|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig11964.1533.1 vs. uniprot
Match: D8LIM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM1_ECTSI) HSP 1 Score: 515 bits (1326), Expect = 8.380e-182 Identity = 276/328 (84.15%), Postives = 281/328 (85.67%), Query Frame = 1
Query: 142 MESDLDFIRELTRYRSGAERAAKNDEYEFALVLNPNDEYRDAVEVLELALDLGDGGGGVTTSPQKLDKAKRVRESLGGLQEQHQPQQHSSPDRSGASDSPAGLSTSQSGPGSGRKGGAGPPLVRPGLSEGLEGVGGGRRTRLSLLDDLQEEEGRLTSRRKKELERKKKHRLFHFVDTMKQGVIVRRHLAHRTCDQIVLQSTDDCRTISWKPLLAADGGASGGGG-AMSGLFQSLRRGAAGSRLSK-NRAECVKTAHIAVVLPATDPDPSQPGFFGTRALRLSEDIPNPSRTFSLLYGDWGRGHCGMEDQVQGTLDLECPDDGMYAMLF 1119
MESDLDFIRELTRYRSGAERAA+NDEYEFALVLNPNDEYRDAVEVLELALDLGDGGGGVTTSPQKLDK KR SGPGSGRKGG GPP+VRPGLSEGLEGVGGGRRTRLSLLDDLQEEEGRLTSRRKKELERKKKHRLFHFV M++GVIVRRHLAHRTCDQIVLQSTDDCRTISWKPLLAADGGA A+SGLFQSLRRGAAGSRLSK NRAECVKTAHIAVVLPATDPDPSQPGFFGTRALRLSEDIPNPSRTFSLLYGDWGRGHCGMEDQVQGTLDLECPDDGMYAMLF
Sbjct: 1 MESDLDFIRELTRYRSGAERAARNDEYEFALVLNPNDEYRDAVEVLELALDLGDGGGGVTTSPQKLDKVKR------------------------------------SGPGSGRKGGGGPPVVRPGLSEGLEGVGGGRRTRLSLLDDLQEEEGRLTSRRKKELERKKKHRLFHFVHKMQEGVIVRRHLAHRTCDQIVLQSTDDCRTISWKPLLAADGGAXXXXXXAISGLFQSLRRGAAGSRLSKKNRAECVKTAHIAVVLPATDPDPSQPGFFGTRALRLSEDIPNPSRTFSLLYGDWGRGHCGMEDQVQGTLDLECPDDGMYAMLF 292
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1119 |
| Cds size | 1119 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11964.1533.1 >prot_E-fasciculatus_F_contig11964.1533.1 ID=prot_E-fasciculatus_F_contig11964.1533.1|Name=mRNA_E-fasciculatus_F_contig11964.1533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=373bp
QQQQQQQQQQQQQQQQQRFSSQRGSSFKVKSGGGGSPVVVGGGHEDAMES
DLDFIRELTRYRSGAERAAKNDEYEFALVLNPNDEYRDAVEVLELALDLG
DGGGGVTTSPQKLDKAKRVRESLGGLQEQHQPQQHSSPDRSGASDSPAGL
STSQSGPGSGRKGGAGPPLVRPGLSEGLEGVGGGRRTRLSLLDDLQEEEG
RLTSRRKKELERKKKHRLFHFVDTMKQGVIVRRHLAHRTCDQIVLQSTDD
CRTISWKPLLAADGGASGGGGAMSGLFQSLRRGAAGSRLSKNRAECVKTA
HIAVVLPATDPDPSQPGFFGTRALRLSEDIPNPSRTFSLLYGDWGRGHCG
MEDQVQGTLDLECPDDGMYAMLF back to topmRNA from alignment at E-fasciculatus_F_contig11964:3..4201+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig11964.1533.1 ID=mRNA_E-fasciculatus_F_contig11964.1533.1|Name=mRNA_E-fasciculatus_F_contig11964.1533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4199bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11964:3..4201+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACA
GAGGTTTTCTTCGCAAAGGGGGAGTAGCTTCAAGGTCAAGTCGGGCGGTG
GCGGTAGCCCGGTGGTAGTGGGCGGTGGGCACGAGGATGCCATGGAGTCG
GACCTGGACTTCATCCGGGAGCTGACGCGCTACAGGAGCGGGGCCGAGCG
AGCCGCTAAGAACGACGAGTGAGCTTGTCTGCCTTCTCTTGGTTGTGTGT
TGAAAAACGAACGAAGAGCCTCCCCGCTTTGTGCTAAGGATAACAACTTT
CATTTCGATGAAAAAGAAATTGCCCGTCATTGTTTGTTGCCATTTTTGTC
GATAGAAGCGTGCCTATATATTAACGGTACGCACTACTGTACATATCTGG
ATGGCGAGCGTTGGTTGTCCTACTTTCCTGAGAACATTGCTCCATGTTTA
TATACAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTTCGT
CTTCGTCGGTATCACATGGCAGGTACGAGTTCGCGCTGGTCTTGAACCCG
AACGATGAGTACCGGGACGCGGTGGAGGTGCTCGAGCTTGCCCTCGACCT
CGGGGATGGGGGGGGAGGGGTGACGACTAGCCCGCAGAAGCTGGACAAGG
CGAAGCGGGTGAGGGAGAGCCTCGGGGGGCTTCAGGAGCAGCACCAGCCG
CAGCAACACTCTTCTCCCGACCGCTGTGAGTCTTCTGTTGTTGTTGTTGT
GGTGGTGGTGGTGGTTGTAGTTGTAGCTGTTGTTGTTGTTGTCTTCACAC
TAAGAAACCGTTCCAGTATCTGCTGAAAATGTAGGAGAGTACAATGCCAC
CTTCCTTGCCTACGGTAATTGCTTATCCTACTCCACCAAAACCTGGAAGG
CGCGGTTAGGTAGAATCCGTTATGGTCCAACTCGTGCGGATGCCTTCCGT
GGTCACAGGCCAACTACCTATAAACGGTTATAATTGGGAGTGTTTTGCGA
GGGTTGTGATTGGTCAAGGTGGAGGCACGACGGATGTGCAGGGTGCGGTA
TATGATTTTTTTTGTAGTTGTGACCCACCTCAATGGTAGGGTACAGATGG
AGTTGTTCGAATGTCTGGAGCGTTGACGTGGAGGGCGATCAGCACTGCTC
TCGGCAAACGTTTTGCGTGCAAGAAAATAGCGATACAGCAGAGAAGATGC
ATATGTGTAATAGACTGAATTAACTCCACATGTGCAATGGCTGAATCGCC
CTCTCTGCCTCTCTCTATAGGAGGCTGCTGCAGACAGATCTCCTCCTCCT
CCTTATGTCTACCGCTGATGTCATTGCTGACGGGCTCCACACACGATGCC
TATACCATACCTCCCTCCCAGCCCTCGGCACCAAGTCCTGCTCTCTTAAA
GCGTGTGCACCTTTTTCCCGCAAACACCCTCCAGCCCCCATTACACCCGC
CGAACAACCCTCTCCACCAACACGCTCGAAAGCTTAACCTCACCAACGCC
GGTTATATGGGGTCCCAAAAACTGAAAATTTATACCGAAGTCACCTAAAT
ACAGACCAAAACACAAACACATTGCGCCTTTTAAATGCATCCCTACATAC
TGCATTGATTTTGATGTTTCGGTTTGTGTTTTCTCTCGTTCCCTACCCCC
ACATTGCGTTGCGTGGTTTACAAGCCGGCGCGTCTGACAGTCCCGCAGGA
CTGTCCACTTCACAGAGCGGTCCCGGGAGCGGCCGCAAGGGGGGGGCGGG
TCCCCCGCTGGTAAGGCCAGGTCTCTCCGAGGGTCTTGAAGGGGTGGGTG
GGGGGCGACGGACGCGTCTGAGCTTGCTGGACGACCTACAAGAGGAGGAG
GTGCTGAAAATGCGTTTTTTGGCGTGGTTTGTGTGTCTGCTGCGTGTTAT
CGTTGTTGGTGGATTTGGTAGTTGCAGGGGTTGCGGTTGGGGTTGAAGTT
GATAGCTGCAATAAATAGTTCAATGGAGATTGTTACCCGCGACGTTGTTT
TGTTTTGTGTGTATTTTCTGCAATGACAAGGGCTGGGTGCTTTACTTTCT
GTTTTAGCAGTTTCCCTTTGAACGTATAAAACTCTCACAATGTTATCAGG
CGATGCATAAGTTCTCCGAAGCGTCGCGAAACACACCTTCGGACGTTTGG
GCTTCTTGGCCTCCAAAATTGTGTTTCCGTATTTGTTGCGTTGTGATGCG
TGATTCTCTTCTCATTGGTTGCTCTGGACTTGATAGTTTCTTGACCACAC
GTGCTTTTCAATCCGTTTTGTCGCCATGAAAAGGTCGTCCATCTGTACCG
CTGCCCCAGCACCTGAAATAATGTTTTTTTGAGCAAGCCCCCCGGTTCCC
TATTTGATCAGTGGGGATACATACCAAGAGCGACTTTGAAGAGGTGTCTG
CGTGGGTGGGCAATGTTGAAGTGTTAACATGTCATGAGAGAATCAGACCC
TCAGTTTCTTAAATACAGCGTAGAACCGATTTCGAAAGCGGTGGTGACGC
ACTCTGGAGAAAGTGTGAAAGTGTATGACGCACCACTAGGTTTTGGGTGT
TGTCCGCCTACTACACAGGGTGGTAGGTTGGCGTCATACTTCATACTTAG
AGGTATTTTCTCTCTCTTTGTTATACCGCTCTCGTACACACCATTATCTT
TTTCTCACACATAACAACGGTATTGTGTTCTGTCTCTCTCTCTCTTTTTT
TTGTCCGGCGTGCCAAAAGGGGCGCTTGACGAGCCGTAGGAAGAAGGAGC
TAGAGCGGAAGAAGAAGCACCGCCTGTTCCACTTCGTTGACACAATGAAG
CAGGGGGTCATCGTCCGGAGGCACCTCGCTCACCGCACCTGCGATCAGAT
CGTCCTACAGAGCACCGTGAGTGTTCGTGTTTTTCCTTAGAGGGTTCGGG
GGGGGGTGGTGGGCGTACTCTAATGTTTTGCATGCCTTAGTGGTTAGAAC
ATTGACCACGCGGCCTCGAGAGGACAGAGCATAGGGGGGCAGAGTATGTG
ATCTTGTAGTGCTGAGATATATGCCGGGCAGACCACCTGTCACGTAGAAT
ATCCCCTTGTAGTGTCGCTACAAAATTGGGATGTTTATACCGATGGTTGG
ATTCGTCAACATCGGTTCGGCCGCCGAGGTACTGTATGGCGCTGGGCAGG
GCAGCAGCGTTTTCTTTCACACTTGTAGACGAGGGAAGGTATAGAGTCCT
TCTCGCAATAATAAGGAAGAAAGACTCTGCCTAAGGAAGGTGGAGAAAAT
ATACGACAAAAAAATCCCTGTGTGGCGTTGCTCCTCTTGTCTGTGTGGCC
CAGGTTGACACGTCAAGTAAATAAATCGAAAGCCGTAAAAGTCTCACGTC
CGGAATAATTGGGACGACGCGTGTGCAAATGCATACAGTGGGGGTCTCTG
AATATGGCGGTCGGCCTATGTCTGCCTATGTATGGCGTGTGAAAGCAGCT
GGCACAGACGGAATTATGGAGTTGTTCTACGCACTGAATTAAGCGGCCGC
CCCGTATATGGCGGTCACTGTCAGCTGCCGTACCACCGCCTTATCAGGGG
ACTGTACCCCCACTGTATGTATATACACACACATGTCCCTTGTTCCCCGT
GCCATGAAGCGCTCGGCTCGAAGAGCGGTGTCAATGTTTTTAGCCTCCAA
CAGAACAAACACAAGCCTGACACTCCATTGTTTCTTTTACAACGAACATC
GTCTTGATGACACACCAGTTGCTCATGTTGTTCTTTTAAAGAAAAATACA
AAGTACGTTGTTCTTGTGCAACAAACATCGGTTTTCATGAAAATGAACCG
AAAACATAAAAACTACACCGCCAGGACGACTGCCGGACCATCTCCTGGAA
GCCCTTGCTGGCCGCGGACGGCGGAGCTAGCGGCGGTGGGGGGGCAATGA
GCGGCCTGTTCCAGAGCCTGAGGAGAGGCGCGGCCGGCAGCAGGCTAAGT
AAGAACCGCGCCGAGTGCGTCAAGACCGCGCACATCGCGGTCGTCCTGCC
GGCGACTGATCCAGACCCAAGCCAGCCCGGCTTCTTCGGCACCCGGGCGC
TGCGTCTCTCGGAGGACATCCCTAACCCGTCGAGGACGTTCAGCCTGCTG
TACGGGGACTGGGGAAGGGGGCACTGCGGGATGGAGGATCAGGTGCAGGG
TACCCTGGACTTGGAGTGCCCCGACGACGGCATGTACGCCATGCTCTTC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig11964:3..4201+ >mRNA_E-fasciculatus_F_contig11964.1533.1 ID=mRNA_E-fasciculatus_F_contig11964.1533.1|Name=mRNA_E-fasciculatus_F_contig11964.1533.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2238bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11964:3..4201+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACA
GAGGTTTTCTTCGCAAAGGGGGAGTAGCTTCAAGGTCAAGTCGGGCGGTG
GCGGTAGCCCGGTGGTAGTGGGCGGTGGGCACGAGGATGCCATGGAGTCG
GACCTGGACTTCATCCGGGAGCTGACGCGCTACAGGAGCGGGGCCGAGCG
AGCCGCTAAGAACGACGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAACAGCAACAGCAACAGAGGTTTTCTTCGCAAAGGGGGAGTAGCTTCA
AGGTCAAGTCGGGCGGTGGCGGTAGCCCGGTGGTAGTGGGCGGTGGGCAC
GAGGATGCCATGGAGTCGGACCTGGACTTCATCCGGGAGCTGACGCGCTA
CAGGAGCGGGGCCGAGCGAGCCGCTAAGAACGACGAGTACGAGTTCGCGC
TGGTCTTGAACCCGAACGATGAGTACCGGGACGCGGTGGAGGTGCTCGAG
CTTGCCCTCGACCTCGGGGATGGGGGGGGAGGGGTGACGACTAGCCCGCA
GAAGCTGGACAAGGCGAAGCGGGTGAGGGAGAGCCTCGGGGGGCTTCAGG
AGCAGCACCAGCCGCAGCAACACTCTTCTCCCGACCGCTGTACGAGTTCG
CGCTGGTCTTGAACCCGAACGATGAGTACCGGGACGCGGTGGAGGTGCTC
GAGCTTGCCCTCGACCTCGGGGATGGGGGGGGAGGGGTGACGACTAGCCC
GCAGAAGCTGGACAAGGCGAAGCGGGTGAGGGAGAGCCTCGGGGGGCTTC
AGGAGCAGCACCAGCCGCAGCAACACTCTTCTCCCGACCGCTCCGGCGCG
TCTGACAGTCCCGCAGGACTGTCCACTTCACAGAGCGGTCCCGGGAGCGG
CCGCAAGGGGGGGGCGGGTCCCCCGCTGGTAAGGCCAGGTCTCTCCGAGG
GTCTTGAAGGGGTGGGTGGGGGGCGACGGACGCGTCTGAGCTTGCTGGAC
GACCTACAAGAGGAGGAGCCGGCGCGTCTGACAGTCCCGCAGGACTGTCC
ACTTCACAGAGCGGTCCCGGGAGCGGCCGCAAGGGGGGGGCGGGTCCCCC
GCTGGTAAGGCCAGGTCTCTCCGAGGGTCTTGAAGGGGTGGGTGGGGGGC
GACGGACGCGTCTGAGCTTGCTGGACGACCTACAAGAGGAGGAGGGGCGC
TTGACGAGCCGTAGGAAGAAGGAGCTAGAGCGGAAGAAGAAGCACCGCCT
GTTCCACTTCGTTGACACAATGAAGCAGGGGGTCATCGTCCGGAGGCACC
TCGCTCACCGCACCTGCGATCAGATCGTCCTACAGAGCACCGGGCGCTTG
ACGAGCCGTAGGAAGAAGGAGCTAGAGCGGAAGAAGAAGCACCGCCTGTT
CCACTTCGTTGACACAATGAAGCAGGGGGTCATCGTCCGGAGGCACCTCG
CTCACCGCACCTGCGATCAGATCGTCCTACAGAGCACCGACGACTGCCGG
ACCATCTCCTGGAAGCCCTTGCTGGCCGCGGACGGCGGAGCTAGCGGCGG
TGGGGGGGCAATGAGCGGCCTGTTCCAGAGCCTGAGGAGAGGCGCGGCCG
GCAGCAGGCTAAGTAAGAACCGCGCCGAGTGCGTCAAGACCGCGCACATC
GCGGTCGTCCTGCCGGCGACTGATCCAGACCCAAGCCAGCCCGGCTTCTT
CGGCACCCGGGCGCTGCGTCTCTCGGAGGACATCCCTAACCCGTCGAGGA
CGTTCAGCCTGCTGTACGGGGACTGGGGAAGGGGGCACTGCGGGATGGAG
GATCAGGTGCAGGGTACCCTGGACTTGGAGTGCCCCGACGACGGCATGTA
CGCCATGCTCTTCGACGACTGCCGGACCATCTCCTGGAAGCCCTTGCTGG
CCGCGGACGGCGGAGCTAGCGGCGGTGGGGGGGCAATGAGCGGCCTGTTC
CAGAGCCTGAGGAGAGGCGCGGCCGGCAGCAGGCTAAGTAAGAACCGCGC
CGAGTGCGTCAAGACCGCGCACATCGCGGTCGTCCTGCCGGCGACTGATC
CAGACCCAAGCCAGCCCGGCTTCTTCGGCACCCGGGCGCTGCGTCTCTCG
GAGGACATCCCTAACCCGTCGAGGACGTTCAGCCTGCTGTACGGGGACTG
GGGAAGGGGGCACTGCGGGATGGAGGATCAGGTGCAGGGTACCCTGGACT
TGGAGTGCCCCGACGACGGCATGTACGCCATGCTCTTC back to top
|