mRNA_E-fasciculatus_F_contig11963.1531.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11963.1531.1
Unique NamemRNA_E-fasciculatus_F_contig11963.1531.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11963.1531.1 vs. uniprot
Match: D8LDF9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF9_ECTSI)

HSP 1 Score: 426 bits (1094), Expect = 4.470e-145
Identity = 233/274 (85.04%), Postives = 242/274 (88.32%), Query Frame = 1 
Query:    1 AGARGPSEPDTADGDKKRLLRPSNPGAEESLLRGVREGPLRDALAALLTSTVMDEDGGRVLAPSFPSISALCELKYSEPIGPPRASAVERVILARPGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTAAIASALREAAATVRLGGAAAAEGGANQTKRRPCILESLSLAGNRIEDAGAAALSDMLEAQGEPDQGSIETRHINGRNAVSAPELFPSLAWLSVAGNPGISGDARERLLKAGVNRQYMRRRRGSENHPQTITMTV 822
            AGARGPSE   ADGD KRLLRPS PGAEE+LLRGVREGPLRDALAALLTSTVM EDGGRVLAPSFPSISALCELKYSEPIGPP+ASAVER ILARPGVLLRLSLAGKRIGDRGAMALAPALAA+RSVDLRSNNIGDVGT  IASALREAAATVRLGG AA   GANQTK   C+LESLSLAGNRIEDAGAAALSDMLE Q E D+ SI  RH  GRN  SAPELFPSLAWLSVAGNPGISGDARERLL+AGVNRQ MRRRRGSEN   ++ + V
Sbjct:  245 AGARGPSELHPADGDNKRLLRPSKPGAEEALLRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISALCELKYSEPIGPPQASAVERAILARPGVLLRLSLAGKRIGDRGAMALAPALAAIRSVDLRSNNIGDVGTTTIASALREAAATVRLGGPAA---GANQTKSSLCVLESLSLAGNRIEDAGAAALSDMLEVQNENDKESITNRHPRGRNVTSAPELFPSLAWLSVAGNPGISGDARERLLQAGVNRQEMRRRRGSENQQPSMVVIV 515
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BLAST of mRNA_E-fasciculatus_F_contig11963.1531.1 vs. uniprot
Match: A0A6H5JCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ5_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 6.520e-127
Identity = 231/335 (68.96%), Postives = 241/335 (71.94%), Query Frame = 1 
Query:    1 AGARGPSEPDTADGDKKRLLRPSNPGAEESLLRGVREGPLRDALAALLTSTVMDEDGGRVLAPSFPSISALCELKYSEPIGPPRASAVERVILAR-----------------------------------------------------------PGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTAAIASALREAAATVRLGGAAAAEGGANQTKRRPCILESLSLAGNRIEDAGAAALSDMLEAQGEPDQGSIETRHINGRNAVSAPELFPSLAWLSVAGNPGISGDARERLLKAGVNRQYMRRRRGSENHPQTITMTVIA 828
            AGARG S+P +ADGD KR LRPS PG EE+LLRGVREGPLRDALAALLTSTVM EDGGRVLAPSFPSISA+CELKYSEPIGP +ASAVERVILAR                                                           PGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGT AIASALREAA TVRLGGAAA   GAN TK R CILE+LSLAGNRIEDAGAAALSDMLEAQ E D+ S   RH  GRNA SAPELFP L WLSVAGNPGISGDARERLL+AGV+RQ MRR  GSEN  Q  +M VIA
Sbjct:  244 AGARGHSKPHSADGDNKRFLRPSKPG-EEALLRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISAMCELKYSEPIGPRQASAVERVILARSVILSLVVSINLANRLANDKTSVRCTVFHAGLAFSFGFPFVSFHCFSVLCMPRYGFPFRPGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTTAIASALREAAVTVRLGGAAA---GANHTKNRSCILETLSLAGNRIEDAGAAALSDMLEAQDENDKESTINRHSWGRNATSAPELFPPLVWLSVAGNPGISGDARERLLQAGVHRQEMRRHSGSEN--QQPSMVVIA 572
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11963.1531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDF9_ECTSI4.470e-14585.04Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JCJ5_9PHAE6.520e-12768.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11963contigE-fasciculatus_F_contig11963:13..1530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_000770.1
Exons2
Model size831
Cds size831
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927705.2919102-CDS-E-fasciculatus_F_contig11963:12..2961622927705.2919102-CDS-E-fasciculatus_F_contig11963:12..296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11963 13..296 +
1695995658.4869993-CDS-E-fasciculatus_F_contig11963:12..2961695995658.4869993-CDS-E-fasciculatus_F_contig11963:12..296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11963 13..296 +
1622927705.3079886-CDS-E-fasciculatus_F_contig11963:983..15301622927705.3079886-CDS-E-fasciculatus_F_contig11963:983..1530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11963 984..1530 +
1695995658.495546-CDS-E-fasciculatus_F_contig11963:983..15301695995658.495546-CDS-E-fasciculatus_F_contig11963:983..1530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11963 984..1530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11963.1531.1prot_E-fasciculatus_F_contig11963.1531.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11963 13..1530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11963.1531.1

>prot_E-fasciculatus_F_contig11963.1531.1 ID=prot_E-fasciculatus_F_contig11963.1531.1|Name=mRNA_E-fasciculatus_F_contig11963.1531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=277bp
AGARGPSEPDTADGDKKRLLRPSNPGAEESLLRGVREGPLRDALAALLTS
TVMDEDGGRVLAPSFPSISALCELKYSEPIGPPRASAVERVILARPGVLL
RLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTAAIASALREAA
ATVRLGGAAAAEGGANQTKRRPCILESLSLAGNRIEDAGAAALSDMLEAQ
GEPDQGSIETRHINGRNAVSAPELFPSLAWLSVAGNPGISGDARERLLKA
GVNRQYMRRRRGSENHPQTITMTVIA*
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mRNA from alignment at E-fasciculatus_F_contig11963:13..1530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11963.1531.1 ID=mRNA_E-fasciculatus_F_contig11963.1531.1|Name=mRNA_E-fasciculatus_F_contig11963.1531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11963:13..1530+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGGCGCACGAGGTCCGTCGGAACCGGACACCGCGGACGGTGACAAAAA
GCGCCTCCTGCGACCATCAAACCCAGGGGCAGAAGAAAGCCTCCTTCGGG
GAGTGCGGGAGGGGCCGTTGAGGGACGCTCTGGCGGCCCTGTTGACCTCC
ACCGTCATGGACGAGGACGGCGGGAGGGTCCTGGCCCCGAGCTTCCCGTC
CATCTCGGCGCTGTGCGAGCTCAAGTACAGCGAGCCGATCGGCCCACCGC
GGGCATCTGCCGTAGAGAGGGTCATCCTTGCAAGGTGCGTGTGTTCCATT
GCTTACAAGTAGCACCGACCGCGCAAACCGGCTGACCAATGAGAAGACGT
CAGTCGGTGTGGGTGCACGCACGTATTTTTTATGCTGAACCAATCGCTCC
AATCGGTTGAAGAATGCCTAGAGGTCAAAAGTGCCCACGCGAGACAATTT
CGGTCCTTCGGACGGTGGACCAGATCTTGGCGAACGACGAGAAGTTGACG
ACGCGAACACAAACAAACCTCAACGTCTCTACGTGTGTGTGCGTGAACAA
GGCTATGCTCTTCACCTTGTAGGCATGGCGGGGATGGTTGTTTCCGGGTG
TCAGTTTCCGAATTTGTGCTCATGGCCGCTCGCTGACCACGTCCTTCGTT
GTTCTGTCTAGATAGTAGATTGCCGTGGGGCACGGCTGCTTCCTTCTCCA
ATGGAACCCAAAAATTCTCGACACGGCGAGCCGTAATACTTGGCGCCCCT
GTGCCGGGGATGGTCACACGCGGTCACCGCCAAGAGGCAACGCCCCTCAT
CTCGTGAACTGGGAGAAAACCACAGTGTAGTGGCACTCACTTTGTGTTCG
TTATATTTCTTTGTCGTACCACGGTTCACGTTTTTCTCACGCAGGCCTGA
CGTTCTCCTCCGGTTCACTTTGTTTATGTCATTTTTCTGTGGTGTGCCAC
GGCACACGGTTTTCCATTCAGGCCCGGCGTTCTCCTCCGGTTGAGCCTTG
CGGGAAAAAGGATCGGAGATCGAGGAGCAATGGCGCTTGCCCCGGCTCTG
GCCGCGGTTCGGAGCGTCGACCTGCGAAGCAACAACATCGGCGACGTCGG
AACGGCAGCGATAGCTTCGGCGCTGCGTGAGGCCGCGGCGACCGTTCGGC
TCGGCGGGGCAGCGGCGGCGGAAGGAGGAGCGAATCAAACAAAGAGGCGG
CCGTGTATCCTGGAAAGCCTTAGCCTTGCCGGCAATCGGATCGAGGACGC
GGGAGCGGCGGCTCTGAGCGACATGCTGGAGGCGCAAGGCGAACCCGACC
AAGGATCGATAGAAACACGCCACATTAACGGGAGGAACGCGGTGTCGGCG
CCCGAGCTGTTCCCATCTCTGGCCTGGCTTAGTGTGGCGGGAAATCCGGG
CATATCGGGCGACGCTAGAGAGCGGCTGCTTAAGGCGGGTGTAAACCGCC
AATATATGCGCCGCCGTCGCGGGTCCGAGAACCACCCACAAACGATAACG
ATGACAGTCATCGCATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11963:13..1530+

>mRNA_E-fasciculatus_F_contig11963.1531.1 ID=mRNA_E-fasciculatus_F_contig11963.1531.1|Name=mRNA_E-fasciculatus_F_contig11963.1531.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1662bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11963:13..1530+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGGCGCACGAGGTCCGTCGGAACCGGACACCGCGGACGGTGACAAAAA
GCGCCTCCTGCGACCATCAAACCCAGGGGCAGAAGAAAGCCTCCTTCGGG
GAGTGCGGGAGGGGCCGTTGAGGGACGCTCTGGCGGCCCTGTTGACCTCC
ACCGTCATGGACGAGGACGGCGGGAGGGTCCTGGCCCCGAGCTTCCCGTC
CATCTCGGCGCTGTGCGAGCTCAAGTACAGCGAGCCGATCGGCCCACCGC
GGGCATCTGCCGTAGAGAGGGTCATCCTTGCAAGGCTGGCGCACGAGGTC
CGTCGGAACCGGACACCGCGGACGGTGACAAAAAGCGCCTCCTGCGACCA
TCAAACCCAGGGGCAGAAGAAAGCCTCCTTCGGGGAGTGCGGGAGGGGCC
GTTGAGGGACGCTCTGGCGGCCCTGTTGACCTCCACCGTCATGGACGAGG
ACGGCGGGAGGGTCCTGGCCCCGAGCTTCCCGTCCATCTCGGCGCTGTGC
GAGCTCAAGTACAGCGAGCCGATCGGCCCACCGCGGGCATCTGCCGTAGA
GAGGGTCATCCTTGCAAGGCCCGGCGTTCTCCTCCGGTTGAGCCTTGCGG
GAAAAAGGATCGGAGATCGAGGAGCAATGGCGCTTGCCCCGGCTCTGGCC
GCGGTTCGGAGCGTCGACCTGCGAAGCAACAACATCGGCGACGTCGGAAC
GGCAGCGATAGCTTCGGCGCTGCGTGAGGCCGCGGCGACCGTTCGGCTCG
GCGGGGCAGCGGCGGCGGAAGGAGGAGCGAATCAAACAAAGAGGCGGCCG
TGTATCCTGGAAAGCCTTAGCCTTGCCGGCAATCGGATCGAGGACGCGGG
AGCGGCGGCTCTGAGCGACATGCTGGAGGCGCAAGGCGAACCCGACCAAG
GATCGATAGAAACACGCCACATTAACGGGAGGAACGCGGTGTCGGCGCCC
GAGCTGTTCCCATCTCTGGCCTGGCTTAGTGTGGCGGGAAATCCGGGCAT
ATCGGGCGACGCTAGAGAGCGGCTGCTTAAGGCGGGTGTAAACCGCCAAT
ATATGCGCCGCCGTCGCGGGTCCGAGAACCACCCACAAACGATAACGATG
ACAGTCATCGCATAAGCCCGGCGTTCTCCTCCGGTTGAGCCTTGCGGGAA
AAAGGATCGGAGATCGAGGAGCAATGGCGCTTGCCCCGGCTCTGGCCGCG
GTTCGGAGCGTCGACCTGCGAAGCAACAACATCGGCGACGTCGGAACGGC
AGCGATAGCTTCGGCGCTGCGTGAGGCCGCGGCGACCGTTCGGCTCGGCG
GGGCAGCGGCGGCGGAAGGAGGAGCGAATCAAACAAAGAGGCGGCCGTGT
ATCCTGGAAAGCCTTAGCCTTGCCGGCAATCGGATCGAGGACGCGGGAGC
GGCGGCTCTGAGCGACATGCTGGAGGCGCAAGGCGAACCCGACCAAGGAT
CGATAGAAACACGCCACATTAACGGGAGGAACGCGGTGTCGGCGCCCGAG
CTGTTCCCATCTCTGGCCTGGCTTAGTGTGGCGGGAAATCCGGGCATATC
GGGCGACGCTAGAGAGCGGCTGCTTAAGGCGGGTGTAAACCGCCAATATA
TGCGCCGCCGTCGCGGGTCCGAGAACCACCCACAAACGATAACGATGACA
GTCATCGCATAA
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