prot_E-fasciculatus_F_contig11963.1531.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig11963.1531.1
Unique Nameprot_E-fasciculatus_F_contig11963.1531.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length277
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11963.1531.1 vs. uniprot
Match: D8LDF9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF9_ECTSI)

HSP 1 Score: 426 bits (1094), Expect = 4.470e-145
Identity = 233/274 (85.04%), Postives = 242/274 (88.32%), Query Frame = 0 
Query:    1 AGARGPSEPDTADGDKKRLLRPSNPGAEESLLRGVREGPLRDALAALLTSTVMDEDGGRVLAPSFPSISALCELKYSEPIGPPRASAVERVILARPGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTAAIASALREAAATVRLGGAAAAEGGANQTKRRPCILESLSLAGNRIEDAGAAALSDMLEAQGEPDQGSIETRHINGRNAVSAPELFPSLAWLSVAGNPGISGDARERLLKAGVNRQYMRRRRGSENHPQTITMTV 274
            AGARGPSE   ADGD KRLLRPS PGAEE+LLRGVREGPLRDALAALLTSTVM EDGGRVLAPSFPSISALCELKYSEPIGPP+ASAVER ILARPGVLLRLSLAGKRIGDRGAMALAPALAA+RSVDLRSNNIGDVGT  IASALREAAATVRLGG AA   GANQTK   C+LESLSLAGNRIEDAGAAALSDMLE Q E D+ SI  RH  GRN  SAPELFPSLAWLSVAGNPGISGDARERLL+AGVNRQ MRRRRGSEN   ++ + V
Sbjct:  245 AGARGPSELHPADGDNKRLLRPSKPGAEEALLRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISALCELKYSEPIGPPQASAVERAILARPGVLLRLSLAGKRIGDRGAMALAPALAAIRSVDLRSNNIGDVGTTTIASALREAAATVRLGGPAA---GANQTKSSLCVLESLSLAGNRIEDAGAAALSDMLEVQNENDKESITNRHPRGRNVTSAPELFPSLAWLSVAGNPGISGDARERLLQAGVNRQEMRRRRGSENQQPSMVVIV 515
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BLAST of mRNA_E-fasciculatus_F_contig11963.1531.1 vs. uniprot
Match: A0A6H5JCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ5_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 6.520e-127
Identity = 231/335 (68.96%), Postives = 241/335 (71.94%), Query Frame = 0 
Query:    1 AGARGPSEPDTADGDKKRLLRPSNPGAEESLLRGVREGPLRDALAALLTSTVMDEDGGRVLAPSFPSISALCELKYSEPIGPPRASAVERVILAR-----------------------------------------------------------PGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTAAIASALREAAATVRLGGAAAAEGGANQTKRRPCILESLSLAGNRIEDAGAAALSDMLEAQGEPDQGSIETRHINGRNAVSAPELFPSLAWLSVAGNPGISGDARERLLKAGVNRQYMRRRRGSENHPQTITMTVIA 276
            AGARG S+P +ADGD KR LRPS PG EE+LLRGVREGPLRDALAALLTSTVM EDGGRVLAPSFPSISA+CELKYSEPIGP +ASAVERVILAR                                                           PGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGT AIASALREAA TVRLGGAAA   GAN TK R CILE+LSLAGNRIEDAGAAALSDMLEAQ E D+ S   RH  GRNA SAPELFP L WLSVAGNPGISGDARERLL+AGV+RQ MRR  GSEN  Q  +M VIA
Sbjct:  244 AGARGHSKPHSADGDNKRFLRPSKPG-EEALLRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISAMCELKYSEPIGPRQASAVERVILARSVILSLVVSINLANRLANDKTSVRCTVFHAGLAFSFGFPFVSFHCFSVLCMPRYGFPFRPGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTTAIASALREAAVTVRLGGAAA---GANHTKNRSCILETLSLAGNRIEDAGAAALSDMLEAQDENDKESTINRHSWGRNATSAPELFPPLVWLSVAGNPGISGDARERLLQAGVHRQEMRRHSGSEN--QQPSMVVIA 572
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11963.1531.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDF9_ECTSI4.470e-14585.04Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JCJ5_9PHAE6.520e-12768.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 96..123
e-value: 2.5
score: 14.3
coord: 124..148
e-value: 22.0
score: 7.7
coord: 172..199
e-value: 0.25
score: 20.4
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 39..240
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 71..148
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 175..194
e-value: 0.0091
score: 16.0
coord: 125..143
e-value: 0.015
score: 15.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 38..203
e-value: 1.9E-17
score: 64.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11963contigE-fasciculatus_F_contig11963:13..1530 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11963.1531.1mRNA_E-fasciculatus_F_contig11963.1531.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig11963 13..1530 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig11963.1531.1 ID=prot_E-fasciculatus_F_contig11963.1531.1|Name=mRNA_E-fasciculatus_F_contig11963.1531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=277bp
AGARGPSEPDTADGDKKRLLRPSNPGAEESLLRGVREGPLRDALAALLTS
TVMDEDGGRVLAPSFPSISALCELKYSEPIGPPRASAVERVILARPGVLL
RLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTAAIASALREAA
ATVRLGGAAAAEGGANQTKRRPCILESLSLAGNRIEDAGAAALSDMLEAQ
GEPDQGSIETRHINGRNAVSAPELFPSLAWLSVAGNPGISGDARERLLKA
GVNRQYMRRRRGSENHPQTITMTVIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt