mRNA_E-fasciculatus_F_contig11962.1530.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11962.1530.1
Unique NamemRNA_E-fasciculatus_F_contig11962.1530.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11962.1530.1 vs. uniprot
Match: D7FWK9_ECTSI (IBR domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK9_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 1.530e-96
Identity = 229/322 (71.12%), Postives = 236/322 (73.29%), Query Frame = 1 
Query:   10 QVARFYCAYCMRNRPGTSRRRFEGNGGCSHEFCKGCLEDYLFQRIMVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACEECGHRGRRPSIPSSPYALQPPSLPXXXXXXPRLLSP-SRRASAAAA-SHEADADAGANEDKTCQSCGSMRXXXXXXXXXXXXQSHRPKRHSVPRDAAAAGS-------GVGRKRRKGFAWSPRWLPHGRAAALDGTASGARDESRQRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEIDEKSATGGKEGGEQTEA---ASTAGTYAVGFRHRTCP 939
            +VARFYCAYCMRN+PGTSRRRFEGNGGCSHEFCK CLEDYLFQRIMVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGAC                                 LLS  SRRASAA A SHE DA AGANED TCQSCGS  XXXXXXXXXXXX SHR KRH VPRDAA AG+       G GRK RKGFAWSPRW PHGRA +LD TA+G            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PE+DEKSATG   G    EA   AS AGT+A G RHRTCP
Sbjct:   52 KVARFYCAYCMRNQPGTSRRRFEGNGGCSHEFCKACLEDYLFQRIMVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACXXXXXXXXXXXXXXXXXXXXXXXX---------LLSAISRRASAAXADSHEEDAGAGANEDNTCQSCGSTXXXXXXXXXXXXX-SHRQKRHPVPRDAATAGAARTAPGGGAGRKGRKGFAWSPRWSPHGRAPSLDRTATGGDXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPPEVDEKSATGAGVGAGDKEAEGAASAAGTHAAGLRHRTCP 356
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BLAST of mRNA_E-fasciculatus_F_contig11962.1530.1 vs. uniprot
Match: A0A6H5KA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA60_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.090e-58
Identity = 141/240 (58.75%), Postives = 151/240 (62.92%), Query Frame = 1 
Query:   10 QVARFYCAYCMRNRPGTSRRRFEGNGGCSHEFCKGCLEDYLFQRIMVGHHSLHPCPKF-----GEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACEECGHRGRRPSIPSSPYALQPPSLPXXXXXXPRLLSPSRRASAAAA-SHEADADAGANEDKTCQSCGSMRXXXXXXXXXXXXQSHRPKRHSVPRDAAAA-------GSGVGRKRRKGFAWSPRWLPHGRAA-ALDGTASG 687
            ++ARFYCAYCMRN+PGTSRRRFEGNGGCSHEFCK CLEDYLFQRIMVGHHSLHPCPK      G  S  S     D  R V+   ++      +GLSGACEECGH                            L S S+RASAAAA SHE D DAGA ED TCQSCGS RXXXXXXXXXXXX        SVPRDAAAA       G G GR  RKGFAWSP W PH R   +LDGTA+G
Sbjct:    7 KIARFYCAYCMRNQPGTSRRRFEGNGGCSHEFCKACLEDYLFQRIMVGHHSLHPCPKVDSADQGTTSFASDVICGDPGRSVK---HQRPDTLQQGLSGACEECGHXXXXXXXXXXXXXXXXXXX--------LLSSLSQRASAAAADSHEEDTDAGAKEDNTCQSCGSTRXXXXXXXXXXXXXXXXXX-XSVPRDAAAAMAAGRAPGGGDGRTGRKGFAWSPMWSPHRRGTPSLDGTATG 234
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11962.1530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWK9_ECTSI1.530e-9671.12IBR domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KA60_9PHAE1.090e-5858.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11962contigE-fasciculatus_F_contig11962:2231..4203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size939
Cds size939
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11962.1530.1prot_E-fasciculatus_F_contig11962.1530.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11962 2231..4203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927705.2222676-CDS-E-fasciculatus_F_contig11962:2230..23411622927705.2222676-CDS-E-fasciculatus_F_contig11962:2230..2341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11962 2231..2341 +
1695995658.446788-CDS-E-fasciculatus_F_contig11962:2230..23411695995658.446788-CDS-E-fasciculatus_F_contig11962:2230..2341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11962 2231..2341 +
1622927705.232436-CDS-E-fasciculatus_F_contig11962:2722..27911622927705.232436-CDS-E-fasciculatus_F_contig11962:2722..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11962 2723..2791 +
1695995658.4577923-CDS-E-fasciculatus_F_contig11962:2722..27911695995658.4577923-CDS-E-fasciculatus_F_contig11962:2722..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11962 2723..2791 +
1622927705.2450557-CDS-E-fasciculatus_F_contig11962:3082..31781622927705.2450557-CDS-E-fasciculatus_F_contig11962:3082..3178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11962 3083..3178 +
1695995658.4674737-CDS-E-fasciculatus_F_contig11962:3082..31781695995658.4674737-CDS-E-fasciculatus_F_contig11962:3082..3178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11962 3083..3178 +
1622927705.2568643-CDS-E-fasciculatus_F_contig11962:3540..42031622927705.2568643-CDS-E-fasciculatus_F_contig11962:3540..4203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11962 3541..4203 +
1695995658.4782453-CDS-E-fasciculatus_F_contig11962:3540..42031695995658.4782453-CDS-E-fasciculatus_F_contig11962:3540..4203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11962 3541..4203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11962.1530.1

>prot_E-fasciculatus_F_contig11962.1530.1 ID=prot_E-fasciculatus_F_contig11962.1530.1|Name=mRNA_E-fasciculatus_F_contig11962.1530.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=313bp
PKTQVARFYCAYCMRNRPGTSRRRFEGNGGCSHEFCKGCLEDYLFQRIMV
GHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACEE
CGHRGRRPSIPSSPYALQPPSLPSPSSPSPRLLSPSRRASAAAASHEADA
DAGANEDKTCQSCGSMRRRHHHHHHNHHHQSHRPKRHSVPRDAAAAGSGV
GRKRRKGFAWSPRWLPHGRAAALDGTASGARDESRQRRNKQPDERQQQQQ
QQRQQQQRQQRRELSPEAAAASGADPPEIDEKSATGGKEGGEQTEAASTA
GTYAVGFRHRTCP
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mRNA from alignment at E-fasciculatus_F_contig11962:2231..4203+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11962.1530.1 ID=mRNA_E-fasciculatus_F_contig11962.1530.1|Name=mRNA_E-fasciculatus_F_contig11962.1530.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1973bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11962:2231..4203+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCAAAACTCAGGTCGCGCGCTTTTACTGTGCGTATTGCATGAGAAACCG
GCCGGGGACCAGCCGCCGCAGGTTCGAGGGGAATGGAGGCTGCAGCCACG
AGTTTTGCAAGGTACATAGGTGGCATCGGGACGGAAGGGGTGGAAGCGCG
ATGGGCGGAGAAATGCCGGGCTCCACAACCTTTGGCTAGCGTAGATGTGC
CATCACTTAAGACTCATCTCTTGAGACGCCTATCAAGCCCTCTTGCTGGC
GTCTCTTCTCGCGCGTTCCTATACTGCTCGAGTGTTTGGGTGTTTTGATT
GGTTCTGTCCACAAACCGAGGCCTGCCTTCCCTCTCTCCTTGAAATGGGC
GTAGAGATCGTAGCGTATCCGCCCCGCCCCTCCCGCCCTCTCTACCTCAC
GGTGCCCCCTCCCCCCTGAAGCTCACGGGTACAAAGCAAGCTGAACTATG
GTGTTTTCGCCTTGCCTTTCCGCTCCATTCTCGTGAACTCAGGGGTGTCT
GGAAGACTACCTCTTTCAACGTATCATGGTCGGGCACCACTCTCTGCACC
CCTGCCCTAAGGTACGTGTCCCCGTGACATGACCTCAGTGCGGCGAAACC
AGCCAACTCATACGTAGGAAGATATTTCGTGCCTGGTGTAATTTTAGCTC
TGCACAAGCGGCATCCTTGATCAAACGTGCTTCTTGTTCTTCGGAATCCA
CCGTGCTGCGTCCCCCCTTCTCGCTAACCCGCTCCATTCGCTCTGAGCCC
CCCAACCCCTCCATCCCCCCCCTTCGTGTTGGCCTGTCCATACCTATATG
TGCACTTCTTTTGTGTTGGTTGTGTTGTTTCCGACCGGGCGCACACGTGC
AGTTCGGGGAGGAATCCTGCCGCTCGTCGGCGACAAGGAACGACGTGCGA
CGCATCGTCCGAGCCGAGGTGTACGAGGAGCACCGCAGAAGGCTCGAGGT
CAGAGAGGAACCTTTCAGGAGAACTGAGACTTGAGGGTGCACAGCGAATA
TACATTTTCACGAGAACGCTGAGGTTTAGGGAGATCGAAACGGCAAGCGA
CGCATCCGAACGATTTTCGTTCGATTCTCGCCTGATCACCACATCGACGT
AACGAGGACGTTGAGACTTTCCAAGGATTTCATTTGTTGAAAAAAAACAA
AAAAATAAAAGGGCGAGCAGTGGGAAACGCCAGCTCTATCATAGATCATG
GATACGAGTTTGCGCAAGACAAGGGCGCCGCCTCGCTCGCGTGCTACGTT
TGTCTGCGTGGAGCCGCTGACCGCCCAAACAACCATCAACGCCCCGATGA
CCTCCAACAGGGCTTGTCGGGAGCCTGCGAAGAATGCGGCCACCGTGGAC
GACGGCCGTCGATCCCGTCGAGCCCGTACGCACTGCAGCCGCCCTCGCTG
CCGTCGCCGTCCTCTCCGTCCCCCCGCCTCTTATCTCCCTCCCGCCGGGC
TTCTGCGGCAGCAGCTAGTCACGAAGCCGATGCCGATGCTGGAGCCAACG
AAGACAAGACGTGTCAGTCGTGCGGATCAATGCGAAGGCGCCATCACCAC
CACCACCACAACCACCACCACCAAAGCCATCGTCCAAAACGCCACTCCGT
CCCTCGCGACGCTGCTGCGGCCGGTTCGGGCGTCGGCCGGAAAAGGAGGA
AAGGGTTCGCTTGGAGCCCAAGGTGGTTGCCACACGGCCGCGCCGCCGCT
CTCGACGGCACCGCTAGCGGTGCCAGGGATGAAAGCCGGCAACGGCGAAA
CAAGCAGCCAGACGAACGGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGC
AGCAGCGGCAGCAGCGAAGGGAGCTATCGCCAGAGGCGGCGGCAGCGTCT
GGCGCGGACCCGCCTGAGATTGACGAGAAAAGCGCAACGGGGGGGAAGGA
GGGGGGCGAACAAACGGAGGCTGCTTCCACTGCGGGCACATATGCGGTTG
GTTTTCGTCACCGTACATGCCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11962:2231..4203+

>mRNA_E-fasciculatus_F_contig11962.1530.1 ID=mRNA_E-fasciculatus_F_contig11962.1530.1|Name=mRNA_E-fasciculatus_F_contig11962.1530.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1878bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11962:2231..4203+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCAAAACTCAGGTCGCGCGCTTTTACTGTGCGTATTGCATGAGAAACCG
GCCGGGGACCAGCCGCCGCAGGTTCGAGGGGAATGGAGGCTGCAGCCACG
AGTTTTGCAAGCCCAAAACTCAGGTCGCGCGCTTTTACTGTGCGTATTGC
ATGAGAAACCGGCCGGGGACCAGCCGCCGCAGGTTCGAGGGGAATGGAGG
CTGCAGCCACGAGTTTTGCAAGGGGTGTCTGGAAGACTACCTCTTTCAAC
GTATCATGGTCGGGCACCACTCTCTGCACCCCTGCCCTAAGGGGTGTCTG
GAAGACTACCTCTTTCAACGTATCATGGTCGGGCACCACTCTCTGCACCC
CTGCCCTAAGTTCGGGGAGGAATCCTGCCGCTCGTCGGCGACAAGGAACG
ACGTGCGACGCATCGTCCGAGCCGAGGTGTACGAGGAGCACCGCAGAAGG
CTCGAGTTCGGGGAGGAATCCTGCCGCTCGTCGGCGACAAGGAACGACGT
GCGACGCATCGTCCGAGCCGAGGTGTACGAGGAGCACCGCAGAAGGCTCG
AGGGCTTGTCGGGAGCCTGCGAAGAATGCGGCCACCGTGGACGACGGCCG
TCGATCCCGTCGAGCCCGTACGCACTGCAGCCGCCCTCGCTGCCGTCGCC
GTCCTCTCCGTCCCCCCGCCTCTTATCTCCCTCCCGCCGGGCTTCTGCGG
CAGCAGCTAGTCACGAAGCCGATGCCGATGCTGGAGCCAACGAAGACAAG
ACGTGTCAGTCGTGCGGATCAATGCGAAGGCGCCATCACCACCACCACCA
CAACCACCACCACCAAAGCCATCGTCCAAAACGCCACTCCGTCCCTCGCG
ACGCTGCTGCGGCCGGTTCGGGCGTCGGCCGGAAAAGGAGGAAAGGGTTC
GCTTGGAGCCCAAGGTGGTTGCCACACGGCCGCGCCGCCGCTCTCGACGG
CACCGCTAGCGGTGCCAGGGATGAAAGCCGGCAACGGCGAAACAAGCAGC
CAGACGAACGGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCGG
CAGCAGCGAAGGGAGCTATCGCCAGAGGCGGCGGCAGCGTCTGGCGCGGA
CCCGCCTGAGATTGACGAGAAAAGCGCAACGGGGGGGAAGGAGGGGGGCG
AACAAACGGAGGCTGCTTCCACTGCGGGCACATATGCGGTTGGTTTTCGT
CACCGTACATGCCCGGGCTTGTCGGGAGCCTGCGAAGAATGCGGCCACCG
TGGACGACGGCCGTCGATCCCGTCGAGCCCGTACGCACTGCAGCCGCCCT
CGCTGCCGTCGCCGTCCTCTCCGTCCCCCCGCCTCTTATCTCCCTCCCGC
CGGGCTTCTGCGGCAGCAGCTAGTCACGAAGCCGATGCCGATGCTGGAGC
CAACGAAGACAAGACGTGTCAGTCGTGCGGATCAATGCGAAGGCGCCATC
ACCACCACCACCACAACCACCACCACCAAAGCCATCGTCCAAAACGCCAC
TCCGTCCCTCGCGACGCTGCTGCGGCCGGTTCGGGCGTCGGCCGGAAAAG
GAGGAAAGGGTTCGCTTGGAGCCCAAGGTGGTTGCCACACGGCCGCGCCG
CCGCTCTCGACGGCACCGCTAGCGGTGCCAGGGATGAAAGCCGGCAACGG
CGAAACAAGCAGCCAGACGAACGGCAGCAGCAGCAGCAGCAGCAGCGGCA
GCAGCAGCAGCGGCAGCAGCGAAGGGAGCTATCGCCAGAGGCGGCGGCAG
CGTCTGGCGCGGACCCGCCTGAGATTGACGAGAAAAGCGCAACGGGGGGG
AAGGAGGGGGGCGAACAAACGGAGGCTGCTTCCACTGCGGGCACATATGC
GGTTGGTTTTCGTCACCGTACATGCCCG
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