mRNA_E-fasciculatus_F_contig11948.1521.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11948.1521.1 vs. uniprot
Match: D7FMG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG6_ECTSI) HSP 1 Score: 569 bits (1466), Expect = 2.080e-196 Identity = 318/392 (81.12%), Postives = 340/392 (86.73%), Query Frame = 1
Query: 16 GENAPVPPFYC---CVNERGSG-DLMDPT-TAKLAATAYKHRKDGQKFLTAVLETSTGVDVSVDSQELVGHVDDQFDSHAEGGKAIVEGFKKVSERIADDGENVDDGILEDSAEVLVGAVENVANNEIVQNVGEVVGDAVGVVHDALREGVKTGSEIVHGAARAMNKAGGVTSGGMPDIEGVEERAERYAETMETQAEGLADHAAEAFDRARENAPDVLSAVDPKGALEEMTEEVGEAVV----ESLGGEVVEEVLEAAVGSIPIAGALIPSYYLVHGGAKAAAGVSSLAAAGTMALVGGVYGIAAAPFDGGASWGKVANASRGVSVWGASMGAEGGLIAAKGAMGFADQVAPGSQLATVPAKVACKMGANSINKMRNSSREVDTQGDGDLE 1164
GENAPVP YC CVNER DLMDPT TAKLA TA+K+RKDG KFLTAVLETS G+DVSVDSQEL GHVD+ FDSHAEGGKAIVEGFK+VSE I+DDG NVDDGILEDSAE +VGAVE+VANNEIVQN GE+VGDAVGVVHDALREGVKTG+E+VHGAARAMNKAGGVTS GMPDIEGVEERAERYAE+METQAEGL+D AAEAFDRARENAPDVL AVDP G LEE E LGGE+ EE LEAAVGSIP+AGALIPSYYL+HGG KAAAG +SLAAAGTMALVGGVYG+AAAPFDGGASWGKVANASRG SVWGASMGAEGGLI+AKGAMGFADQVAPG ATVP KVACKMGAN IN+MRNSSR V+TQG+ D E
Sbjct: 106 GENAPVPASYCRCCCVNERRERRDLMDPTLTAKLATTAFKNRKDGDKFLTAVLETSRGIDVSVDSQELAGHVDEHFDSHAEGGKAIVEGFKRVSEHISDDGANVDDGILEDSAEAIVGAVESVANNEIVQNAGELVGDAVGVVHDALREGVKTGTEVVHGAARAMNKAGGVTSRGMPDIEGVEERAERYAESMETQAEGLSDSAAEAFDRARENAPDVLRAVDPDGTLEEAVXXXXXXXXXXXXEVLGGEIAEEALEAAVGSIPVAGALIPSYYLIHGGVKAAAGATSLAAAGTMALVGGVYGLAAAPFDGGASWGKVANASRGASVWGASMGAEGGLISAKGAMGFADQVAPG---ATVPVKVACKMGANYINQMRNSSRGVNTQGEDDFE 494
BLAST of mRNA_E-fasciculatus_F_contig11948.1521.1 vs. uniprot
Match: A0A6H5JP55_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP55_9PHAE) HSP 1 Score: 348 bits (892), Expect = 9.240e-117 Identity = 195/232 (84.05%), Postives = 210/232 (90.52%), Query Frame = 1
Query: 325 LEDSAEVLVGAVENVANNEIVQNVGEVVGDAVGVVHDALREGVKTGSEIVHGAARAMNKAGGVTSGGMPDIEGVEERAERYAETMETQAEGLADHAAEAFDRARENAPDVLSAVDPKGALE----EMTEEVGEAVVESLGGEVVEEVLEAAVGSIPIAGALIPSYYLVHGGAKAAAGVSSLAAAGTMALVGGVYGIAAAPFDGGASWGKVANASRGVSVWGASMGAEGGLIA 1008
+EDSAE +VGAVE+VA+NEIVQN GEVVGDAVGVVHDALREGVKTG+E+VHGAARAMN+AGGVTS MPDIEGV+ERAERYAE+METQAEGLAD AAEAFD AREN PDVL AVD G LE E+T+E GEAVVE LGGEV EE+LEAA GSIP+AGALIPSYYL+HGG KAAA V+SLAAAGTMALVGGVYGI AAPFDGGASWGKVANASRGVSVWGASMGAEGGLIA
Sbjct: 1 MEDSAEAIVGAVESVASNEIVQNAGEVVGDAVGVVHDALREGVKTGTEVVHGAARAMNQAGGVTSRDMPDIEGVKERAERYAESMETQAEGLADSAAEAFDWARENTPDVLRAVDTDGTLEVMVEEVTQEAGEAVVEILGGEVAEEMLEAAAGSIPVAGALIPSYYLMHGGVKAAAEVTSLAAAGTMALVGGVYGIGAAPFDGGASWGKVANASRGVSVWGASMGAEGGLIA 232
BLAST of mRNA_E-fasciculatus_F_contig11948.1521.1 vs. uniprot
Match: A0A6H5K4Z4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z4_9PHAE) HSP 1 Score: 278 bits (712), Expect = 3.910e-88 Identity = 170/262 (64.89%), Postives = 183/262 (69.85%), Query Frame = 1
Query: 316 DGILEDSAEVLVGAVENVANNEIVQNVGEVVGDAVGVVHDALREGVKTGSEIVHGAARAMNKAGGVTSGGMPDIEGVEERAERYAETMETQAEGLA----------------------------------------------------------DHAAEAFDRARENAPDVLSAVDPKGALEEMTEEV----GEAVVESLGGEVVEEVLEAAVGSIPIAGALIPSYYLVHGGAKAAAGVSSLAAAGTMALVGGVYGIAAAPF 915
DGILEDSAE +VGAVE+VANNEIVQN GEVVGDAVGVVHDALREGVKTG+E+VHGAARAMN+A GVTS GMPDIEGVEERAE +A++METQAEGL AAEAFDRARENAPDVL AVDP G LEE+ EEV GEAVVESLGGEV EE+LEAA GSIP+AGALIPSYYL+HGG KAA GV+SLAAAGTM LVGGVYGIAAAPF
Sbjct: 45 DGILEDSAEAIVGAVESVANNEIVQNAGEVVGDAVGVVHDALREGVKTGTEVVHGAARAMNQASGVTSRGMPDIEGVEERAESFADSMETQAEGLXRCILLRGVKTGTEVVHGAARAMNQASGVTSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEAFDRARENAPDVLGAVDPDGTLEEVVEEVTQEAGEAVVESLGGEVAEELLEAAAGSIPVAGALIPSYYLMHGGVKAAVGVTSLAAAGTMTLVGGVYGIAAAPF 306
BLAST of mRNA_E-fasciculatus_F_contig11948.1521.1 vs. uniprot
Match: A0A6H5KJK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK3_9PHAE) HSP 1 Score: 202 bits (515), Expect = 1.690e-60 Identity = 116/143 (81.12%), Postives = 124/143 (86.71%), Query Frame = 1
Query: 316 DGILEDSAEVLVGAVENVANNEIVQNVGEVVGDAVGVVHDALREGVKTGSEIVHGAARAMNKAGGVTSGGMPDIEGVEERAERYAETMETQAEGLADHAAEAFDRARENAPDVLSAVDPKGALEEMTEEV----GEAVVESLG 732
DGILEDSA+ +VGAVE+VANNEIVQN GEVVGDAVGVVHDALREGVKTG+E+VHGA RAMN+AGGV S GMPDIEGVEERAE YA+ METQAE AD AAEAFDRARENAPDVL AVDP G LEE+ EEV GEAVVE LG
Sbjct: 45 DGILEDSAKAIVGAVESVANNEIVQNAGEVVGDAVGVVHDALREGVKTGTEVVHGAVRAMNQAGGVASRGMPDIEGVEERAESYADLMETQAE-WADSAAEAFDRARENAPDVLRAVDPDGTLEEVVEEVTQEAGEAVVEILG 186
BLAST of mRNA_E-fasciculatus_F_contig11948.1521.1 vs. uniprot
Match: A0A6H5K751_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K751_9PHAE) HSP 1 Score: 109 bits (272), Expect = 4.970e-26 Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1
Query: 79 MDPTT-AKLAATAYKHRKDGQKFLTAVLETSTGVDVSVDSQELVGHVDDQFDSHAEGGKAIVEGFKKV 279
MDPTT AKLA TA KHRKDGQKFLTAVLETS G+DVSVDS+EL GHVD+ FD HAE GKAIVEGFK+
Sbjct: 1 MDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDSEELAGHVDEHFDGHAEAGKAIVEGFKRA 68 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11948.1521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11948.1521.1 >prot_E-fasciculatus_F_contig11948.1521.1 ID=prot_E-fasciculatus_F_contig11948.1521.1|Name=mRNA_E-fasciculatus_F_contig11948.1521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=388bp NARTRGENAPVPPFYCCVNERGSGDLMDPTTAKLAATAYKHRKDGQKFLTback to top mRNA from alignment at E-fasciculatus_F_contig11948:1436..3715+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11948.1521.1 ID=mRNA_E-fasciculatus_F_contig11948.1521.1|Name=mRNA_E-fasciculatus_F_contig11948.1521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2280bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11948:1436..3715+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11948:1436..3715+ >mRNA_E-fasciculatus_F_contig11948.1521.1 ID=mRNA_E-fasciculatus_F_contig11948.1521.1|Name=mRNA_E-fasciculatus_F_contig11948.1521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2328bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11948:1436..3715+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |