mRNA_E-fasciculatus_F_contig11967.1534.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11967.1534.1
Unique NamemRNA_E-fasciculatus_F_contig11967.1534.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: A0A6H5JKU1_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE)

HSP 1 Score: 463 bits (1192), Expect = 8.690e-155
Identity = 233/247 (94.33%), Postives = 244/247 (98.79%), Query Frame = 1
Query:    1 LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
            LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLG+LYVFYVVPVTLLYLLLSEDSVTSYADWVA+LYD++ IFAA VQLLQP+ALLVLMNTLPPLIRLLGMAEGFPAESRNQQA LSRYFYFQI+NVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISL+QEYLLR+IWPRKTPRDRATVV+G+RPYFDAGWFNYPKYIAQDLLVVV+
Sbjct:  545 LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGVLYVFYVVPVTLLYLLLSEDSVTSYADWVAELYDNNTIFAALVQLLQPVALLVLMNTLPPLIRLLGMAEGFPAESRNQQAVLSRYFYFQIVNVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLMQEYLLRIIWPRKTPRDRATVVMGIRPYFDAGWFNYPKYIAQDLLVVVI 791          
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: A0A835Z3W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W6_9STRA)

HSP 1 Score: 271 bits (692), Expect = 2.280e-82
Identity = 138/246 (56.10%), Postives = 178/246 (72.36%), Query Frame = 1
Query:    4 HGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
            H    GR+ A E+PE RD+YW N  + +  R RRR+LV+ FL +LYVF+VVPVT LYL+ S +++++++  + D           +  +QP+ LL LMN LPPLIR LG+AEG  AES NQ+  LSRYFYFQ+INVFLVTT+A ++ DT+S IV+ P+K  TLLGE+LPK+ GFFCEY+++KM +GLWIEL+R  SLLQ   L  +WP  T RDR  VV G+R Y D GWFNYPKY+AQDLLVVVV
Sbjct:  387 HTNKVGRLRAYEAPEPRDVYWQNAHIRRATRLRRRVLVDAFLAVLYVFWVVPVTGLYLVFSTEALSAHSALLRDSCARDGWLCTALDSVQPVMLLALMNALPPLIRALGVAEGSAAESWNQKVALSRYFYFQVINVFLVTTIAGTVFDTLSLIVDSPSKALTLLGESLPKMCGFFCEYVLIKMLSGLWIELSRLFSLLQHCALVCVWPMATRRDRRAVVAGMRRYDDPGWFNYPKYLAQDLLVVVV 632          
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: F0Y5Y8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Y8_AURAN)

HSP 1 Score: 214 bits (546), Expect = 3.400e-60
Identity = 111/247 (44.94%), Postives = 166/247 (67.21%), Query Frame = 1
Query:    1 LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
             H A PG M A  +PE RD++W N  ++  QR  RR++ +  + LL +FY++PVTL+ L+ SE ++ ++   + +L  DS+ F A V+++QP+AL+ LM  LPP    LG  EG  + S N    LSRY+ FQI NV LVTT+A S++  + +I+++P  T +LLGE+LP+V  FF  YI +K+F+GL IEL R+++ +Q+ L R ++P  TPRD+   VLG+R + + GWF+Y KY AQDLLVVV+
Sbjct:  764 FHAATPGGMVASMAPEPRDVFWKNAELSGKQRTTRRVVADCLVVLLLIFYIIPVTLISLVFSEQALKAHWPALKELASDSLAFDACVKMVQPMALIALMLLLPPAFLGLGFWEGTLSWSENTLTQLSRYYSFQITNVLLVTTIAGSLVKCLQKIIDDPQATLSLLGESLPQVCAFFSCYIFIKVFSGLCIELCRAVAAVQQALKRCLYPSSTPRDQRAEVLGLRDFENPGWFSYGKYGAQDLLVVVL 1010          
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: A0A7S3ZXG7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXG7_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.140e-55
Identity = 111/247 (44.94%), Postives = 157/247 (63.56%), Query Frame = 1
Query:    1 LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
             H  APG + A  +PE RD+ W N     N R  R  + +  + LL VFYVVPVTL+ + LSE ++      + +L   S I  AFV+ +QP+AL+ +M  LPPL   LG+ +G  + + N    +SRY+ FQIINV LVTT++ S++++I EI++EP  TF+LLG +LP+V  FFC Y+ +K FAGL +EL R ++  Q+ L R+I+P  T +DR    LG+R     GWF++ KY AQDLLVVVV
Sbjct:  416 FHAEAPGGLVATPAPEPRDVIWRNIGFDTNTRATRGAIADCLVVLLLVFYVVPVTLVAMALSETALCDRYSSINNLVKSSFIADAFVKTIQPMALVGIMLLLPPLFLGLGVWQGCHSWTENTLLQMSRYYSFQIINVLLVTTISGSVVNSIEEILQEPASTFSLLGGSLPRVCAFFCCYVFMKAFAGLPLELCRGVAAAQQTLKRLIYPSATQQDRKHAFLGLRDIAGPGWFSFGKYGAQDLLVVVV 662          
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: A0A7S3NIB5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIB5_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.250e-54
Identity = 112/247 (45.34%), Postives = 158/247 (63.97%), Query Frame = 1
Query:    1 LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
             H A PG M A  +PE RDI+W N R++Q  R  RR++  + + LL +FYVVPVTL+ L+LSE ++ +    +A   ++S++ A  +++LQP  L++LM  LPPL   LG  EG  + S N  A LSRY+ FQI NV LVTTVA S++  +  I+E P  T TLL ++LP+V  FF  YI +K   GL +EL R ++  Q  + R I+P  T RDRA V+LG+R   + G+F+Y K+ AQDLLVV +
Sbjct:  480 FHAATPGGMIAAIAPEPRDIFWPNLRLSQPTRATRRVIANILVVLLLIFYVVPVTLISLVLSEQAILARWPSMAKAANNSILIAIGLKMLQPAGLILLMLLLPPLFLGLGFWEGQLSWSSNTLAQLSRYYSFQITNVLLVTTVAGSLVKCLQRIIEHPKDTLTLLAQSLPQVCAFFSCYIFIKALGGLPLELCRGVAAGQHIVKRCIYPAYTARDRAAVILGLRDINNPGFFSYGKFAAQDLLVVAL 726          
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: A0A7S1B8V0_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8V0_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.940e-53
Identity = 101/247 (40.89%), Postives = 157/247 (63.56%), Query Frame = 1
Query:    1 LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
            +H + PG M  + +PE RDI W N  V++  +  RR L ++F+ +L  FY+VPV L+ ++LSE ++ +++  +  L   S  FA+ + ++QP++L+ +   LPPL   +  AEG  + S  Q    SRYF FQ+INVFLVT +A SI DT++ I+  P     LLG +LPK+A FF  Y+ +K F GL +EL R +SLLQ  +  ++ PR T R++ +V++G+R   D GWF + K +AQD+LV+V+
Sbjct:  655 MHSSKPGSMRVQTAPEPRDILWDNIYVSKGAKRTRRYLADIFVHVLIFFYIVPVALVSMVLSEQALVAFSPRLEQLDQASAFFASSIAMVQPLSLVAIQQILPPLFMQVYKAEGILSFSEVQMKVFSRYFLFQVINVFLVTAIAGSIFDTMAIIISRPEIALELLGASLPKMASFFITYVTMKTFLGLGVELVRIMSLLQGTVRSLLCPRATLREKRSVMVGMRAIDDPGWFPFHKILAQDMLVIVI 901          
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: A0A1E7ERH2_9STRA (DUF221-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ERH2_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.930e-53
Identity = 100/247 (40.49%), Postives = 152/247 (61.54%), Query Frame = 1
Query:    1 LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
            +H + PG M    +PE RD+ W N  V++     R IL E  + L+  FY++PV L+ LL+SE ++ S +  +A L   + +F++ + L+QP+ ++++   LPPL   +G  EG    S  Q    SRYF FQ++NVFLVTT+A SI DTI+ IVE+P +   +LG +LP+++ FF  ++ +K F GL +EL R++SLLQ  +   + P  T R    VV G+R   D GWF + K +AQD+LVVV+
Sbjct:  217 MHSSKPGAMQVSSAPEPRDVLWSNVYVSKGATRTRSILGEFLVILIISFYIIPVALVSLLVSEQALVSSSPRLAQLDQATALFSSVIALVQPLCIMLMQQILPPLFMAIGRLEGLVCFSDIQMRAFSRYFLFQVLNVFLVTTIAGSIFDTIATIVEKPEEALLMLGNSLPRMSSFFITFVTIKTFFGLGLELVRTMSLLQATIRVFVIPNATLRTARRVVCGLRAIDDPGWFPFHKILAQDMLVVVI 463          
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: A0A7S1ZBN9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBN9_TRICV)

HSP 1 Score: 191 bits (485), Expect = 3.360e-53
Identity = 102/247 (41.30%), Postives = 154/247 (62.35%), Query Frame = 1
Query:    1 LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
            +H + PG M    +PE RDI W N  +++  +  R+ + E  + L+  FY+VPV L+ LL+SE ++ S +  +A L   S  F+  + ++QPI L+ +   LPPL   +  AEG  + S  Q    SRYF FQ++NVFLVT++  SI DTI+ I+E P  TF +LG ALP+++ FF  ++I+K F GL +EL R +SL+Q  L  +++P  T R + +V LG+R   D GWF + K +AQD+LVVV+
Sbjct:  110 MHSSRPGSMQVTTAPEPRDILWNNVYLSKGAKRTRQYIGETLIHLIITFYIVPVALVSLLVSESALISSSPRLAQLDQASPFFSTGIAMVQPICLVSIQQLLPPLFIQITKAEGQLSFSEVQMRAFSRYFLFQVLNVFLVTSITGSIFDTIAIIIENPETTFEMLGNALPRMSSFFTTFVIMKSFLGLGLELVRLVSLVQNMLRYILFPNSTLRAQRSVRLGMRAIDDPGWFPFHKILAQDMLVVVI 356          
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: A0A7S2PQK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PQK9_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.440e-52
Identity = 92/242 (38.02%), Postives = 149/242 (61.57%), Query Frame = 1
Query:   16 PGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
            PG M    +PE RDI W N   ++  R  R +++++F   L  FY+VPV L+ LL+SE ++ S +  +  L   S +F+A +  +QP+ L++L   LPPL   +   EG  + S  Q    SRYF +Q++NVFLVT++A S+ DT++ I+  P   F +LG +LP+++ FF  ++ +K F GL +E++R +S+LQ  +L +++P  T R + +  + +R   D GWFN  K +AQD+LVVV+
Sbjct:    1 PGSMEVTTAPEPRDILWENVYFSKGARRARTLILQIFCLFLIAFYIVPVALVSLLVSESALVSISPRLNQLDKASSLFSAAIATVQPVCLVLLQQLLPPLFIRISRLEGTLSFSEAQMKAFSRYFMWQVLNVFLVTSIAGSVFDTLAIIIATPESAFEMLGNSLPRMSSFFVSFVTIKTFTGLGVEISRIVSILQNAILIILFPYSTLRAKRSTRMAMRAIDDPGWFNQHKILAQDMLVVVI 242          
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Match: A0A7S4K333_9STRA (Hypothetical protein (Fragment) n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K333_9STRA)

HSP 1 Score: 192 bits (488), Expect = 2.300e-52
Identity = 102/247 (41.30%), Postives = 154/247 (62.35%), Query Frame = 1
Query:    1 LHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLYLLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRLLGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEPTKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIWPRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV 741
            +H + PG M    +PE RDI W N  +++  +  R I+ E  + L+  FYVVPV L+ LL+SE ++ S +  +A L   S  F+  + ++QPI L+ +   LPPL   +  AEG  + S  Q    SRYF FQ++NVFLVT++A SI DT++ I+E P   F +LG ALP+++ FF  Y+++K F GL +EL R +SL+Q  L  +++P  T R + +V +G+R   D GWF + K +AQD+LVVV+
Sbjct:  655 MHSSKPGSMQVTTAPEPRDILWGNVYLSKGAKRTRSIIGEALILLIITFYVVPVALVSLLVSESALISSSPRLAQLDRASAFFSTGIAMVQPICLVGIQQLLPPLFMQITKAEGLLSFSEAQMKAFSRYFLFQVLNVFLVTSIAGSIFDTVAIIIENPETAFEMLGNALPRMSSFFITYVVMKTFLGLGLELVRIVSLVQAMLRFILFPNSTLRAQRSVRIGMRAIDDPGWFPFHKILAQDMLVVVI 901          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11967.1534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKU1_9PHAE8.690e-15594.33ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835Z3W6_9STRA2.280e-8256.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0Y5Y8_AURAN3.400e-6044.94Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3ZXG7_9STRA1.140e-5544.94Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3NIB5_9STRA1.250e-5445.34Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1B8V0_9STRA1.940e-5340.89Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A1E7ERH2_9STRA2.930e-5340.49DUF221-domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S1ZBN9_TRICV3.360e-5341.30Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2PQK9_9STRA1.440e-5238.02Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4K333_9STRA2.300e-5241.30Hypothetical protein (Fragment) n=3 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11967contigE-fasciculatus_F_contig11967:1..4070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.1
Seed ortholog evalue3.3e-124
Seed eggNOG ortholog2880.D8LQB2
KEGG koko:K21989
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons5
Model size741
Cds size717
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11967.1534.1prot_E-fasciculatus_F_contig11967.1534.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11967 25..4070 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927705.5320427-UTR-E-fasciculatus_F_contig11967:0..241622927705.5320427-UTR-E-fasciculatus_F_contig11967:0..24Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11967 1..24 +
1695995658.6020603-UTR-E-fasciculatus_F_contig11967:0..241695995658.6020603-UTR-E-fasciculatus_F_contig11967:0..24Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11967 1..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927705.5453968-CDS-E-fasciculatus_F_contig11967:24..2371622927705.5453968-CDS-E-fasciculatus_F_contig11967:24..237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 25..237 +
1695995658.6142523-CDS-E-fasciculatus_F_contig11967:24..2371695995658.6142523-CDS-E-fasciculatus_F_contig11967:24..237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 25..237 +
1622927705.5588706-CDS-E-fasciculatus_F_contig11967:1565..17271622927705.5588706-CDS-E-fasciculatus_F_contig11967:1565..1727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 1566..1727 +
1695995658.6224136-CDS-E-fasciculatus_F_contig11967:1565..17271695995658.6224136-CDS-E-fasciculatus_F_contig11967:1565..1727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 1566..1727 +
1622927705.5744066-CDS-E-fasciculatus_F_contig11967:2630..27441622927705.5744066-CDS-E-fasciculatus_F_contig11967:2630..2744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 2631..2744 +
1695995658.6333601-CDS-E-fasciculatus_F_contig11967:2630..27441695995658.6333601-CDS-E-fasciculatus_F_contig11967:2630..2744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 2631..2744 +
1622927705.5870225-CDS-E-fasciculatus_F_contig11967:3117..32041622927705.5870225-CDS-E-fasciculatus_F_contig11967:3117..3204Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 3118..3204 +
1695995658.645404-CDS-E-fasciculatus_F_contig11967:3117..32041695995658.645404-CDS-E-fasciculatus_F_contig11967:3117..3204Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 3118..3204 +
1622927705.6008084-CDS-E-fasciculatus_F_contig11967:3929..40701622927705.6008084-CDS-E-fasciculatus_F_contig11967:3929..4070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 3930..4070 +
1695995658.6661522-CDS-E-fasciculatus_F_contig11967:3929..40701695995658.6661522-CDS-E-fasciculatus_F_contig11967:3929..4070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11967 3930..4070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11967.1534.1

>prot_E-fasciculatus_F_contig11967.1534.1 ID=prot_E-fasciculatus_F_contig11967.1534.1|Name=mRNA_E-fasciculatus_F_contig11967.1534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=239bp
MAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGLLYVFYVVPVTLLY
LLLSEDSVTSYADWVADLYDDSMIFAAFVQLLQPIALLVLMNTLPPLIRL
LGMAEGFPAESRNQQATLSRYFYFQIINVFLVTTVANSILDTISEIVEEP
TKTFTLLGEALPKVAGFFCEYIILKMFAGLWIELTRSISLLQEYLLRVIW
PRKTPRDRATVVLGVRPYFDAGWFNYPKYIAQDLLVVVV
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mRNA from alignment at E-fasciculatus_F_contig11967:1..4070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11967.1534.1 ID=mRNA_E-fasciculatus_F_contig11967.1534.1|Name=mRNA_E-fasciculatus_F_contig11967.1534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4070bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11967:1..4070+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCACGGCGCAGCTCCCGGTCGCATGGCGGCGGAGGAGTCTCCCGAGGC TCGAGACATCTACTGGTTCAACACTCGCGTCACGCAGAACCAGCGGAATC GGCGGCGGATCCTGGTGGAGGTCTTCTTGGGGCTGCTGTACGTCTTCTAC GTGGTGCCGGTGACCCTGCTGTACCTCTTGCTGTCGGAGGACTCGGTCAC GTCGTACGCTGATTGGGTGGCGGATTTGTACGACGATGTGAGTGTTTTAC GCTGATTGGGTGGCAGAAGTTGTAGGAACGAAGTGAGGTTTTTACGCTGA TTGGACGGCAGAGTTGAACGATATCGTGAGGACGCTCACTGGTGGGGTAG CAGAAGTTGTAGGGGTTATTTTGAGTACAATAGTCTAGTCATTGTGGTCG CGTTGCTGTTTGGCGGTGGTGGTGGTGGTGTTATTGGTTACCATTGCTAC TGTAGTACAGCTTGATGTGTCTGGGTGCGCGGTGGTGTTGCTGTCGTCAT TCGGTTGTGGCGGCTTGAATTTGTGTGCTTGTGTTTTTTGGTGGTGGTGG GATGAGCAGTGCTTCTGCTGCTGCTATACTGGCAGGTTGGGCCAGAGATT GAGCGGCGGTGGTGTCGTGTGCTGGTTGCGCAGTTGCGTGGCCTTCGCGA CGGCCTCTTCCCCGCGCTCCTGCCGCTGTTGGTGGACCGCCCCCCCCGCA CGTTCTGCGCGGCGGCGGTGGCCGCCTCCTCCTCTTCGGCGGTGATAGCG GCAGCAGGGGCACTGTCCCCTTCAATATTCGTTACCTCACCGCGTTCTTC TTGTCCTGATTCACAGAACCCGGCTTGTACGGCCTCAACGGAGCCTTACA CCACCGCGGCGAGAGCATCGGCCGAGGACACTTCACTGCCTGTGTGCGCA TGGAGGAGAATAAATGGCGAGGATACGATGACGCTAAGTATACGAATGTG GCTCAGGGCGATGCGTTCCCAACGCATCGCCCTGAGCCACATTCCCGTAT TTGGCGTCGTCGTAACGTCACCATTTTTTCTCCTGCATGCGCACACAGGC AGTGAAGTGTCCTCGGCCGATAGTCAAGCCCCGGTGGTGTTAGACTCCGT TGAGGCCGTACAAGCCGGGTTCTGTGAATCAGGGCAATAACGAATGTTGA AGGGGACAGTGCCCCTGCTGCCGCTGTCACCGCCAAAGAGGAGGAGGCGG CCACCGCCGCCGCGCAGAACGTGCGGGGGGCCGGTCCGCCAACAGCGGCA GGAGCGTGCCGACGAGGCTATCGCGATGGCCACGAAACGGCGCAACCAAC ACACAACACCACCGCCGCCTGCTGGTGCATCTATAGTTTTCACTGCTCTG TAGTGCCTCTGTTGTGTAACGGCTTAACCTTAAAGCTGATGATGATGAGA GACCAACGTTCTCGTTTCGCATCTGTCACGACGATTGCTGTTGCCGATGC CAATCTTGCAACGACCTTGACGATTCCCCCACTGTGGTTGCGGCTGCTGC TCCCCGCCTCTCTCCTCCTCCTCCGTCCGTGATATTGGTGGCGCTCCCGT TTGCGAAAATGGCAGAGCATGATCTTCGCCGCGTTTGTGCAGCTCCTGCA ACCCATCGCTCTGCTGGTGCTCATGAACACGCTGCCCCCTCTGATCCGGC TGCTGGGGATGGCGGAGGGATTCCCGGCAGAGTCAAGAAACCAGCAGGCA ACGCTGAGCCGCTACTTTTATTTCCAGGTCGGTCTCTCTTCTATTTTGTT TTACACAGCACAACGAATCCATCTCTATGAGAGTCTATAGGATTGGCAAT GAATTCTTAGCGTTTGCGGAGGAGCATCAATGTTCTTCGAAGTACAAATT GATTTTTTTCTTGTGTGGTGGAATGTTGTTGGTTCAGGAGACCCCAAGTC CGGCGTGTGTTAGAATGTTCTTTGTTTTCCTTGCTGGAGCGGTGGCGATG TGATGAGGTTGAGTGGTGATGGCGGTGGAATTGACGGGAGGGGGTTGTTG GCGTGATGTACGTGCCTGGTTCACATGTCGGAATACCGTCTCTCTATGTA ACCTTTCTTTCGTTTGATGTATGCATGGTCTGCTGCTCTCGGTTGTATCT CTCCCTTTTAGTCGCACACATCGTGTTGTTGGCGGCTGGCATGTCAAGTC TGGCATGTCAAAGTCGCGTGTGATTGCTTTGTGTTTTGTCATAGCACCGA CCCAGCGCGCGTAACGGCTGGAAAATATGCATACGTTAGTCTCGGTCGAG CTACAAGCAGTATGCATGTTGTCGAACAGCTTCCTGTGTGCTATTTAGCG TTCTTCTGTCGCCAGAGCATGTCACCGCCGTATCGTATCGAGTCCCCGGG AATCACGTGTTGATTGCGACGACGACGACGACGACGACTGCGGTGTTACC GTTCGCGGCAGGGTTGCGATCACCGTGACGTCATCACCGGCATCATGACG TCATCATTAACATGGTATCCATCACCGTCACCTTCGTGCCATCACCACCA CCATCATCATCGTCATCGAATAGTAGTCGTGACGTCATCAATCAACATTG TTGTGCCGTGTCATTTCACAGCATCGTGATGGCGTCACGCCCGCGTTTTT CTTTCCTTGCCCCCCGCCCCGCTTGTACAGATCATCAACGTCTTCCTGGT GACGACTGTGGCGAACTCTATCCTAGACACCATCAGCGAGATCGTCGAGG AGCCCACTAAGACCTTTACCCTCCTGGGGGAGGCCCTGCCCAAGGTGACT TGTTGTCCAACGGAGTTGTAGTGCAAAGCGTTTGGTGTCAAGAGGGGCAG GGTTCGGGCGAGGGATGTGGCGCATGAAGTGGTGATGGGAACCAGTTTTG TGTCTCGACATTCGGAACACTTTCGTGGATGGTTGACCACTTCGCCAGGG CCATCACTCGAGGGAAGACCTGTACTCCTCATGTTGTTCTGCTGGTAACA GTATCTAGTAAGCATGGCGTTTGTTGGGTTGTTTGGTTGTTTTTCTTTCC GCTCGCGGTGGTGGTGAGGCTATTAATTGTGCTGATGCTGCTTGCCGCCT CTCGCTGATGCCTGGCCGCTGCTTCGGCCCCCTCCCGATCACCACCGTCT TGTTTGGTGCTGAAAAGGTGGCAGGGTTCTTCTGCGAGTACATTATCCTC AAGATGTTCGCGGGGCTGTGGATCGAGCTGACTCGCAGCATCTCCCTCCT GCAGGTGAGCCATGTATTAAATAGCTCCTCCTTCGTTTCATCTTGCCTTC GTCGGAGGAGACTGTTCCTTTTTCGTGGCTTCTCTGTCTTAAGTTGCTTA AAGTTGGCATTCGTCTTGTTCATCTTGCCTTCGTGATACCTCTCTACCTC TGTTAGGCTTGCGTTGGGAGGCCCTTTCGTGGGTTCTCTATCTCCAGTTG GCATTTCTTCGTTTCATCCTGCCTTCGTCAAGAATGTGTGCCTCTCTCTC CCTCTCACTGTTAGGGTTAGGGTTAGGGTTAGCATTGACCGCGCGAACTC TAGCTGAAGATCAAGGTGGTGCCACACATGGTATTGGTGATTGCTCGTGC TCTCTGTGTTGCATTTCCACTGAAGGCATGAGGTATAGGGAGCCAGCCTT CCATTCCATGTCGCTTTTTCCCCCCCCCCCCCTCTCTGGTCTTTCGAGCT AGCGTACAACACCTTTTTTGTTGTTAACATTTTTTTTTAGTTGTCTGAGC AGATTCAGGGTTTGGATGTTGCTGGTTGTGCACTACCGAGTTGTTGAATT CTTCTTCAGCCGACGCTCTGTGTCATTTCTGTTGTTGTTGTTGCTGCTGT TGTTGCTTTGTAACCCCTCCCCTTGCGGCTGTCACGTTTCTCAAGCCATG TCTCCAATCCTACAACTTTACCGTACTTTGTGTGACCCGTGTCTGTTGCG ATTATTTCCTGTTGTTATCGTTTTCGAAGGAGTACCTCTTGCGAGTCATC TGGCCGCGCAAGACGCCTCGAGATCGCGCAACTGTGGTGCTCGGCGTCCG GCCCTACTTCGATGCGGGGTGGTTCAACTACCCCAAGTACATCGCTCAGG ACCTGCTGGTTGTGGTGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11967:1..4070+

>mRNA_E-fasciculatus_F_contig11967.1534.1 ID=mRNA_E-fasciculatus_F_contig11967.1534.1|Name=mRNA_E-fasciculatus_F_contig11967.1534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1434bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11967:1..4070+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCGGAGGAGTCTCCCGAGGCTCGAGACATCTACTGGTTCAACAC
TCGCGTCACGCAGAACCAGCGGAATCGGCGGCGGATCCTGGTGGAGGTCT
TCTTGGGGCTGCTGTACGTCTTCTACGTGGTGCCGGTGACCCTGCTGTAC
CTCTTGCTGTCGGAGGACTCGGTCACGTCGTACGCTGATTGGGTGGCGGA
TTTGTACGACGATATGGCGGCGGAGGAGTCTCCCGAGGCTCGAGACATCT
ACTGGTTCAACACTCGCGTCACGCAGAACCAGCGGAATCGGCGGCGGATC
CTGGTGGAGGTCTTCTTGGGGCTGCTGTACGTCTTCTACGTGGTGCCGGT
GACCCTGCTGTACCTCTTGCTGTCGGAGGACTCGGTCACGTCGTACGCTG
ATTGGGTGGCGGATTTGTACGACGATAGCATGATCTTCGCCGCGTTTGTG
CAGCTCCTGCAACCCATCGCTCTGCTGGTGCTCATGAACACGCTGCCCCC
TCTGATCCGGCTGCTGGGGATGGCGGAGGGATTCCCGGCAGAGTCAAGAA
ACCAGCAGGCAACGCTGAGCCGCTACTTTTATTTCCAGAGCATGATCTTC
GCCGCGTTTGTGCAGCTCCTGCAACCCATCGCTCTGCTGGTGCTCATGAA
CACGCTGCCCCCTCTGATCCGGCTGCTGGGGATGGCGGAGGGATTCCCGG
CAGAGTCAAGAAACCAGCAGGCAACGCTGAGCCGCTACTTTTATTTCCAG
ATCATCAACGTCTTCCTGGTGACGACTGTGGCGAACTCTATCCTAGACAC
CATCAGCGAGATCGTCGAGGAGCCCACTAAGACCTTTACCCTCCTGGGGG
AGGCCCTGCCCAAGATCATCAACGTCTTCCTGGTGACGACTGTGGCGAAC
TCTATCCTAGACACCATCAGCGAGATCGTCGAGGAGCCCACTAAGACCTT
TACCCTCCTGGGGGAGGCCCTGCCCAAGGTGGCAGGGTTCTTCTGCGAGT
ACATTATCCTCAAGATGTTCGCGGGGCTGTGGATCGAGCTGACTCGCAGC
ATCTCCCTCCTGCAGGTGGCAGGGTTCTTCTGCGAGTACATTATCCTCAA
GATGTTCGCGGGGCTGTGGATCGAGCTGACTCGCAGCATCTCCCTCCTGC
AGGAGTACCTCTTGCGAGTCATCTGGCCGCGCAAGACGCCTCGAGATCGC
GCAACTGTGGTGCTCGGCGTCCGGCCCTACTTCGATGCGGGGTGGTTCAA
CTACCCCAAGTACATCGCTCAGGACCTGCTGGTTGTGGTGGTGGAGTACC
TCTTGCGAGTCATCTGGCCGCGCAAGACGCCTCGAGATCGCGCAACTGTG
GTGCTCGGCGTCCGGCCCTACTTCGATGCGGGGTGGTTCAACTACCCCAA
GTACATCGCTCAGGACCTGCTGGTTGTGGTGGTG
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