mRNA_E-fasciculatus_F_contig1195.1522.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1195.1522.1
Unique NamemRNA_E-fasciculatus_F_contig1195.1522.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1195.1522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1195contigE-fasciculatus_F_contig1195:4325..6625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927704.4792562-CDS-E-fasciculatus_F_contig1195:4326..44181622927704.4792562-CDS-E-fasciculatus_F_contig1195:4326..4418Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1195 4327..4418 -
1695995658.048775-CDS-E-fasciculatus_F_contig1195:4326..44181695995658.048775-CDS-E-fasciculatus_F_contig1195:4326..4418Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1195 4327..4418 -
1622927704.498754-CDS-E-fasciculatus_F_contig1195:6456..66251622927704.498754-CDS-E-fasciculatus_F_contig1195:6456..6625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1195 6457..6625 -
1695995658.0590246-CDS-E-fasciculatus_F_contig1195:6456..66251695995658.0590246-CDS-E-fasciculatus_F_contig1195:6456..6625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1195 6457..6625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1195.1522.1prot_E-fasciculatus_F_contig1195.1522.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1195 4327..6625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1195.1522.1

>prot_E-fasciculatus_F_contig1195.1522.1 ID=prot_E-fasciculatus_F_contig1195.1522.1|Name=mRNA_E-fasciculatus_F_contig1195.1522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=87bp
WKNEHSVKFDRLGDTYVGHGTRIGAQHSEGLRRHASARETARATVWGGFF
GAPTRSGEASTAACCCISAVRARNYGGRRLNSRLAAG
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mRNA from alignment at E-fasciculatus_F_contig1195:4325..6625-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1195.1522.1 ID=mRNA_E-fasciculatus_F_contig1195.1522.1|Name=mRNA_E-fasciculatus_F_contig1195.1522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2301bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1195:4325..6625- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGAAAAATGAACATTCAGTCAAGTTCGATCGATTGGGTGATACATACGT
TGGACACGGCACACGCATCGGAGCCCAACATTCGGAGGGTTTGCGGAGAC
ACGCGAGCGCGAGGGAGACAGCTCGCGCGACGGTGTGGGGGGGCTTTTTC
GGCGCGCCAACGCGCTCAGGTAGGCCGGAGGGGGGTTGGGTGTGTTTGTG
TTCTGATCTTAGCGGCACGAGATTGTGTATTGCCGGATTATCATCAGACT
GAACCAAACCAAGGCAGCAGATGGACGAGCAGAGCAGTATTGCCTTTCCT
TCTCCATTCCCGTCGGGCAGGAAGCGCGCCGGTGCGAAGCTCGAGATCGG
ATCTGACCGGTCTCCGAGCGGAAGAGCGAGCTCTACTCCCGCCCGGCCCC
CGAGCGGGCGTTGCCCCCGGTGTTGTGTGCGGATCAAAGGTCGCAGCAGC
AGACATGATGAGCTCCGACCGAACGGTGTTTTTTGTTTTTTGTGTGTTGC
ATTTTGAAAAGTAGGCGGAGGAAGCTACAGCCCCACAACCCTCTTCTATC
TAGAATACAATACTGACTTGAGTACATACATCGATCGCTTCTTCCCCTCC
TACAGCAGCAGCAGCAGTATGCAGAAAGTAAAAGGGTGCCAGACCGACCG
ACCGACCGACCGCGCATGATATGATAGTAGTCTTAGTCTGCCTGCCCCGA
GTACGGAAAGGCACAGGCACCGGTGCAAACGTTCTTCTCCCTTGACTCTC
GATCGACTCTCCTGTTGGCTGCTGCGACGTGACCGGAGTCAAAAGCCAAC
TTTGAAGGCACGAACGAGATTGATTTGACTTTCACGGAGTGACATAGAGT
TGCATATTGCATATGCTACTTCCACCATATGCATGAAATGAAAAATTCCG
CGTTGGTGTCTCTTTTGTCTCTTGCATTTTGCACGGATGTTTTTTTTTCG
TCTCTTTGTGACGAGTCAGTCATGCTCTCTCTCTCTCCCGCGCGCGCTGC
CTGCTGTATGTAACACAGGGTTCCTCGATCTTTGCGTATTATTCTAGCAA
CAAGCAGCTCTCGCAACGGCAGTATTGTATACTGCTTGCTTGCTGTCTTT
GTTTGCACGGCCGGCATTGTTTGTGCACGGGCCGCATCGTTAGATCGTTA
TTTCTTGCCGCTGTTGCGATTGTTGCTGCGCTTCCACGAAAGGTTTGGTT
GCGCGGCAAAAAAAGGTATCAGCGTAGTATTGAGTTTTGAGCAACAGAAC
GTGGTTCACTTTTCGGCCTACCTTTGCTTGTTGTAGCATGCATGCGACGC
GCACTTGCTCGAGTGTGATATAGCGGAGTCCGTGAGGCCTCTCGGTTTGC
CCAATCACAGAGAGAGAGAGAGAGAGGAGAGCTTGTGGCCGTGCGTGTGC
TAGCGCCGATGCGCCAACGTGCTCCTGTCGACGCACCATCTTTTTTTTCC
CGCCGTTCGCCCAAGAGGCATATATGTATCACAAACCACGTTTGCACACA
CTCTTTGTGCAGCCCTACAACTACTGCTGTACATGCAGCAGGGGGAGAAC
CGATACAAAAAACAATGTGCGTCCGTTACTCTCTCTCGCTCCACGCAGCA
GTAGATAACAATTGTAGGGCGGCAGTGTACATGTGGCTTGTATGCAAGGG
GGGAGTGAGTGCTGTGATATGGCCGGAAAACACGGCAGAAGGGAGTAAAG
TTCTAGCTCTGGTGCTTGGTTATTTGTCAGATGGTTGAAAATCGATAGAC
GTGTGTTCCAACCCCTGTCTCCAAAATCCAAACATGGATGATGACGCGTG
CACCGTTTTGCAGAGAGCTCTTGTACAACATGTAATATTGTTGTATACAT
GTTTATCTAGACAACTAGATAAATATCGAACGTCGGGGTTTTGGGTGCAT
CCATCATCCATCATCCATCATCCATCCATTCATCTATCGGCGTATCGGCG
TACAGTATAGTACCGGCACAAAGCTCATCATCATCATCATCATCATCATC
ATCATCATCATCATCAGGTGTGGGAGGTGGGAGTACAGCTCTCGGTTCCG
TTACGACAATACACTGCTGCTGCTATAGGCCACAACAGCAGTACAATAGG
CCACTTCCTTCCTCCTGATTTATATGTTCTGCTATTGCCTCCGTTGCACG
TCTTTCTGTGTTGTACTGGTGCTGTGCTGTACTATTGTACTAATTTTGTC
CCCGCAGGCGAAGCCAGCACAGCTGCGTGCTGCTGTATATCTGCGGTTCG
GGCGCGCAATTACGGGGGTCGTCGACTCAACAGCAGACTAGCAGCGGGTG
T
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1195:4325..6625-

>mRNA_E-fasciculatus_F_contig1195.1522.1 ID=mRNA_E-fasciculatus_F_contig1195.1522.1|Name=mRNA_E-fasciculatus_F_contig1195.1522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1195:4325..6625- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGAAAAATGAACATTCAGTCAAGTTCGATCGATTGGGTGATACATACGT
TGGACACGGCACACGCATCGGAGCCCAACATTCGGAGGGTTTGCGGAGAC
ACGCGAGCGCGAGGGAGACAGCTCGCGCGACGGTGTGGGGGGGCTTTTTC
GGCGCGCCAACGCGCTCAGTGGAAAAATGAACATTCAGTCAAGTTCGATC
GATTGGGTGATACATACGTTGGACACGGCACACGCATCGGAGCCCAACAT
TCGGAGGGTTTGCGGAGACACGCGAGCGCGAGGGAGACAGCTCGCGCGAC
GGTGTGGGGGGGCTTTTTCGGCGCGCCAACGCGCTCAGGCGAAGCCAGCA
CAGCTGCGTGCTGCTGTATATCTGCGGTTCGGGCGCGCAATTACGGGGGT
CGTCGACTCAACAGCAGACTAGCAGCGGGTGCGAAGCCAGCACAGCTGCG
TGCTGCTGTATATCTGCGGTTCGGGCGCGCAATTACGGGGGTCGTCGACT
CAACAGCAGACTAGCAGCGGGT
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