mRNA_E-fasciculatus_F_contig1194.1515.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1194.1515.1
Unique NamemRNA_E-fasciculatus_F_contig1194.1515.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1194.1515.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 5.510e-33
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = -2 
Query:    3 MDNDFVDVFPSAGGVGDSPVKTSATEEHLNPAGSSWSRPGLSLSIPADTGGREALVSPAVPGSRRAS 203
            MDNDFVDVFPSAGGVGDSPVKTSA EEHLNPAGSSWSRPGLSLSIPADTGGREALVSPAVPGSRRAS
Sbjct:    1 MDNDFVDVFPSAGGVGDSPVKTSAAEEHLNPAGSSWSRPGLSLSIPADTGGREALVSPAVPGSRRAS 67
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1194.1515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2L8_9PHAE5.510e-3398.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1194contigE-fasciculatus_F_contig1194:13494..13724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_010340.1
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927703.9143-CDS-E-fasciculatus_F_contig1194:13493..137241622927703.9143-CDS-E-fasciculatus_F_contig1194:13493..13724Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1194 13494..13724 -
1695995657.8104062-CDS-E-fasciculatus_F_contig1194:13493..137241695995657.8104062-CDS-E-fasciculatus_F_contig1194:13493..13724Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1194 13494..13724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1194.1515.1prot_E-fasciculatus_F_contig1194.1515.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1194 13494..13724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1194.1515.1

>prot_E-fasciculatus_F_contig1194.1515.1 ID=prot_E-fasciculatus_F_contig1194.1515.1|Name=mRNA_E-fasciculatus_F_contig1194.1515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
MDARLEPGTAGDTRASLPPVSAGIESDSPGRDHELPAGLRCSSVALVLTG
LSPTPPAEGNTSTKSLSMLLQQARGSG
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mRNA from alignment at E-fasciculatus_F_contig1194:13494..13724-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1194.1515.1 ID=mRNA_E-fasciculatus_F_contig1194.1515.1|Name=mRNA_E-fasciculatus_F_contig1194.1515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=231bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1194:13494..13724- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGCCCGCCTGGAGCCGGGGACCGCCGGGGATACGAGGGCCTCCCT
GCCTCCTGTATCAGCGGGGATCGAGAGCGATAGCCCGGGGCGAGACCACG
AACTTCCTGCTGGGTTGAGGTGCTCCTCCGTAGCGCTCGTCTTGACGGGG
CTGTCGCCGACGCCTCCCGCGGAGGGGAACACGTCCACGAAGTCGTTGTC
CATGCTGCTGCAGCAGGCAAGGGGATCCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1194:13494..13724-

>mRNA_E-fasciculatus_F_contig1194.1515.1 ID=mRNA_E-fasciculatus_F_contig1194.1515.1|Name=mRNA_E-fasciculatus_F_contig1194.1515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1194:13494..13724- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGCCCGCCTGGAGCCGGGGACCGCCGGGGATACGAGGGCCTCCCT
GCCTCCTGTATCAGCGGGGATCGAGAGCGATAGCCCGGGGCGAGACCACG
AACTTCCTGCTGGGTTGAGGTGCTCCTCCGTAGCGCTCGTCTTGACGGGG
CTGTCGCCGACGCCTCCCGCGGAGGGGAACACGTCCACGAAGTCGTTGTC
CATGCTGCTGCAGCAGGCAAGGGGATCCGGGATGGACGCCCGCCTGGAGC
CGGGGACCGCCGGGGATACGAGGGCCTCCCTGCCTCCTGTATCAGCGGGG
ATCGAGAGCGATAGCCCGGGGCGAGACCACGAACTTCCTGCTGGGTTGAG
GTGCTCCTCCGTAGCGCTCGTCTTGACGGGGCTGTCGCCGACGCCTCCCG
CGGAGGGGAACACGTCCACGAAGTCGTTGTCCATGCTGCTGCAGCAGGCA
AGGGGATCCGGG
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