mRNA_E-fasciculatus_F_contig1198.1539.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1198.1539.1
Unique NamemRNA_E-fasciculatus_F_contig1198.1539.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1198.1539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1198contigE-fasciculatus_F_contig1198:11881..12482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size582
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1198.1539.1prot_E-fasciculatus_F_contig1198.1539.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1198 12109..12482 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.3835392-UTR-E-fasciculatus_F_contig1198:11880..121081622927706.3835392-UTR-E-fasciculatus_F_contig1198:11880..12108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1198 11881..12108 +
1695995659.0278413-UTR-E-fasciculatus_F_contig1198:11880..121081695995659.0278413-UTR-E-fasciculatus_F_contig1198:11880..12108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1198 11881..12108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.4021726-CDS-E-fasciculatus_F_contig1198:12108..122741622927706.4021726-CDS-E-fasciculatus_F_contig1198:12108..12274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 12109..12274 +
1695995659.0356812-CDS-E-fasciculatus_F_contig1198:12108..122741695995659.0356812-CDS-E-fasciculatus_F_contig1198:12108..12274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 12109..12274 +
1622927706.4191496-CDS-E-fasciculatus_F_contig1198:12294..124821622927706.4191496-CDS-E-fasciculatus_F_contig1198:12294..12482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 12295..12482 +
1695995659.0454755-CDS-E-fasciculatus_F_contig1198:12294..124821695995659.0454755-CDS-E-fasciculatus_F_contig1198:12294..12482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1198 12295..12482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1198.1539.1

>prot_E-fasciculatus_F_contig1198.1539.1 ID=prot_E-fasciculatus_F_contig1198.1539.1|Name=mRNA_E-fasciculatus_F_contig1198.1539.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp
MYGFFPVLRRNLGKKIFFLPPAKPTFALRCAQKPPSPEPRWRNPVTAVDC
CGSIFSTTAALPDEQQSPTRLDASNQQKHTRALHTDLKSSLDSTALYAQL
PTLLSDLVTAAAPAPKSS
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mRNA from alignment at E-fasciculatus_F_contig1198:11881..12482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1198.1539.1 ID=mRNA_E-fasciculatus_F_contig1198.1539.1|Name=mRNA_E-fasciculatus_F_contig1198.1539.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=602bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1198:11881..12482+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGTGCCAGGCTAACTACAGTACCGTCAAAGGAGAACCCCCATCGCACGA
CCGAAGCCGCAAAGAGACCTTCAACGTGTAGTACGATGGCGAAACGCGGA
AAAGGGTCAGAAACGCGCATGACTGGAGACGGCGCGCCACCAACCCCTTC
CATCTTCAACGGTTATGAGGGTGTCATGTTTCGTGCCTGGCGGGAGGCCC
ACCACCGCTCCGGGGGATTGTCCACGCCATGTACGGCTTTTTTCCTGTTT
TGCGGCGGAACTTGGGAAAGAAGATATTCTTCCTGCCACCAGCAAAGCCT
ACATTTGCACTGCGCTGTGCACAAAAGCCACCTTCTCCGGAGCCGAGATG
GAGAAATCCTGTCACTGCTGTAGACTGCTGCGGGAGTATATTTTCCAAAA
GGGGATACACGCTGCCACTACAGCTGCTCTGCCAGATGAGCAGCAAAGTC
CAACTCGCTTGGACGCATCGAATCAACAGAAACACACAAGAGCGCTACAC
ACAGACTTGAAGTCTAGTCTAGACAGCACAGCTCTGTATGCTCAACTTCC
CACCTTGCTGTCTGACTTGGTCACGGCCGCCGCGCCTGCCCCGAAGAGTA
GC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1198:11881..12482+

>mRNA_E-fasciculatus_F_contig1198.1539.1 ID=mRNA_E-fasciculatus_F_contig1198.1539.1|Name=mRNA_E-fasciculatus_F_contig1198.1539.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1198:11881..12482+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACGGCTTTTTTCCTGTTTTGCGGCGGAACTTGGGAAAGAAGATATT
CTTCCTGCCACCAGCAAAGCCTACATTTGCACTGCGCTGTGCACAAAAGC
CACCTTCTCCGGAGCCGAGATGGAGAAATCCTGTCACTGCTGTAGACTGC
TGCGGGAGTATATTTTATGTACGGCTTTTTTCCTGTTTTGCGGCGGAACT
TGGGAAAGAAGATATTCTTCCTGCCACCAGCAAAGCCTACATTTGCACTG
CGCTGTGCACAAAAGCCACCTTCTCCGGAGCCGAGATGGAGAAATCCTGT
CACTGCTGTAGACTGCTGCGGGAGTATATTTTCCACTACAGCTGCTCTGC
CAGATGAGCAGCAAAGTCCAACTCGCTTGGACGCATCGAATCAACAGAAA
CACACAAGAGCGCTACACACAGACTTGAAGTCTAGTCTAGACAGCACAGC
TCTGTATGCTCAACTTCCCACCTTGCTGTCTGACTTGGTCACGGCCGCCG
CGCCTGCCCCGAAGAGTAGCCCACTACAGCTGCTCTGCCAGATGAGCAGC
AAAGTCCAACTCGCTTGGACGCATCGAATCAACAGAAACACACAAGAGCG
CTACACACAGACTTGAAGTCTAGTCTAGACAGCACAGCTCTGTATGCTCA
ACTTCCCACCTTGCTGTCTGACTTGGTCACGGCCGCCGCGCCTGCCCCGA
AGAGTAGC
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