRHRSD-NASLDRQAMTPFALWDTTTSSARHQQ--HRHLSDADDALPAGEEXXXXXXXXXXXXXXXXXXXXXXMGVGGAAGSSTAVSVLSPADVLFSQWFLHKDLVRLLFREKWTGAVSGSGGNGGPAALALSYSLRRYAGAPSYVLPSDPALPEYSGNMLAGLPPGKLNAQGVSIAAEAAAAKAGFVRRKKMFRXXARDGAAAAPDQSRRRLVRDGAVAXXXXXXXXXXLRSLASSSNRNLSSLQATSGGGGGRGDAFSARGDTDGSPSSLLARRLDEPQLRAQFRDLSARGGQFFRTADHSPEELVLIVVDGRDQAEMLGPLYREIMERGGAAAWSGAEVFIVSV 1251
GG DGRFFD+KTGMFQLSMQA+TT+IWLMEPDVLPGSRFLYLLMHVSMVKDMAGVYGSEGGVMPAAQTRHRSD +AS DR A TPFALWDT TSSARHQ+ HRHLSDA DA+P+GEE +G+GGAA S TAVSVLSPADVLFSQWFLHKDL+RLLFREKW G SG+GG GGPAALALSYSLRRYAG PSYVLPSDPALPEYSGNM AGLPPGKL+ QG+S AAEAAA AGF RRKK FR RD APDQSRRRL RDGAVA XXXXXXXXL SLAS S+RN +LQA SGG RGDA SARGDTDGSPSSL+ RRLDEPQLRAQFRDLSARGGQFFRTADHSPE+LVLIVVDGRDQAE+LGPLYR+I+E G AEVFIV +
Sbjct: 163 GGGGRGSGGDGRFFDVKTGMFQLSMQADTTFIWLMEPDVLPGSRFLYLLMHVSMVKDMAGVYGSEGGVMPAAQTRHRSDTSASFDRGATTPFALWDTPTSSARHQEQEHRHLSDAADAVPSGEEAAAGAPRIPVDGDEGGGVA---LGLGGAAVSGTAVSVLSPADVLFSQWFLHKDLIRLLFREKWAGVASGNGGKGGPAALALSYSLRRYAGVPSYVLPSDPALPEYSGNMSAGLPPGKLDIQGISKAAEAAAVAAGFARRKKTFRRRTRD----APDQSRRRLARDGAVAASXXXXXXXXLGSLASPSDRNSRALQAASGG---RGDA-SARGDTDGSPSSLV-RRLDEPQLRAQFRDLSARGGQFFRTADHSPEDLVLIVVDGRDQAELLGPLYRQIVEGGXXXXXXXAEVFIVLI 570
BLAST of mRNA_E-fasciculatus_F_contig11980.1540.1 vs. uniprot
Match: A0A6H5KSC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC9_9PHAE) HSP 1 Score: 513 bits (1322), Expect = 1.850e-168 Identity = 301/405 (74.32%), Postives = 321/405 (79.26%), Query Frame = 1
Query: 1 GGXXXXXXXDGRFFDLKTGMFQLSMQAETTYIWLMEPDVLPGSRFLYLLMHVSMVKDMAGVYGSEGGVMPAAQTRHRSD-NASLDRQAMTPFALWDTTTSSARHQQ--HRHLSDADDALPAGEEXXXXXXXXXXXXXXXXXXXXXXMGVGGAAGSSTAVSVLSPADVLFSQWFLHKDLVRLLFREKWTGAVSGSGGNGGPAALALSYSLRRYAGAPSYVLPSDPALPEYSGNMLAGLPPGKLNAQGVSIAAEAAAAKAGFVRRKKMFRXXARDGA--AAAPDQSRRRLVRDGAVAXXXXXXXXXXLRSLASSSNRNLSSLQATSGGGGGRGDAFSARGDTDGSPSSLLARRLDEPQLRAQFRDLSARGGQFFRTADHSPEELVLIVVDGRDQAEMLGPLYREIME 1200
GG XXXXXXDG FFD+KTGMFQLSMQA+TT+IWLMEPDV+PGSRFLYLLMHVSMVKDMAGVY SEGGVMPAAQ +HRSD +AS D A TPFALWDT TSSARHQ+ HRHLSDA DA+P+G+E +G+GGAAG TAVSVLSPADVLFSQWFLHKDLVRLLFREKW G SG+GG GGPAALALSYSLRRYAG PSYVLPSDPALPEYSGNM AGLPPGKL+ QG+S AAEAAA AGF RRKKMFR AR GA A+APDQSRRRL SLAS S+RN SLQA SGG RGDA SAR DTD SPSSL+ RRLDEPQLRAQFRDLSARGGQFFRTADHSPE LVLIVVDGRDQAE+LGPLYREI+E
Sbjct: 281 GGGXXXXXXDGSFFDVKTGMFQLSMQADTTFIWLMEPDVVPGSRFLYLLMHVSMVKDMAGVYSSEGGVMPAAQRQHRSDTSASFDGGATTPFALWDTPTSSARHQEQEHRHLSDAADAVPSGDEAAAGAPRIPVDGDEGGGVA---LGLGGAAGLGTAVSVLSPADVLFSQWFLHKDLVRLLFREKWAGVASGNGGKGGPAALALSYSLRRYAGVPSYVLPSDPALPEYSGNMSAGLPPGKLDVQGISKAAEAAAIAAGFARRKKMFRRRARLGAVVASAPDQSRRRL------------------GSLASPSDRNSRSLQAASGG---RGDA-SAREDTDSSPSSLV-RRLDEPQLRAQFRDLSARGGQFFRTADHSPENLVLIVVDGRDQAELLGPLYREIVE 659
BLAST of mRNA_E-fasciculatus_F_contig11980.1540.1 vs. uniprot
Match: A0A7S2Y3B8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3B8_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.170e-11 Identity = 61/213 (28.64%), Postives = 87/213 (40.85%), Query Frame = 1
Query: 55 GMFQLSMQAETTYIWLMEPDVLPGSRFLYLLMHVSMVKDMAGV-YGSEGGVMPAAQTRHRSDNASLDRQAMTPFALWDTTTSSARHQQHRHLSDADDALPAGEEXXXXXXXXXXXXXXXXXXXXXXMGVGGAAGSSTAVSVLSPADVLFSQWFLHKDLVRLLFREKWTGAVSGSGGNGGPAALALSYSLRRYAGAPSYVLPSDPALPEYSGNM 690
G FQL+++A+T Y+W+++ D++PG +FL L H + +K G GS G +MP ++ P T R +D +L AD+L SQWFL D V+LLFRE+W +G L+YSLRRYA APSY++P D P GN+
Sbjct: 181 GRFQLALRAKTRYVWIVDDDIIPGPKFLAALTHTAGIKQFRGAALGSIGWIMPKL----------VETSRYFPSYRTPTDRGGLYFPDLRWDIKSD--------------------------------------------ILYEADLLCSQWFLQVDSVKLLFRERWVTYQTGED-------YFLAYSLRRYANAPSYIMPMDLEDPATWGNV 332
BLAST of mRNA_E-fasciculatus_F_contig11980.1540.1 vs. uniprot
Match: J3LI56_ORYBR (Uncharacterized protein n=16 Tax=Oryzeae TaxID=147380 RepID=J3LI56_ORYBR) HSP 1 Score: 56.6 bits (135), Expect = 6.810e-5 Identity = 57/213 (26.76%), Postives = 82/213 (38.50%), Query Frame = 1
Query: 55 GMFQLSMQAETTYIWLMEPDVLPGSRFLYLLMHVSMV-KDMAGVYGSEGGVMPAAQT--------RHRSDNASLDRQAMTPFALWDTTTSSARHQQHRHLSDADDALPAGEEXXXXXXXXXXXXXXXXXXXXXXMGVGGAAGSSTAVSVLSPADVLFSQWFLHKDLVRLLFREKWTGAVSGSGGNGGPAALALSYSLRRYAGAPSYVLPSDPA 666
G FQ+++Q+E+ +++L++ D++PG+R L +L HV K V GS G ++P Q + RS A L P +D T V + D L S WFL DLV+ LF E ++G L LSY L++Y GA S+VLP DPA
Sbjct: 235 GRFQMALQSESDFVYLLDDDMIPGARMLEILSHVGGTDKYRNAVLGSIGRILPFRQKDFTFPSYRKFRSKEAGL----YLPDPAYDIT----------------------------------------------------------VDRIVQVDFLSSSWFLAADLVKALFIETPFTFMTGED-------LHLSYQLQKYMGAGSFVLPVDPA 378
BLAST of mRNA_E-fasciculatus_F_contig11980.1540.1 vs. uniprot
Match: A0A8B8ZDY5_PHODC (uncharacterized protein LOC103708423 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B8ZDY5_PHODC) HSP 1 Score: 56.6 bits (135), Expect = 6.870e-5 Identity = 58/208 (27.88%), Postives = 83/208 (39.90%), Query Frame = 1
Query: 55 GMFQLSMQAETTYIWLMEPDVLPGSRFLYLLMHVSMV-KDMAGVYGSEGGVMPAAQTRHRSDNASLDRQAMTPFALWDTTTSSARHQQHR----HLSDADDALPAGEEXXXXXXXXXXXXXXXXXXXXXXMGVGGAAGSSTAVSVLSPADVLFSQWFLHKDLVRLLFREKWTGAVSGSGGNGGPAALALSYSLRRYAGAPSYVLPSDP 663
G FQ+++Q E ++++++ D++PG R L +L HV K V GS G ++P F D T S R + + +L D PA + AV + D L S WFL DLV+ LF EK + ++G L LSY L++Y A SYVLP DP
Sbjct: 266 GRFQMALQTEADFVYILDDDMIPGRRMLEILSHVGGTEKYKNAVLGSIGRILP--------------------FRQKDFTFPSYRKFRSKEAGLYLPD-----PAYD---------------------------------IAVERIVQVDFLSSSWFLSADLVKTLFVEKPSTFMTGED-------LHLSYQLQKYRNAGSYVLPVDP 408 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11980.1540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11980.1540.1 >prot_E-fasciculatus_F_contig11980.1540.1 ID=prot_E-fasciculatus_F_contig11980.1540.1|Name=mRNA_E-fasciculatus_F_contig11980.1540.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=417bp GGGGGGGGGDGRFFDLKTGMFQLSMQAETTYIWLMEPDVLPGSRFLYLLMback to top mRNA from alignment at E-fasciculatus_F_contig11980:729..4187+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11980.1540.1 ID=mRNA_E-fasciculatus_F_contig11980.1540.1|Name=mRNA_E-fasciculatus_F_contig11980.1540.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3459bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11980:729..4187+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11980:729..4187+ >mRNA_E-fasciculatus_F_contig11980.1540.1 ID=mRNA_E-fasciculatus_F_contig11980.1540.1|Name=mRNA_E-fasciculatus_F_contig11980.1540.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2502bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11980:729..4187+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |