mRNA_E-fasciculatus_F_contig1198.1538.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: D8LTP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP9_ECTSI) HSP 1 Score: 336 bits (862), Expect = 3.890e-112 Identity = 180/247 (72.87%), Postives = 196/247 (79.35%), Query Frame = 3
Query: 87 MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNFSRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQVDKRTAPAGQPSQFIHTAQGEDTMSLIREEPQLGFDDAADAREPASCSAPSSEDEKTVPLKLVDA 827
M+SDP +G APGSEAAA RDD RH KSF+VDNGTEQQH RD S L HD SSAITMLGSFVAGA VG MICVR+FMF PIVFLLLCGACV VMVV AA+VTKSDSKAG SR GNF SDVLLALFR VREFN YQ T KVK T QEA GK Q EMQK+GICD+V TRA SLW+QVDKRTAPA QPS+F+H AQG+DT+SL REEPQ GFD+A DA + A CS SSE+EKT P+KL DA
Sbjct: 1 MQSDPRHQGSAPGSEAAANRDDSHRHAKSFEVDNGTEQQHHRDGSILVHDESSAITMLGSFVAGASVGTMICVRLFMFAPIVFLLLCGACVAVMVVXXXXXXAAVVTKSDSKAGTISRRAGNFISDVLLALFRGVREFNRTYQLTDKVKATVQEAAGKVQVEMQKVGICDHVMTRACSLWDQVDKRTAPAAQPSKFVHGAQGQDTISLFREEPQPGFDNAGDAPKSAPCSPSSSENEKTAPVKLSDA 247
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI) HSP 1 Score: 290 bits (742), Expect = 2.650e-94 Identity = 166/247 (67.21%), Postives = 186/247 (75.30%), Query Frame = 3
Query: 87 MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNFSRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQVDKRTAPAGQPSQFIHTAQGEDTMSLIREEPQLGFDDAADAREPASCSAPSSEDEKTVPLKLVDA 827
MRS P + APG EAAA R+D + TEQ+H DESTLAHD SSAI +LGSFVAGALVGA++CVRVFMF P V VVLLCGAGAA+ TKSDSKAG SR VG +T DV LALFRVVREFN+KYQ T KV++TAQEA GK +AE+Q+LGICD VKTRARSLWEQVDKRTAPAGQP I AQG+DT+SL+ EEPQLGFDDAADA E SCS+ SSEDEKTV L+L DA
Sbjct: 1 MRSYPRHQVSAPGHEAAAVRNDSYLD---------TEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTV------------VVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDKRTAPAGQPP--IRAAQGQDTISLMMEEPQLGFDDAADALESKSCSSSSSEDEKTVRLRLFDA 224
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: A0A6H5JUV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE) HSP 1 Score: 206 bits (523), Expect = 5.730e-62 Identity = 118/193 (61.14%), Postives = 133/193 (68.91%), Query Frame = 3
Query: 87 MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNF----------SRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQV 635
M SDP G APG EA A R+DP+ TEQ+H DESTLAHD SSAI MLGSFVAGAL+GA+IC RVFMF P+V VVLLCGAGAA+ T SDS+ G F SRGVG +TSDV LALFRVVREFN+KYQ KVK+TAQEA K +AE+Q++GICD VKTRARSLWEQV
Sbjct: 1 MHSDPRHRGSAPGHEAVAVRNDPYLD---------TEQEHHHDESTLAHDESSAIIMLGSFVAGALMGAIICARVFMFAPMV------------VVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI) HSP 1 Score: 168 bits (426), Expect = 7.470e-47 Identity = 100/187 (53.48%), Postives = 123/187 (65.78%), Query Frame = 3
Query: 195 EQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNFSRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQVDKRTAPAGQPSQFIHTAQGEDTMSLIREEPQLGFDDAADA 755
EQ H + +AHD +S I + GSF+AGALVG +IC F VVLL GAGAA +TKSDSK G FSR VG +SD+LLA+FR+ RE+NHK++ T K KV A+EA GK +M+KLGI DNVK RA SLW+QVDKRTAPAGQ S I AQG+D +S + + Q+ FD A DA
Sbjct: 38 EQPH---QEVIAHDEASGIIVFGSFIAGALVGVVICAPAF------------------VVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQAS--IQAAQGQD-LSQVTDGTQIPFDGAVDA 200
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: A0A6H5JZU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU5_9PHAE) HSP 1 Score: 158 bits (400), Expect = 2.140e-44 Identity = 86/117 (73.50%), Postives = 95/117 (81.20%), Query Frame = 3
Query: 87 MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNFS 437
M+S+P +G APGSEAAA RDD RH KSF+VDNGTEQQH+RD S LAHD SSAITMLGSFVAGA VGAMICVR+F+ PIVFLLLCGACV V VVL AGAA+VTKS SK + S
Sbjct: 1 MQSNPRHQGSAPGSEAAANRDDSCRHAKSFEVDNGTEQQHNRDRSILAHDESSAITMLGSFVAGASVGAMICVRLFVLAPIVFLLLCGACVAVTVVLXXXAGAAVVTKSHSKVESIS 117
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: A0A6H5JV13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV13_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.070e-23 Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 3
Query: 420 KAGNFSRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQVDK 641
K G SR GNFTSDVLLAL RVVRE N Q + KVKVT QEA K QAEMQK+GICD+V TRARSLW+QVDK
Sbjct: 20 KVGTISRRAGNFTSDVLLALLRVVREINRTCQLSDKVKVTVQEAARKVQAEMQKVGICDHVMTRARSLWDQVDK 93 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1198.1538.1 >prot_E-fasciculatus_F_contig1198.1538.1 ID=prot_E-fasciculatus_F_contig1198.1538.1|Name=mRNA_E-fasciculatus_F_contig1198.1538.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=248bp MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHDback to top mRNA from alignment at E-fasciculatus_F_contig1198:4049..8110- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1198.1538.1 ID=mRNA_E-fasciculatus_F_contig1198.1538.1|Name=mRNA_E-fasciculatus_F_contig1198.1538.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4062bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1198:4049..8110- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1198:4049..8110- >mRNA_E-fasciculatus_F_contig1198.1538.1 ID=mRNA_E-fasciculatus_F_contig1198.1538.1|Name=mRNA_E-fasciculatus_F_contig1198.1538.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1198:4049..8110- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |