mRNA_E-fasciculatus_F_contig11963.1532.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: D8LDF8_ECTSI (Elongation of fatty acids protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF8_ECTSI) HSP 1 Score: 264 bits (675), Expect = 3.490e-84 Identity = 149/178 (83.71%), Postives = 153/178 (85.96%), Query Frame = 1
Query: 1 QVVLLLYMISLLGLFALFFVKRSLLGPAEDPGMCGVIKSLEADSSGEIRGTAGKAEGVIAAPAAAAR-SWHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYGYQLTPVGAPMPGLFVSEEIATATSRGGSSIKPISSSSG------SFSVKGGKPGFTVSWAITAVGAPCGEGVVGGG 513
+VVLLLYMISLLGLFALFFVKRSLLGPAEDPGMCGVIKSLEADSSG I GTAGK EGV+AAPAAAA SWHGNVLLDEVGAAEIWLPPGFPAETLAGSTTY YQLTPVGAPMPGLFVSEEIATATSRG I + S SFSVKGGKP FTVSWA+TAVGAPCG G GGG
Sbjct: 264 KVVLLLYMISLLGLFALFFVKRSLLGPAEDPGMCGVIKSLEADSSGGIGGTAGKTEGVVAAPAAAAAGSWHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYSYQLTPVGAPMPGLFVSEEIATATSRGSKPISRLRGDSNDAGSCISFSVKGGKPRFTVSWAVTAVGAPCGGG--GGG 439
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: A0A7S2FL32_9STRA (Elongation of fatty acids protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FL32_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.220e-9 Identity = 56/157 (35.67%), Postives = 73/157 (46.50%), Query Frame = 1
Query: 1 QVVLLLYMISLLGLFALFFVKRSLLGPAEDPGMCGVIKSLEADSSGEIRGTAGKAEGVIAAPAAAARSWHGNVLLDEVGAAEIWLPPGFPAETLAGS-TTYGYQLTPVGAPMPGLFVSEEIATATSRGGSSIKPISSSSGSFSVKGGKPGFTVSWAI 468
+V+++LYM S+L LF FFVKR + K A+ G I A E + ++ G +L G A+I LP G T GS YQLT +GA MPGLFV E+ TA + + SFSV GGK G VSW +
Sbjct: 268 KVIMILYMCSMLFLFGKFFVKRY------------IQKDTSANMDGVITTKAFTPEYI---------TYQGTAILGAKGTAKIELPLGAKTMTSRGSRVNLAYQLTAIGASMPGLFVESEVDTAPDS-----NQAKNEAPSFSVSGGKEGAKVSWQV 398
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: UPI0019C14FC0 (Uncharacterized protein n=1 Tax=Kitasatospora griseola TaxID=2064 RepID=UPI0019C14FC0) HSP 1 Score: 56.6 bits (135), Expect = 2.060e-6 Identity = 38/91 (41.76%), Postives = 47/91 (51.65%), Query Frame = 1
Query: 205 WHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYGYQLTPVGAPMPGLFVSEEIATATSRGGSSIKPISSSSGSFSVKGGKPGFTVSWAITAV 477
+ G V LD+ GAA + LP F A + + YQLTP+GAP PGL+V+ EI S FSV GG PG VSW +T V
Sbjct: 121 YDGVVTLDDTGAATVTLPDWFDAL----NQHFRYQLTPIGAPAPGLYVNAEI----------------SGNCFSVAGGTPGGKVSWLVTGV 191
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: A0A1G9PB15_9ACTN (Uncharacterized protein n=1 Tax=Nonomuraea jiangxiensis TaxID=633440 RepID=A0A1G9PB15_9ACTN) HSP 1 Score: 57.4 bits (137), Expect = 2.150e-6 Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query: 205 WHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYGYQLTPVGAPMPGLFVSEEIATATSRGGSSIKPISSSSGSFSVKGGKPGFTVSWAITAV 477
+ G V+LD+ GAAEI LP F A + + YQLTP+GAP P L+V+ E+ S +F+V GG+PG V W +T V
Sbjct: 542 YDGEVVLDDRGAAEITLPDWFEAL----NERFRYQLTPIGAPAPNLYVASEL----------------SGNAFAVAGGEPGLKVCWQVTGV 612
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: UPI00198C65A5 (Uncharacterized protein n=2 Tax=Kitasatospora griseola TaxID=2064 RepID=UPI00198C65A5) HSP 1 Score: 57.0 bits (136), Expect = 2.780e-6 Identity = 39/91 (42.86%), Postives = 47/91 (51.65%), Query Frame = 1
Query: 205 WHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYGYQLTPVGAPMPGLFVSEEIATATSRGGSSIKPISSSSGSFSVKGGKPGFTVSWAITAV 477
+ G V LD+ GAA + LP F A + + YQLTP+GAP PGL V+ EI S SFSV GG PG VSW +T V
Sbjct: 412 YDGVVTLDDTGAATVTLPDWFDAL----NQHFRYQLTPIGAPAPGLHVNAEI----------------SGNSFSVAGGPPGGKVSWQVTGV 482
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: A0A7Y3U989_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y3U989_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 7.520e-6 Identity = 37/91 (40.66%), Postives = 47/91 (51.65%), Query Frame = 1
Query: 205 WHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYGYQLTPVGAPMPGLFVSEEIATATSRGGSSIKPISSSSGSFSVKGGKPGFTVSWAITAV 477
+ GNV+LD G A + LP F A + + YQLTPVGAP PGL+V++EIA F + GG PG VSW +T V
Sbjct: 686 YRGNVMLDADGQAWVSLPDYFEAV----NRDFHYQLTPVGAPGPGLYVADEIA----------------GNRFRIAGGTPGGKVSWTVTGV 756
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: A0A2M9L2B9_9ACTN (Uncharacterized protein n=2 Tax=Kitasatospora sp. CB02891 TaxID=2020329 RepID=A0A2M9L2B9_9ACTN) HSP 1 Score: 55.1 bits (131), Expect = 1.220e-5 Identity = 37/91 (40.66%), Postives = 45/91 (49.45%), Query Frame = 1
Query: 205 WHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYGYQLTPVGAPMPGLFVSEEIATATSRGGSSIKPISSSSGSFSVKGGKPGFTVSWAITAV 477
+ G LD+ GAA + LP F A + + YQLTP+GAP PGL V EI S SFSV GG PG VSW +T +
Sbjct: 335 YDGVATLDDTGAATVTLPDWFDAL----NQDFRYQLTPIGAPAPGLHVDAEI----------------SGNSFSVAGGTPGGKVSWQVTGI 405
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: A0A4D9CSJ6_9STRA (Elongation of fatty acids protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSJ6_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.300e-5 Identity = 58/179 (32.40%), Postives = 88/179 (49.16%), Query Frame = 1
Query: 1 QVVLLLYMISLLGLFALFFVKRSLLG-PAEDPGMCGVIKSLEADSSGEIRGTAGKAEGVIAAPAAAARSWHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYGYQLTPVGAPMPGLFVSEEIA----------------TATSRGGSSIKPISSSSG---SFSVKGGKPGFTVSWAITAV 477
++++++Y S+L LF+ FF KR +L PA D MCGV+K+ A++ + S+ G+V L G+A + LP F E L+ S Y Y LTPVG+PMP L+VS E+ +S G ++ + +G SF V+GG+P VSW + V
Sbjct: 74 KILMMVYTGSMLVLFSDFFFKRYILRQPAYD--MCGVMKNDPAEAG------------------LSTLSYVGSVRLGPDGSAVVCLPRHF-REGLS-SPLYVYHLTPVGSPMPNLYVSREVLWGSGISDGEINCKRGDRTSSEGVVLMEQVVQRAGGSYSFVVRGGRPKGLVSWTVCCV 230
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: A0A662E7S2_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A662E7S2_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 1.340e-5 Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 1
Query: 205 WHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYGYQLTPVGAPMPGLFVSEEIATATSRGGSSIKPISSSSGSFSVKGGKPGFTVSWAITAV 477
++GNV+LD G A I LP F E L + + YQLTP+GAP P L+V+ E+ S F + GG PG TVSW +T +
Sbjct: 583 YNGNVVLDAEGRAVIDLPDWF--EVL--NRDFRYQLTPIGAPGPNLYVASEV----------------SGNRFEIAGGAPGMTVSWQVTGI 653
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Match: A0A4Q2WUJ7_9GAMM (Uncharacterized protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q2WUJ7_9GAMM) HSP 1 Score: 54.7 bits (130), Expect = 1.630e-5 Identity = 36/89 (40.45%), Postives = 46/89 (51.69%), Query Frame = 1
Query: 205 WHGNVLLDEVGAAEIWLPPGFPAETLAGSTTYGYQLTPVGAPMPGLFVSEEIATATSRGGSSIKPISSSSGSFSVKGGKPGFTVSWAIT 471
+ G V LD G+A I +P F A +A + YQLT +GAP PGL+VSEEIA F++ GG PG VSW +T
Sbjct: 318 YDGVVTLDASGSARIEMPAWFEALNMA----FRYQLTAIGAPSPGLYVSEEIA----------------GNRFAIAGGAPGARVSWQVT 386 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11963.1532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11963.1532.1 >prot_E-fasciculatus_F_contig11963.1532.1 ID=prot_E-fasciculatus_F_contig11963.1532.1|Name=mRNA_E-fasciculatus_F_contig11963.1532.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=174bp MISLLGLFALFFVKRSLLGPAEDPGMCGVIKSLEADSSGEIRGTAGKAEGback to top mRNA from alignment at E-fasciculatus_F_contig11963:3127..4037- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11963.1532.1 ID=mRNA_E-fasciculatus_F_contig11963.1532.1|Name=mRNA_E-fasciculatus_F_contig11963.1532.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=911bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11963:3127..4037- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11963:3127..4037- >mRNA_E-fasciculatus_F_contig11963.1532.1 ID=mRNA_E-fasciculatus_F_contig11963.1532.1|Name=mRNA_E-fasciculatus_F_contig11963.1532.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11963:3127..4037- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |