mRNA_E-fasciculatus_F_contig11972.1536.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: D8LDQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ3_ECTSI) HSP 1 Score: 200 bits (509), Expect = 8.100e-57 Identity = 91/165 (55.15%), Postives = 121/165 (73.33%), Query Frame = 1
Query: 319 LAILVAYWSLVPLCTTCGGGVSDALSSSSSAAGGVEVASTEGSNVGYDVRPFSTLRINQLQVYGTHNSYHRRTNIPALGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSDLNPLHHVIFMDIEMKLTGDFLRV 813
LA+ + +W+L P+CT+C SS + V A +G+ STL INQLQV GTHNSYHRRT +PAL +W Y +PS+ AQLDAG+RHLELD+HYDWKTGRWFV+H+S++DA+SSC+CL CL E+R WSD +P HH++F++IE+KLTGDFL++
Sbjct: 165 LAVAIFFWALSPVCTSC------VRSSGQLPSSVVPAADEQGT---------STLYINQLQVIGTHNSYHRRTYVPALSDYWDYHYPSLTAQLDAGIRHLELDIHYDWKTGRWFVFHLSILDAVSSCNCLSVCLAEVREWSDTHPTHHILFIEIELKLTGDFLQL 314
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: A0A6H5L092_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L092_9PHAE) HSP 1 Score: 195 bits (496), Expect = 3.850e-55 Identity = 91/165 (55.15%), Postives = 120/165 (72.73%), Query Frame = 1
Query: 319 LAILVAYWSLVPLCTTCGGGVSDALSSSSSAAGGVEVASTEGSNVGYDVRPFSTLRINQLQVYGTHNSYHRRTNIPALGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSDLNPLHHVIFMDIEMKLTGDFLRV 813
LA+ + +W+L P+ T+C SS ++ V A +G+ STL INQLQV GTHNSYHRRT +PAL +W Y++PS+ AQLDAG+RHLELD HYDWKTGRWFV+H+S++DA+SSC+CL CL EIR WSD +P HH++F++IE KLTGDFL++
Sbjct: 164 LAVAIFFWALSPVRTSC------VRSSGQLSSSVVPAADEQGT---------STLYINQLQVIGTHNSYHRRTFVPALSDYWDYQYPSLTAQLDAGIRHLELDTHYDWKTGRWFVFHLSILDAVSSCNCLSVCLAEIREWSDTHPTHHILFIEIEFKLTGDFLQL 313
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: A0A6H5KYL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYL9_9PHAE) HSP 1 Score: 121 bits (303), Expect = 7.010e-31 Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 1
Query: 481 LRINQLQVYGTHNSYHRRTNIPALGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGR 654
L N L+VYGTHNSYHRRTNIP LGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGR
Sbjct: 80 LATNPLKVYGTHNSYHRRTNIPGLGKFWKYEFPSIPAQLDAGVRHLELDVHYDWKTGR 137
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: D8LDQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ8_ECTSI) HSP 1 Score: 117 bits (292), Expect = 1.430e-27 Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 1
Query: 652 RWFVYHISVVDALSSCHCLLSCLQEIRAWSDLNPLHHVIFMDIEMKLTGDFLRV 813
RWFVYHISVVDALSSCHCLLSCL+EIRAWSDLNP+HHVIFMDIEMKLTGDFLR+
Sbjct: 9 RWFVYHISVVDALSSCHCLLSCLEEIRAWSDLNPMHHVIFMDIEMKLTGDFLRI 62
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: A0A356F7M8_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356F7M8_9BACT) HSP 1 Score: 90.9 bits (224), Expect = 2.330e-17 Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 481 LRINQLQVYGTHNSYHRRTNIPALGKFWKYEFPSIPAQL-DAGVRHLELDVHYDWKTGRWF-VYHISVVDALSSCHCLLSCLQEIRAWSDLNPLHHVIFMDIEMK 789
LR+N LQV GTHNSYHRR +G+ YE + QL + GVR +ELD+H + R + VYH+ ++D+ S+C L+ CL+ ++ WSD NP HH +F+ IE K
Sbjct: 68 LRLNHLQVKGTHNSYHRRPAFSLVGEH-NYEQAPLDVQLGEYGVRAVELDIH---PSSRGYEVYHLPLIDSRSTCALLVDCLKVLKRWSDSNPGHHPLFIWIEPK 168
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: A0A850BIE8_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BIE8_9DELT) HSP 1 Score: 90.5 bits (223), Expect = 2.670e-17 Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 457 YDVRPFSTLRINQLQVYGTHNSYHRRTNIPALGKF--WKYEFPSIPAQLDA-GVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSDLNPLHHVIFMDIEMK 789
+D LR+N +Q+ GTHNSYH I G W+Y + QL + GVR +ELD+HY+ G + VYHI +D ++C CL++++ WSD + HH IF+ IE K
Sbjct: 46 FDYPKDDVLRLNHIQMKGTHNSYH----IAPEGGIDPWRYTHAPLDVQLGSQGVRKVELDIHYNEDAGHFEVYHIGFLDEGTTCRRFTDCLKQMKTWSDAHAAHHTIFVQIEPK 155
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: A0A2E6NLZ9_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6NLZ9_9BACT) HSP 1 Score: 90.5 bits (223), Expect = 2.970e-17 Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 481 LRINQLQVYGTHNSYHRRTNIPALGKFWKYEFPSIPAQL-DAGVRHLELDVHYDWKTGRWF-VYHISVVDALSSCHCLLSCLQEIRAWSDLNPLHHVIFMDIEMK 789
LR+N LQV GTHNSYHRR AL + YE + QL + GVR +ELD+H + R + VYH+ V+D+ S+C L+ CL ++ WSD NP HH +F+ IE K
Sbjct: 60 LRLNHLQVKGTHNSYHRRPRF-ALVREHDYEQAPLDVQLGEYGVRAVELDIH---PSSRGYEVYHLPVIDSRSTCALLIDCLGVLKRWSDSNPGHHPLFVWIEPK 160
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: A0A2E4FD70_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E4FD70_9DELT) HSP 1 Score: 90.5 bits (223), Expect = 4.740e-17 Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 1
Query: 478 TLRINQLQVYGTHNSYHRRTNIPALGKFWKYEFPSIPAQLDA-GVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSDLNPLHH--VIFM----DIEMKLTGDF 804
+LR+N +Q GTHNSYH++ P L KY PS+ QL+ GVR E D+H G+ ++HI ++D +SSC L CL+E RAWSD NP H VI+M D++ + GD+
Sbjct: 128 SLRLNHMQALGTHNSYHQQPQAP-LHPSHKYTMPSLTDQLELHGVRQFEWDLHLHLD-GQLEIFHIPLIDQVSSCTLFLDCLEETRAWSDANPGHAPLVIWMELKDDVDTGVLGDY 241
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: A0A4U1JD73_9DELT (Uncharacterized protein n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1JD73_9DELT) HSP 1 Score: 87.8 bits (216), Expect = 2.320e-16 Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 481 LRINQLQVYGTHNSYHRRTNIPALGKFWKYEFPSIPAQLDA-GVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSDLNPLHHVIFMDIEMK 789
LR++ LQ THNSYH T +G+ W+Y + QL A GVRH+ELD+ Y++ + VYH+ V+D ++C L CL+ ++ WSD + HH I + E+K
Sbjct: 46 LRLHHLQTKSTHNSYHIETEGNTVGE-WRYTHAPLDVQLGAQGVRHVELDLRYNFDLEAFEVYHLPVLDEQTTCRKLTDCLRVLKDWSDAHRAHHPIVVQFEIK 148
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Match: A0A6N7PQK5_9DELT (Uncharacterized protein n=1 Tax=Polyangium spumosum TaxID=889282 RepID=A0A6N7PQK5_9DELT) HSP 1 Score: 87.8 bits (216), Expect = 2.340e-16 Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 481 LRINQLQVYGTHNSYHRRTNIPALGKFWKYEFPSIPAQLDA-GVRHLELDVHYDWKTGRWFVYHISVVDALSSCHCLLSCLQEIRAWSDLNPLHHVIFMDIEMK 789
LR++ LQ THNSYH T +G W+Y + QL A GVRH+ELD+ YD+ + VYH+ V+D ++C CL ++ WSD + HH I + +E+K
Sbjct: 47 LRLHHLQTKSTHNSYHVETEGNTVGD-WRYTHAPLDVQLGAQGVRHVELDLRYDFALEAFEVYHLPVLDEQTTCRKFTDCLVVLKKWSDAHRAHHPIVVQVEIK 149 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11972.1536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11972.1536.1 >prot_E-fasciculatus_F_contig11972.1536.1 ID=prot_E-fasciculatus_F_contig11972.1536.1|Name=mRNA_E-fasciculatus_F_contig11972.1536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=271bp MAPQLPISRDWGVDNEAIPLPVVISPEQPSSAELEAGTEGFSPDRLLRQAback to top mRNA from alignment at E-fasciculatus_F_contig11972:51..2170- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11972.1536.1 ID=mRNA_E-fasciculatus_F_contig11972.1536.1|Name=mRNA_E-fasciculatus_F_contig11972.1536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11972:51..2170- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11972:51..2170- >mRNA_E-fasciculatus_F_contig11972.1536.1 ID=mRNA_E-fasciculatus_F_contig11972.1536.1|Name=mRNA_E-fasciculatus_F_contig11972.1536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11972:51..2170- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |