mRNA_E-fasciculatus_F_contig1198.1538.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1198.1538.1
Unique NamemRNA_E-fasciculatus_F_contig1198.1538.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: D8LTP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP9_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 3.890e-112
Identity = 180/247 (72.87%), Postives = 196/247 (79.35%), Query Frame = 3
Query:   87 MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNFSRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQVDKRTAPAGQPSQFIHTAQGEDTMSLIREEPQLGFDDAADAREPASCSAPSSEDEKTVPLKLVDA 827
            M+SDP  +G APGSEAAA RDD  RH KSF+VDNGTEQQH RD S L HD SSAITMLGSFVAGA VG MICVR+FMF PIVFLLLCGACV VMVV      AA+VTKSDSKAG  SR  GNF SDVLLALFR VREFN  YQ T KVK T QEA GK Q EMQK+GICD+V TRA SLW+QVDKRTAPA QPS+F+H AQG+DT+SL REEPQ GFD+A DA + A CS  SSE+EKT P+KL DA
Sbjct:    1 MQSDPRHQGSAPGSEAAANRDDSHRHAKSFEVDNGTEQQHHRDGSILVHDESSAITMLGSFVAGASVGTMICVRLFMFAPIVFLLLCGACVAVMVVXXXXXXAAVVTKSDSKAGTISRRAGNFISDVLLALFRGVREFNRTYQLTDKVKATVQEAAGKVQVEMQKVGICDHVMTRACSLWDQVDKRTAPAAQPSKFVHGAQGQDTISLFREEPQPGFDNAGDAPKSAPCSPSSSENEKTAPVKLSDA 247          
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 2.650e-94
Identity = 166/247 (67.21%), Postives = 186/247 (75.30%), Query Frame = 3
Query:   87 MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNFSRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQVDKRTAPAGQPSQFIHTAQGEDTMSLIREEPQLGFDDAADAREPASCSAPSSEDEKTVPLKLVDA 827
            MRS P  +  APG EAAA R+D +           TEQ+H  DESTLAHD SSAI +LGSFVAGALVGA++CVRVFMF P V            VVLLCGAGAA+ TKSDSKAG  SR VG +T DV LALFRVVREFN+KYQ T KV++TAQEA GK +AE+Q+LGICD VKTRARSLWEQVDKRTAPAGQP   I  AQG+DT+SL+ EEPQLGFDDAADA E  SCS+ SSEDEKTV L+L DA
Sbjct:    1 MRSYPRHQVSAPGHEAAAVRNDSYLD---------TEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTV------------VVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDKRTAPAGQPP--IRAAQGQDTISLMMEEPQLGFDDAADALESKSCSSSSSEDEKTVRLRLFDA 224          
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: A0A6H5JUV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 5.730e-62
Identity = 118/193 (61.14%), Postives = 133/193 (68.91%), Query Frame = 3
Query:   87 MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNF----------SRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQV 635
            M SDP   G APG EA A R+DP+           TEQ+H  DESTLAHD SSAI MLGSFVAGAL+GA+IC RVFMF P+V            VVLLCGAGAA+ T SDS+ G F          SRGVG +TSDV LALFRVVREFN+KYQ   KVK+TAQEA  K +AE+Q++GICD VKTRARSLWEQV
Sbjct:    1 MHSDPRHRGSAPGHEAVAVRNDPYLD---------TEQEHHHDESTLAHDESSAIIMLGSFVAGALMGAIICARVFMFAPMV------------VVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172          
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 7.470e-47
Identity = 100/187 (53.48%), Postives = 123/187 (65.78%), Query Frame = 3
Query:  195 EQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNFSRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQVDKRTAPAGQPSQFIHTAQGEDTMSLIREEPQLGFDDAADA 755
            EQ H   +  +AHD +S I + GSF+AGALVG +IC   F                  VVLL GAGAA +TKSDSK G FSR VG  +SD+LLA+FR+ RE+NHK++ T K KV A+EA GK   +M+KLGI DNVK RA SLW+QVDKRTAPAGQ S  I  AQG+D +S + +  Q+ FD A DA
Sbjct:   38 EQPH---QEVIAHDEASGIIVFGSFIAGALVGVVICAPAF------------------VVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQAS--IQAAQGQD-LSQVTDGTQIPFDGAVDA 200          
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: A0A6H5JZU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU5_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 2.140e-44
Identity = 86/117 (73.50%), Postives = 95/117 (81.20%), Query Frame = 3
Query:   87 MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHDGSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCGAGAAIVTKSDSKAGNFS 437
            M+S+P  +G APGSEAAA RDD  RH KSF+VDNGTEQQH+RD S LAHD SSAITMLGSFVAGA VGAMICVR+F+  PIVFLLLCGACV V VVL   AGAA+VTKS SK  + S
Sbjct:    1 MQSNPRHQGSAPGSEAAANRDDSCRHAKSFEVDNGTEQQHNRDRSILAHDESSAITMLGSFVAGASVGAMICVRLFVLAPIVFLLLCGACVAVTVVLXXXAGAAVVTKSHSKVESIS 117          
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Match: A0A6H5JV13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV13_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.070e-23
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 3
Query:  420 KAGNFSRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKVTAQEAVGKAQAEMQKLGICDNVKTRARSLWEQVDK 641
            K G  SR  GNFTSDVLLAL RVVRE N   Q + KVKVT QEA  K QAEMQK+GICD+V TRARSLW+QVDK
Sbjct:   20 KVGTISRRAGNFTSDVLLALLRVVREINRTCQLSDKVKVTVQEAARKVQAEMQKVGICDHVMTRARSLWDQVDK 93          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1198.1538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LTP9_ECTSI3.890e-11272.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTQ0_ECTSI2.650e-9467.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUV7_9PHAE5.730e-6261.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP8_ECTSI7.470e-4753.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JZU5_9PHAE2.140e-4473.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV13_9PHAE1.070e-2371.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1198contigE-fasciculatus_F_contig1198:4049..8110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003270.1
Exons4
Model size1143
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1198.1538.1prot_E-fasciculatus_F_contig1198.1538.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1198 4362..8024 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.471752-UTR-E-fasciculatus_F_contig1198:4048..43611622927706.471752-UTR-E-fasciculatus_F_contig1198:4048..4361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1198 4049..4361 -
1695995659.0562496-UTR-E-fasciculatus_F_contig1198:4048..43611695995659.0562496-UTR-E-fasciculatus_F_contig1198:4048..4361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1198 4049..4361 -
1622927706.5498834-UTR-E-fasciculatus_F_contig1198:8024..81101622927706.5498834-UTR-E-fasciculatus_F_contig1198:8024..8110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1198 8025..8110 -
1695995659.1071055-UTR-E-fasciculatus_F_contig1198:8024..81101695995659.1071055-UTR-E-fasciculatus_F_contig1198:8024..8110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1198 8025..8110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.4880776-CDS-E-fasciculatus_F_contig1198:4361..45501622927706.4880776-CDS-E-fasciculatus_F_contig1198:4361..4550Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 4362..4550 -
1695995659.0649586-CDS-E-fasciculatus_F_contig1198:4361..45501695995659.0649586-CDS-E-fasciculatus_F_contig1198:4361..4550Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 4362..4550 -
1622927706.509487-CDS-E-fasciculatus_F_contig1198:5122..52361622927706.509487-CDS-E-fasciculatus_F_contig1198:5122..5236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 5123..5236 -
1695995659.0737169-CDS-E-fasciculatus_F_contig1198:5122..52361695995659.0737169-CDS-E-fasciculatus_F_contig1198:5122..5236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 5123..5236 -
1622927706.525968-CDS-E-fasciculatus_F_contig1198:5632..57371622927706.525968-CDS-E-fasciculatus_F_contig1198:5632..5737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 5633..5737 -
1695995659.0830574-CDS-E-fasciculatus_F_contig1198:5632..57371695995659.0830574-CDS-E-fasciculatus_F_contig1198:5632..5737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 5633..5737 -
1622927706.538028-CDS-E-fasciculatus_F_contig1198:7688..80241622927706.538028-CDS-E-fasciculatus_F_contig1198:7688..8024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 7689..8024 -
1695995659.0958383-CDS-E-fasciculatus_F_contig1198:7688..80241695995659.0958383-CDS-E-fasciculatus_F_contig1198:7688..8024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 7689..8024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1198.1538.1

>prot_E-fasciculatus_F_contig1198.1538.1 ID=prot_E-fasciculatus_F_contig1198.1538.1|Name=mRNA_E-fasciculatus_F_contig1198.1538.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=248bp
MRSDPTQEGKAPGSEAAAARDDPFRHVKSFQVDNGTEQQHDRDESTLAHD
GSSAITMLGSFVAGALVGAMICVRVFMFEPIVFLLLCGACVTVMVVLLCG
AGAAIVTKSDSKAGNFSRGVGNFTSDVLLALFRVVREFNHKYQFTGKVKV
TAQEAVGKAQAEMQKLGICDNVKTRARSLWEQVDKRTAPAGQPSQFIHTA
QGEDTMSLIREEPQLGFDDAADAREPASCSAPSSEDEKTVPLKLVDA*
back to top

mRNA from alignment at E-fasciculatus_F_contig1198:4049..8110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1198.1538.1 ID=mRNA_E-fasciculatus_F_contig1198.1538.1|Name=mRNA_E-fasciculatus_F_contig1198.1538.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4062bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1198:4049..8110- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCGTAACCCACGAACCTTTCACTCCTGCCCTCTCAGTCACCGAACGCA CAGCTCCACGCACGTACATTGTAGCCGAAAACGACCATGCGCAGTGACCC AACACAGGAAGGCAAGGCACCCGGTTCGGAGGCAGCTGCGGCACGGGACG ATCCATTCCGCCATGTCAAATCTTTCCAAGTGGACAACGGCACCGAGCAA CAGCATGATCGTGATGAATCTACTCTCGCACATGACGGGTCAAGCGCTAT CACCATGCTCGGCTCCTTCGTGGCGGGTGCATTGGTCGGGGCAATGATCT GCGTACGGGTGTTCATGTTCGAGCCCATCGTGTTCTTGCTTCTCTGTGGA GCTTGTGTGACGGTCATGGTCGTGCTTCTCTGCGGGGCCGGGGCGGCGAT CGTCACCAAGTCAGACAGCAAGGTGGGAAATTGGTTGGGAGGCTACGATG CGTTCATTCCCTCATGTCTACCATGTATCCAGGAGTTGTTGCGCTAATCA TGTTAACTAGATACTCAGAGGATATCGTCTGTCGCTGATATAAGACTTGA TTTTAGAGTGCACCCACCTGGGGCGAGTTGTTTCTTTTCCTCGCAACACA TGCTGCAACAGCATGCCAGCCCTTTGACGTCATCACACGTCTGCATCAAG TTTTCGTGCTGCGACAATAATGTCGTCGAACTTTGCCGCACCCGTATATC ACGATGCACCTTCCTCCGAGCTCAAACTGTTATCTACTGCTCGGGGTGGC GCTCAACTTCCCATCTACCCCCCGGTTCAGACGATTACGCGGGTGTAAAG GGGATACCGCTTTTCACTGTGTATCTTGATTCTGCACGTGCGTTCGTGTG CATGCGACCGCTTCTCACACCACAATATCCCATTGAAAACCCCAGGTTTA CCGCTCCGGAACATGTCCACCATACATTTATGAAAACAAACGATCGCCTT CCTCGGTATGAGAGCCTACGCCGAGCAAGTACAGATCTACATATGTACCG GACGTGGGGCCCTCACATCGTGAACCCCAACTTCGCGTTACTGCTATTTT TCGCAACAATATTTTTAGTCAGCGTTTCTGCTTGCTCTGCCTCTCGAAGC CCAGCAGCCATCCCACGCATTCTGGCCGCCCGTCCCATTGGGGGGTGGGG GGGCAATCGTTCTCCCTGATATCCTTTGCGCATTGACTGACCTACACTAT TGTCTAGTCAAACATGGGCTCTAATGCGAGGGAGTTTTGAACTTGCAGAT TCAAGCAGACGTCCGGTTCTTGCAATTAATGCAGAGCACATCCGTCGAGG TGATACATCGCAGGATGGTGCGTGAAGTCGTCACTTTGATTGGACAGACA AGGATAGAGTGGGGCGCTTGCCGCATATGTAGAATCTCAAGAGTCTAACC TCGCTCAAGCTGGAGGCCGCGTGAACAACCATCATCATCAATCGTATGTT GGTCGGCAAATAAGCGGAGATCATTCGATGGTTATTGGGTAGCCTATGCA AGAAACCGGGCGGCCTTCAGAGTGGTGGTCTTGCCTCACCAGGTTAAGCG CGGCATCCGGCAAGCGAAAAGGTTTAGACAAATGGGGTCATGGTGCCTTG TCTCAACGATTTTTCGCCGATAGGGGGGGGGGAGTATTGCGCGTTGAGGG CCGCCAGATGCTCCTTCACCTGGATTCGGCGAGCTCGCCTTTCGACTTGT CGAAAATCTTTCCTTGTGTCTGCAACTGAGGCCCCTCTTCATGTCGTGCT ACCTTTGGAATAAATCTTGTCAAGATTTGCTCGGAACAAGTGTTCGCCAA GATATGTAGTATCGCACATTACGAGGAAACAAGTTAAATGTTGTGGGATG TTGAAAAGGCGGCGTGTTGATAAAAGGCGCAACTTCCACTTGGTCGAGAA AAAAACATGGTGTGATGAAAACTGAGCACGACGCAGTCCTAGAAGGCGTC ACCCCTCCCATCGCTGCATAGACTCAACACTCCGGGTGGATTCTAGCAGT GGGCGCCCACCTGGGGCTCAACAAAAGGCGACGTTGCTCGCGCGGTCATG CAGGCGGAGAAACAACACTGTTCCGCTGCCTGTCCAACGGCCAAAAATGT GCATCAACTCGAGAGGCGATGACAACCGTGCACGTATCTTACAGCGTAGT AGGCGTACCGAGGTCAAACCTTCGGTGCCGTCATATGCACTCACGGGTCT GTGTGGGGTGCAAACGGCTTGGGTATGGGGTGATTCGATCAAGAGAGAGA AGCTCCCCACAAAACTGAGCTGTTTTGGAAGAACATCGTACACCTCAAGA AAGGGCAACGTACCAGTCTTGGTGCAGTCATACGCACATGATTTATTTGC TTCGCATCATCTGCCCGTCCCAGGCCGGCAACTTTTCGCGTGGAGTGGGC AATTTCACCTCCGACGTTCTCCTAGCCTTGTTTAGGGTCGTTCGAGAGTT CAACCACAAGTACCAGTTCACGGGCAAGGTGAGAACCAAATTTACCCAAT GTAACGTCTGACCTGCTGCCATCGCTCCGTGGACCTTGCAGCGATACAAA TAGAAGGATTGTGGTAAAACTTGGAGACTTAGCCATTTGGTTTTGCCCGG TCCTTGGCGCTTTTTCCAAGCGCTCCATGGACATTCTGCTAGACGCGTTG GACTAGGGTTTCGACACGAACAGCCGCTTCAGGCTTGCCCGACCTAACCT TTTTCGAACGTTTTCTTCGTTTGTGGTTTATTGGATTGGTCTCGAGTTGT GGGGGGGATGGAGAAACACGCGTACTGAGCACCAATTCTACCGACCCCGG TGTATTCAATTTGACACCAAAAGTAGCGTATTTGGCCGTTAACTCTCCTG GGCTGTTTTGTGCTTCCTTGCCAGGTGAAGGTTACCGCGCAAGAAGCGGT GGGGAAGGCACAAGCCGAGATGCAAAAGCTCGGTATCTGTGACAACGTCA AGACCAGGGCACGATCCCTGTGGGAACAAGTCGACAAGGTAAGAAAGGCT CACCACTAAATTGTTTCTAGAATCGAATCCAACAGCATTGCTGCAGAATC CCGGAAAGAGAGACAACACGCGCTGCCGTTTTTCTGCAGCCGCTGCGAGT GACTGTCATGTCCTCGACACATGGAAGCCATAAACGTTCACGGCAAGACC CGATAGGGGGTAGAACCCATAGGTGAACCACCAGTAGAGCTTGACCGCGA CGGGTTGAGGATATTTGCTCACGCAACCGTACACGGCAAAATTCCACAGA CGACGTTAACACGTATCGCTGCGGTTGGAAAACAAATGCGGAAGTGTGCA AACCTCGCCTCCCGCCCTCAATTTCCTCTCTTATGGTCCTTTGGCTACCG TCCGACCTGCTGCCTGCTTCAGGACTTGGCGATTAAGTAGCTCCTGGTAA TAAGGGTATCCACGAACGCGAAGGTATGCATGCACAGTCCCTGGTCATAC TCCCCTTGAAGTGCATTCCTCGCCTCATCCGTCGCTCCCGTCCTGTCGTT GGCGAAACGTCTGGTCTCTCGTCTGTTCCGCGTGTCGCACACTCCTCGTC ACGTTTCCAGCGGACCGCCCCAGCTGGTCAACCTTCTCAATTTATCCATA CTGCACAAGGGGAGGACACGATGAGCCTGATAAGGGAAGAACCCCAGCTT GGTTTCGACGACGCGGCGGATGCGCGCGAACCAGCGTCTTGTTCCGCGCC ATCCTCCGAAGACGAGAAGACGGTTCCACTAAAGCTGGTCGACGCTTAGT CCAGCGCCAACGCATTGACCACGCTGCAGACAGTCTCTGGGCAAACCCGC GTATACTCGAATAGATGGGGTGGAAAGTAAGCCTTGGGTTGTCACCACGA TTGCGACTACCCGGACAAACGTCCCCGCGTTGGTCATGTAGGTCGAGCGC TCAGGGTTATATATGTAGACAATTAACGAGCGTCTTGCAGCTCCACCGTC AAGCCCTCTGAGGCTGGCCAGTCGTCGCACCGCAGTTTATACGAAGAGTA TGCGCGTTGAACGTTTGATTGCGCGGTCCCGTGGGGTGCGCAGGAAGTAG TATATGTCGAAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1198:4049..8110-

>mRNA_E-fasciculatus_F_contig1198.1538.1 ID=mRNA_E-fasciculatus_F_contig1198.1538.1|Name=mRNA_E-fasciculatus_F_contig1198.1538.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1198:4049..8110- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCAGTGACCCAACACAGGAAGGCAAGGCACCCGGTTCGGAGGCAGC
TGCGGCACGGGACGATCCATTCCGCCATGTCAAATCTTTCCAAGTGGACA
ACGGCACCGAGCAACAGCATGATCGTGATGAATCTACTCTCGCACATGAC
GGGTCAAGCGCTATCACCATGCTCGGCTCCTTCGTGGCGGGTGCATTGGT
CGGGGCAATGATCTGCGTACGGGTGTTCATGTTCGAGCCCATCGTGTTCT
TGCTTCTCTGTGGAGCTTGTGTGACGGTCATGGTCGTGCTTCTCTGCGGG
GCCGGGGCGGCGATCGTCACCAAGTCAGACAGCAAGATGCGCAGTGACCC
AACACAGGAAGGCAAGGCACCCGGTTCGGAGGCAGCTGCGGCACGGGACG
ATCCATTCCGCCATGTCAAATCTTTCCAAGTGGACAACGGCACCGAGCAA
CAGCATGATCGTGATGAATCTACTCTCGCACATGACGGGTCAAGCGCTAT
CACCATGCTCGGCTCCTTCGTGGCGGGTGCATTGGTCGGGGCAATGATCT
GCGTACGGGTGTTCATGTTCGAGCCCATCGTGTTCTTGCTTCTCTGTGGA
GCTTGTGTGACGGTCATGGTCGTGCTTCTCTGCGGGGCCGGGGCGGCGAT
CGTCACCAAGTCAGACAGCAAGGCCGGCAACTTTTCGCGTGGAGTGGGCA
ATTTCACCTCCGACGTTCTCCTAGCCTTGTTTAGGGTCGTTCGAGAGTTC
AACCACAAGTACCAGTTCACGGGCAAGGCCGGCAACTTTTCGCGTGGAGT
GGGCAATTTCACCTCCGACGTTCTCCTAGCCTTGTTTAGGGTCGTTCGAG
AGTTCAACCACAAGTACCAGTTCACGGGCAAGGTGAAGGTTACCGCGCAA
GAAGCGGTGGGGAAGGCACAAGCCGAGATGCAAAAGCTCGGTATCTGTGA
CAACGTCAAGACCAGGGCACGATCCCTGTGGGAACAAGTCGACAAGGTGA
AGGTTACCGCGCAAGAAGCGGTGGGGAAGGCACAAGCCGAGATGCAAAAG
CTCGGTATCTGTGACAACGTCAAGACCAGGGCACGATCCCTGTGGGAACA
AGTCGACAAGCGGACCGCCCCAGCTGGTCAACCTTCTCAATTTATCCATA
CTGCACAAGGGGAGGACACGATGAGCCTGATAAGGGAAGAACCCCAGCTT
GGTTTCGACGACGCGGCGGATGCGCGCGAACCAGCGTCTTGTTCCGCGCC
ATCCTCCGAAGACGAGAAGACGGTTCCACTAAAGCTGGTCGACGCTTAGC
GGACCGCCCCAGCTGGTCAACCTTCTCAATTTATCCATACTGCACAAGGG
GAGGACACGATGAGCCTGATAAGGGAAGAACCCCAGCTTGGTTTCGACGA
CGCGGCGGATGCGCGCGAACCAGCGTCTTGTTCCGCGCCATCCTCCGAAG
ACGAGAAGACGGTTCCACTAAAGCTGGTCGACGCTTAG
back to top