mRNA_E-fasciculatus_F_contig11947.1520.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11947.1520.1
Unique NamemRNA_E-fasciculatus_F_contig11947.1520.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: D8LIX7_ECTSI (Putative Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIX7_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.450e-31
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 RHVVHALLEGHEAAKSTGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAARQVRA 165
            RHVVHALLEGHEAAKSTGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAARQ+RA
Sbjct:   24 RHVVHALLEGHEAAKSTGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAARQLRA 78
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: I0YZ34_COCSC (Glutathione S-transferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZ34_COCSC)

HSP 1 Score: 63.5 bits (153), Expect = 2.310e-10
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 RHVVHALLEG-HEAAKSTGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAARQVRA 165
            RHV HALLEG H ++   G  +  P + V    EY+RDRVGVPRDLP+ AARQ+RA
Sbjct:  462 RHVAHALLEGAHASSLRVGDGENLPGDAVVASAEYIRDRVGVPRDLPYPAARQLRA 517
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: A0A0G4EGA8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EGA8_VITBC)

HSP 1 Score: 62.8 bits (151), Expect = 4.320e-10
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 RHVVHALLEGHEAAKSTGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAARQVRA 165
            RHV HALLEG +AA+  GLS  +P   V   L+YLR RVGVPRD+ + AARQ+RA
Sbjct:  437 RHVCHALLEGTDAAQQRGLSDLSP--PVNEALQYLRLRVGVPRDMTYPAARQLRA 489
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: A0A8J5XKW8_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKW8_DIALT)

HSP 1 Score: 62.0 bits (149), Expect = 8.070e-10
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 RHVVHALLEGHEAAKSTGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAARQVRA 165
            RHVVHAL+ G +AA++   S   P E V   L YLRDRVGVPRD+  AAARQ+RA
Sbjct:  432 RHVVHALIAGADAARAAPRSTLPPAE-VARSLSYLRDRVGVPRDMSLAAARQLRA 485
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: A0A8J9SKV1_9CHLO (Probable glutathione S-transferase DHAR2 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SKV1_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 2.810e-9
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 RHVVHALLEGHEAAK-STGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAARQVRA 165
            R+V HALLEG EA+    G  +++  + V    EYLRDRVGVPRDLP+ AARQ+RA
Sbjct:  393 RYVAHALLEGVEASGLQVGDGEKHSGDPVVASAEYLRDRVGVPRDLPYPAARQLRA 448
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: A0A7S4DCY0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCY0_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 1.960e-8
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    1 RHVVHALLEGHEAAKSTGLSQ------QNPVEQVQLCLEYLRDRVGVPRDLPFAAARQVRA 165
            RHV +ALLEG  A ++   +        +  + V  C  YLRDRVGVPRDLP  AARQ+RA
Sbjct:  196 RHVAYALLEGTSATENAAAADIASSCADDDAKAVAACAAYLRDRVGVPRDLPLPAARQLRA 256
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: A0A090N4W2_OSTTA (Glutathione S-transferase, N-terminal n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N4W2_OSTTA)

HSP 1 Score: 57.4 bits (137), Expect = 3.430e-8
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 RHVVHALLEGHEAAKSTGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAARQVRA 165
            RHV  AL++G         +  +  + V+ CLEYLRDRVGVPRD+ + AA Q+RA
Sbjct:  379 RHVAQALIDGSAGPTEPSSNMSSEAKAVRKCLEYLRDRVGVPRDMSYPAAMQLRA 433
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: A0A150GZ80_GONPE (GST N-terminal domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZ80_GONPE)

HSP 1 Score: 57.4 bits (137), Expect = 3.440e-8
Identity = 34/61 (55.74%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    1 RHVVHALLEGHEA------AKSTGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAARQVRA 165
            RHVVHALL G EA      A  T  S   P   V    EYLRDRVGVPRD+ + AARQ+RA
Sbjct:  399 RHVVHALLVGVEAKQVSPQALQTSSSAGLPGSAVVAAAEYLRDRVGVPRDMRYPAARQLRA 459
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: A0A2J8A835_9CHLO (GST N-terminal domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A835_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 4.690e-8
Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    1 RHVVHALLEGHEAAKSTGLSQQN------PVEQVQLCLEYLRDRVGVPRDLPFAAARQVRA 165
            RHV HALL G EA + +  + Q       P   V L  EYLRDRVGVPRD+ F AARQ+RA
Sbjct:  369 RHVAHALLAGVEAKQVSPQALQAAPAGALPGAAVVLAAEYLRDRVGVPRDMKFPAARQLRA 429
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BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Match: A0A7S2I958_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2I958_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.650e-7
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 RHVVHALLEGHEAA---KSTGLSQQNPVEQVQL--CLEYLRDRVGVPRDLPFAAARQVRA 165
            RHV  ALLEG EAA    +  L+    V+  QL  CL YLRDRVGVPRD+  AAAR +RA
Sbjct:  437 RHVAVALLEGTEAALPAATADLAAMGRVDAPQLVACLSYLRDRVGVPRDMGQAAARALRA 496
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11947.1520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIX7_ECTSI3.450e-3198.18Putative Glutathione S-transferase n=1 Tax=Ectocar... [more]
I0YZ34_COCSC2.310e-1057.14Glutathione S-transferase n=1 Tax=Coccomyxa subell... [more]
A0A0G4EGA8_VITBC4.320e-1060.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A8J5XKW8_DIALT8.070e-1060.00Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8J9SKV1_9CHLO2.810e-957.14Probable glutathione S-transferase DHAR2 at N-term... [more]
A0A7S4DCY0_HETAK1.960e-849.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A090N4W2_OSTTA3.430e-847.27Glutathione S-transferase, N-terminal n=2 Tax=Ostr... [more]
A0A150GZ80_GONPE3.440e-855.74GST N-terminal domain-containing protein n=1 Tax=G... [more]
A0A2J8A835_9CHLO4.690e-854.10GST N-terminal domain-containing protein n=1 Tax=T... [more]
A0A7S2I958_9EUKA1.650e-756.67Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11947contigE-fasciculatus_F_contig11947:3153..4182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue6e-08
Seed eggNOG ortholog248742.XP_005648197.1
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
EggNOG free text desc.glutathione S-transferase
EggNOG OGs34IZ3@3041,37RH5@33090,KOG1422@1,KOG1422@2759
EC2.5.1.18
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionputative Glutathione S-transferase
Ec32 orthologEc-20_001950.1
Exons2
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927704.2891545-CDS-E-fasciculatus_F_contig11947:3152..32331622927704.2891545-CDS-E-fasciculatus_F_contig11947:3152..3233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11947 3153..3233 +
1695995657.9856558-CDS-E-fasciculatus_F_contig11947:3152..32331695995657.9856558-CDS-E-fasciculatus_F_contig11947:3152..3233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11947 3153..3233 +
1622927704.3047647-CDS-E-fasciculatus_F_contig11947:4095..41821622927704.3047647-CDS-E-fasciculatus_F_contig11947:4095..4182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11947 4096..4182 +
1695995657.9960208-CDS-E-fasciculatus_F_contig11947:4095..41821695995657.9960208-CDS-E-fasciculatus_F_contig11947:4095..4182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11947 4096..4182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11947.1520.1prot_E-fasciculatus_F_contig11947.1520.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11947 3153..4182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11947.1520.1

>prot_E-fasciculatus_F_contig11947.1520.1 ID=prot_E-fasciculatus_F_contig11947.1520.1|Name=mRNA_E-fasciculatus_F_contig11947.1520.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=56bp
RHVVHALLEGHEAAKSTGLSQQNPVEQVQLCLEYLRDRVGVPRDLPFAAA
RQVRA*
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mRNA from alignment at E-fasciculatus_F_contig11947:3153..4182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11947.1520.1 ID=mRNA_E-fasciculatus_F_contig11947.1520.1|Name=mRNA_E-fasciculatus_F_contig11947.1520.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1030bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11947:3153..4182+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCACGTGGTTCACGCCCTCCTAGAGGGGCACGAGGCGGCCAAGTCTAC
GGGACTTTCACAGCAGAACCCGGTCGAGCAGGTGCGTGCTTGATTGGACA
GTGGAAACCCACCTTCCAAAAGAACTTCATGATGAAACACCGAAAAACGT
GGAATATTCACAACCCTTTCGAGCATTATCATCGCACCCGCCGATGCGGA
AATCTGCAGTTATCATTCGCCTGCTGTGTATCGGGACTCGAGTCCGGAGG
TCTCTGATAGCTGTTTGATGCGAAGGGAGGTTCGGTCGGACTAATATTGC
CGAAAGGGCCGGCTGACAAGGACAGGCCTGTAGCAGTGCAAAATCGCATC
CGTGCGTGATGGGTGTAACTCGGTTTTCTCTTCCGCTGGCGTGTGGAGAG
GAATGTCAAGCGTGACCTACTACAGTACTCGGACAAGCAAAGTAGGTGAC
GATAGGGGTCAGTCTGAGAGTGCGCCTTTGTGGGGGACACCAGTCCAACT
TCCCAGATTCACCGAAAAAACCGCGTCATTGAGAGGATCGCTTCTTCGTG
TTCCATCGTGGGGCCGCTGGTAACGTGTCTGACAGCAGTCCGAACAGGGT
ATTTGTGTCGAACGTGTAGTCTTTCTCTGATGTTACGTTTGTTTTCTTAG
GGGTCAAGGTCTCCACCGTGTGTTGCATGCAATCAACGATGTTTGTTTTT
GCTTATACCGTGGCCTCTTATGTTCATGGCAATTTGCTCTGCCCAGTGCG
ATTTAACGGTATGCCACCGCAGTGTTGTCCGCATGACTGCACGACAAGCG
AACGGCGCAGCAGCAAGCACTACGTGTTGGTCTCATGCTCCTCGTCGGCT
ATCTACACCACACGCGCGTGGGAGTTGGTCGCCGGCGCTTAATCGTCTGG
TCGCTCTCTTGCGTCATGTCGCCCACGGTGTTTTCCCCGGCAGGTGCAAC
TGTGTCTCGAGTATCTGAGGGACAGGGTCGGCGTGCCTCGCGACCTCCCG
TTCGCAGCAGCAAGACAGGTGAGGGCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11947:3153..4182+

>mRNA_E-fasciculatus_F_contig11947.1520.1 ID=mRNA_E-fasciculatus_F_contig11947.1520.1|Name=mRNA_E-fasciculatus_F_contig11947.1520.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11947:3153..4182+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCACGTGGTTCACGCCCTCCTAGAGGGGCACGAGGCGGCCAAGTCTAC
GGGACTTTCACAGCAGAACCCGGTCGAGCAGAGGCACGTGGTTCACGCCC
TCCTAGAGGGGCACGAGGCGGCCAAGTCTACGGGACTTTCACAGCAGAAC
CCGGTCGAGCAGGTGCAACTGTGTCTCGAGTATCTGAGGGACAGGGTCGG
CGTGCCTCGCGACCTCCCGTTCGCAGCAGCAAGACAGGTGAGGGCATGAG
TGCAACTGTGTCTCGAGTATCTGAGGGACAGGGTCGGCGTGCCTCGCGAC
CTCCCGTTCGCAGCAGCAAGACAGGTGAGGGCATGA
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