mRNA_E-fasciculatus_F_contig11933.1511.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11933.1511.1
Unique NamemRNA_E-fasciculatus_F_contig11933.1511.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: A0A6H5JP10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP10_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 1.950e-134
Identity = 202/206 (98.06%), Postives = 206/206 (100.00%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALEA 618
            GRSICGGWAVEILG+TVPELIRRSLIFS+LDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDAT+AIPFTSPPSLEK+FTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALEA
Sbjct:  298 GRSICGGWAVEILGQTVPELIRRSLIFSNLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATKAIPFTSPPSLEKTFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALEA 503
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BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: D7FUV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV5_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 1.190e-99
Identity = 155/170 (91.18%), Postives = 162/170 (95.29%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDIT 510
            GRSICGGWAVEILG+TVPELIRRSLIFS+LDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDAT+AIPFTSPPSLEK+FTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVK  +  GR   C++ T
Sbjct:  232 GRSICGGWAVEILGQTVPELIRRSLIFSNLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATKAIPFTSPPSLEKTFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKAISY-GRSAFCLEPT 400
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BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: K8ZC40_NANGC (Abc transporter atpase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZC40_NANGC)

HSP 1 Score: 268 bits (686), Expect = 7.170e-87
Identity = 137/205 (66.83%), Postives = 162/205 (79.02%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALE 615
            GRSI G W  +IL + +P+L+ RSL+FSSLD   LR H+LS EDQE LR  L + G+VGF+ NGA+LPR+SG+ D PMDA  A+PF SP +LE+  TLPN G V GMGIP G+TLIVGGGFHGKST+  AL++G +NHIPGDGREFV V+ SAVKVRAEDGR V  V+ITPFIDNLPFGK TD F T DASGSTSQA +I+EALE
Sbjct:   97 GRSIEGLWCSKILLERLPDLVARSLLFSSLDAAHLRAHILSVEDQEVLRSLLPSAGLVGFIRNGALLPRKSGHVDLPMDAATALPFQSPHTLEREVTLPNAGRVKGMGIPKGITLIVGGGFHGKSTLLQALELGIHNHIPGDGREFVCVDPSAVKVRAEDGRAVTEVNITPFIDNLPFGKRTDSFCTADASGSTSQAASIIEALE 301
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BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: A0A835YTL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL6_9STRA)

HSP 1 Score: 276 bits (706), Expect = 1.440e-85
Identity = 144/222 (64.86%), Postives = 168/222 (75.68%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRS----------------LIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALEA 618
            GR+ICG WA EILG TVP+L+  S                L +S+LD  ALR+H++SAEDQEALR ++ A G VGFV NGA+LPRESGNSDRPM+    + F SPP LE S+ LP+   VTGM IPPGVTL+VGGGFHGKST+  AL+VG YNHIPGDGREFV+V + AVKVRAEDGR V  VDI+PFIDNLPFG+ST  FTT DASGSTSQA +I+EALEA
Sbjct:  221 GRTICGTWAAEILGATVPKLVAASVMEMREATAPKLGAASLCYSALDAAALREHIVSAEDQEALRSAVTAKGDVGFVANGAVLPRESGNSDRPMEGASVVRFQSPPELEVSYALPSGRAVTGMRIPPGVTLVVGGGFHGKSTLLQALEVGVYNHIPGDGREFVTVRSGAVKVRAEDGRSVCGVDISPFIDNLPFGRSTGAFTTADASGSTSQAASIMEALEA 442
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BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: A0A4D9CW80_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW80_9STRA)

HSP 1 Score: 272 bits (695), Expect = 5.590e-84
Identity = 137/205 (66.83%), Postives = 164/205 (80.00%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALE 615
            GRSI G W  +IL + +P+L+ RSL+FSSLD   LR H+LS EDQE LR  L + G+VGF+ NGA+LPR+SG+ D+PMDA  A+PF SPP+LE+  TLPN G + GMGIP G+TLIVGGGFHGKST+  AL++G +NHIPGDGREFV V+ SAVKVRAEDGR V  V+ITPFIDNLPFGK TD F T DASGSTSQA +I+EALE
Sbjct:  207 GRSIEGLWCSKILLERLPDLVARSLLFSSLDAAHLRAHILSVEDQEVLRSLLPSAGLVGFIRNGALLPRKSGHVDQPMDAATALPFQSPPTLEREVTLPNAGKMKGMGIPKGITLIVGGGFHGKSTLLQALELGIHNHIPGDGREFVCVDPSAVKVRAEDGRAVTEVNITPFIDNLPFGKRTDSFCTADASGSTSQAASIIEALE 411
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: A0A7S2RPK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPK6_9STRA)

HSP 1 Score: 261 bits (666), Expect = 6.910e-83
Identity = 134/206 (65.05%), Postives = 160/206 (77.67%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALEA 618
            GR+I G WA +IL   +P L++RSL+ +SLD  A+R HVLS EDQEALR  L   G+V FV NGA+LPR+SG SD PM     + F SPPS E+SFTLPN+G ++GMGIP GV+LIVGGGFHGKST+  ALQVG YNH+PGDGREF  V  +AVKVRAEDGR V+ VDI+PFI+NLPFGK T  F+T DASGSTSQA +I+EA EA
Sbjct:  195 GRTIEGRWANDILTSKLPLLVQRSLLAASLDIAAVRAHVLSVEDQEALRSMLAERGLVAFVANGAVLPRQSGASDTPMGGAGIVAFASPPSFEQSFTLPNKGPISGMGIPRGVSLIVGGGFHGKSTLLQALQVGVYNHVPGDGREFTCVNPTAVKVRAEDGRSVSSVDISPFINNLPFGKDTTCFSTLDASGSTSQAASIIEAFEA 400
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BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: A0A662WDZ6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDZ6_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.100e-81
Identity = 130/205 (63.41%), Postives = 159/205 (77.56%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALE 615
            GRSICG WA  IL  T+P L++RSL+ SSLD   L  H+   EDQE LRG L+  G+VGF+ +GA+LPRESG SDRP+ + +AIPF SP +L +SFTLPN G +TGMGIP GVTL VGGGFHGK+T+  AL+VG YNH+P DGREFV ++ +AVK+R+ED R V C DI+ FIDNLPF + T +F+T DASGSTSQA NIVEALE
Sbjct:  207 GRSICGDWAYTILVDTLPRLVQRSLVLSSLDVSHLWTHLQCVEDQETLRGMLKDAGLVGFIRDGAVLPRESGASDRPLSSDKAIPFQSPKTLRQSFTLPNCGELTGMGIPTGVTLFVGGGFHGKTTVLKALEVGVYNHVPSDGREFVVMDPNAVKIRSEDSRSVTCTDISAFIDNLPFKQDTTRFSTADASGSTSQAANIVEALE 411
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: A0A2D4BNI8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNI8_PYTIN)

HSP 1 Score: 263 bits (671), Expect = 2.710e-81
Identity = 134/205 (65.37%), Postives = 157/205 (76.59%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALE 615
            GRSICG WA  IL   +P L+  +L+F+SL+   L  HV S EDQEALRG L   G+VGFV NGAILPRESG SDRP+   +A+ F SPPSLE+SF LPN G + GMG+P GVTL VGGGFHGK+TI  AL+VG YNHIPGDGREFV ++A+AVK+RAED R V   DI+ FIDNLPF + T +FTT DASGSTSQA NI+EALE
Sbjct:  203 GRSICGNWACTILVDVLPRLVAEALVFTSLNEAHLWSHVHSVEDQEALRGMLSTAGLVGFVRNGAILPRESGASDRPLGKDKAVLFQSPPSLERSFQLPNAGEIKGMGVPAGVTLFVGGGFHGKTTILKALEVGVYNHIPGDGREFVVMDANAVKIRAEDSRSVVSCDISAFIDNLPFXQDTTKFTTADASGSTSQAANIIEALE 407
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BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: W2RH17_PHYPN (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2RH17_PHYPN)

HSP 1 Score: 261 bits (667), Expect = 1.020e-80
Identity = 128/205 (62.44%), Postives = 160/205 (78.05%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALE 615
            GRSICG WA  IL +T+P+L+ +SL+  SLD   + QH+ S EDQEALRG L+  G+VGFV +GA+LPR+SG SD P+ + +AIPF SP SL ++FTLPN G +TGMGIP GVTL VGGGFHGKST+  AL+VG YNH+P DGREFV ++ +A K+R+ED R V C DI+ FIDNLPF + T +F+T DASGSTSQA NI+EALE
Sbjct:  202 GRSICGDWAYTILVETLPKLVEQSLVLKSLDKNHIWQHLHSVEDQEALRGMLKDAGLVGFVRDGAVLPRQSGASDLPLSSDKAIPFKSPKSLSRTFTLPNYGVITGMGIPQGVTLFVGGGFHGKSTVLKALEVGVYNHVPSDGREFVVMDPNAAKIRSEDSRSVVCTDISAFIDNLPFKQDTTRFSTADASGSTSQAANIIEALE 406
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Match: W2RHK1_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=W2RHK1_PHYPN)

HSP 1 Score: 261 bits (667), Expect = 1.040e-80
Identity = 128/205 (62.44%), Postives = 160/205 (78.05%), Query Frame = 1 
Query:    1 GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRGSLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPNRGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVEASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNIVEALE 615
            GRSICG WA  IL +T+P+L+ +SL+  SLD   + QH+ S EDQEALRG L+  G+VGFV +GA+LPR+SG SD P+ + +AIPF SP SL ++FTLPN G +TGMGIP GVTL VGGGFHGKST+  AL+VG YNH+P DGREFV ++ +A K+R+ED R V C DI+ FIDNLPF + T +F+T DASGSTSQA NI+EALE
Sbjct:  202 GRSICGDWAYTILVETLPKLVEQSLVLKSLDKNHIWQHLHSVEDQEALRGMLKDAGLVGFVRDGAVLPRQSGASDLPLSSDKAIPFKSPKSLSRTFTLPNYGVITGMGIPQGVTLFVGGGFHGKSTVLKALEVGVYNHVPSDGREFVVMDPNAAKIRSEDSRSVVCTDISAFIDNLPFKQDTTRFSTADASGSTSQAANIIEALE 406
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11933.1511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP10_9PHAE1.950e-13498.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUV5_ECTSI1.190e-9991.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8ZC40_NANGC7.170e-8766.83Abc transporter atpase (Fragment) n=1 Tax=Nannochl... [more]
A0A835YTL6_9STRA1.440e-8564.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CW80_9STRA5.590e-8466.83Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2RPK6_9STRA6.910e-8365.05Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A662WDZ6_9STRA1.100e-8163.41Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A2D4BNI8_PYTIN2.710e-8165.37Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W2RH17_PHYPN1.020e-8062.44Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
W2RHK1_PHYPN1.040e-8062.44Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11933contigE-fasciculatus_F_contig11933:153..3485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.8
Seed ortholog evalue1.5e-80
Seed eggNOG ortholog2880.D7FUV5
EggNOG free text desc.Predicted ATPase of the ABC class
EggNOG OGs2QT9W@2759,COG3044@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size618
Cds size618
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11933.1511.1prot_E-fasciculatus_F_contig11933.1511.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11933 153..3485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927703.5912285-CDS-E-fasciculatus_F_contig11933:152..2871622927703.5912285-CDS-E-fasciculatus_F_contig11933:152..287Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 153..287 +
1695995657.632394-CDS-E-fasciculatus_F_contig11933:152..2871695995657.632394-CDS-E-fasciculatus_F_contig11933:152..287Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 153..287 +
1622927703.6022666-CDS-E-fasciculatus_F_contig11933:699..8101622927703.6022666-CDS-E-fasciculatus_F_contig11933:699..810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 700..810 +
1695995657.6476665-CDS-E-fasciculatus_F_contig11933:699..8101695995657.6476665-CDS-E-fasciculatus_F_contig11933:699..810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 700..810 +
1622927703.6163735-CDS-E-fasciculatus_F_contig11933:1629..17421622927703.6163735-CDS-E-fasciculatus_F_contig11933:1629..1742Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 1630..1742 +
1695995657.6555748-CDS-E-fasciculatus_F_contig11933:1629..17421695995657.6555748-CDS-E-fasciculatus_F_contig11933:1629..1742Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 1630..1742 +
1622927703.6268754-CDS-E-fasciculatus_F_contig11933:2641..27471622927703.6268754-CDS-E-fasciculatus_F_contig11933:2641..2747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 2642..2747 +
1695995657.6635928-CDS-E-fasciculatus_F_contig11933:2641..27471695995657.6635928-CDS-E-fasciculatus_F_contig11933:2641..2747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 2642..2747 +
1622927703.6411614-CDS-E-fasciculatus_F_contig11933:3332..34851622927703.6411614-CDS-E-fasciculatus_F_contig11933:3332..3485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 3333..3485 +
1695995657.6719189-CDS-E-fasciculatus_F_contig11933:3332..34851695995657.6719189-CDS-E-fasciculatus_F_contig11933:3332..3485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11933 3333..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11933.1511.1

>prot_E-fasciculatus_F_contig11933.1511.1 ID=prot_E-fasciculatus_F_contig11933.1511.1|Name=mRNA_E-fasciculatus_F_contig11933.1511.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=206bp
GRSICGGWAVEILGKTVPELIRRSLIFSSLDGEALRQHVLSAEDQEALRG
SLRAGGVVGFVINGAILPRESGNSDRPMDATQAIPFTSPPSLEKSFTLPN
RGTVTGMGIPPGVTLIVGGGFHGKSTIEVALQVGCYNHIPGDGREFVSVE
ASAVKVRAEDGRCVNCVDITPFIDNLPFGKSTDQFTTPDASGSTSQATNI
VEALEA
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mRNA from alignment at E-fasciculatus_F_contig11933:153..3485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11933.1511.1 ID=mRNA_E-fasciculatus_F_contig11933.1511.1|Name=mRNA_E-fasciculatus_F_contig11933.1511.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11933:153..3485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAGGTCGATCTGCGGGGGTTGGGCAGTGGAAATCCTCGGTAAGACGGT
GCCTGAGCTCATCCGGAGGAGTCTCATCTTCTCCAGCCTGGATGGTGAAG
CCCTTAGGCAGCACGTGCTCTCTGCCGAGGACCAGGTGAGGCGTTTTATT
GTGCTTTGTTGCCGTTGGTGGTGGTGGTTCTTGTTGTTCGTGTTGTGTTA
GTGGAAGTAGTAGTGGTGATGGTGATGCTTTTTTTGTTGCTGGTACAATA
GCAAGTGATGGTGTGTTGTTGTTGTTAGTGGTGGAGTGGTGGTGGTAGTG
ATACTGCTGTAGTGGTTATGTTTTTGTCGGTGTTGCTGCGGTCGCTGTTG
CTGCTGCTGCCGCTGCTGCCGTATTGCTGTCGCCGTCGCCGTTGTTCCCA
CGGTTGCCCCCCCCGCCGCCGTTCCCCTACCAAAATGGCGCCCGTTGCAT
CCCCGCTGCTGCCACGACGACTTGACAACTAATGTAACTAATGTACCACC
TGCTATTTGTGCCGGCGTGCACACCCTGCTATTCGGTCTGGTCTCAGGAA
GCGCTCCGTGGGTCCCTTCGCGCGGGCGGCGTGGTGGGCTTCGTGATCAA
CGGCGCCATCCTGCCGAGAGAGAGCGGCAACAGCGACCGACCCATGGACG
CCACCCAGGTAGGGTATGGTGTCTACGAAACTGTGTATATGCATTACCAA
ACATTATTCACGGAAATATATCTATGAAATAGTGACTACGTAACGATATC
TACGGCAACGGTATCTACGACACGGTGGTCTACGACAAACTATCTTCGAA
ACGGTATCGGCACCGCGCGACGAAAAACAGGCTTTTGATTTGGTGACGTT
GCTTTTTCCTCGGTTTGCTCAGACGACTGCTTCGTTTTGGCTGATGGGGT
GAAACGAGAAGGCTGATTCGTTGTGTGTGTAGTTTTTGTTGATTTGGTTC
GGGTGCCGTGGCGGGTAGGCGCGACACTGTATCGTTGTGGAGCCACGCGG
TCACACGGTACCACCCCATCTTCCCGGCAGTTTCATTTTTTCGTGTCGTG
TTTTTCCTCTTGCAGAATTTTTTCTTCAAGGTCGATTTCACAGAAAGGCA
GGCGTCTAGCGGGTATGCAATGGTGTATATACAGCAGTAGGACGCCCTCG
AGTGTTTTCTGCCGGTAATGCCGTATCGCACACATACGGTACGGTACAGC
AGCAGTTGTCCGCTACACTCCTCGGAACGGGGGCGGGCCCTAAATACACG
GTAGCCAGAACTCTTTGTACACACAAGATGAGATGCGCCATGGCCCACGG
GGCCCCAGACCATGGTAGCCTTTAGAAGGACTTTCCATTTTTTTTTTTGC
TGCACTGAGATGAATGACACTGACGTCTCATCATTGGCATCATCAGTCGG
TTAGCGCTGTCGATGCTAACAAACACACGACACACACACGCGCGCTCCCC
ACGGGCGCTGCTTAAAATATTTCGCAGGCGATCCCGTTCACCAGCCCTCC
CTCCCTGGAGAAAAGCTTCACGCTGCCCAACAGGGGCACCGTGACGGGGA
TGGGCATACCCCCCGGGGTGACTCTCATCGTCGGCGGAGGGTGAGCTCGA
AAATGTACCCCTTCGTTCTTCTCCTTCTTGATTTCTGTTTCATGTTCGCT
CCGGTGTACGAAGGGTGTCGGGACAAACCAAAACACATTGTAGTATACGC
CGTTCTTTTTTCTTTTCCTTTTTTCTTCATCACATTAAACCAGAACTAAC
TCTTACTGAACTCTCTTTTATCGTTTTGTTGGTATATATTTTTCTTACCT
ATTAAATAAACTAACGATTTTATCTCTTATCCATTTTTTTGCTTCTAAAA
CTAGTGCTGTACCACTTGCAATGTGTGCATTTGTCACACCCGGCAAAGGC
AAAGGCCCCACCTCTGTCGCTTTGTTGGTAGTCCCTTTACTCTTACAGTT
ACCGCTACTTCTGTAGCAGTACATTTTCGGCTATTTTTTATCTTTTCCGC
CCACGTGAATTGTGAAGTCCACCTCTACTCCTCTTCGAGAGTAGGGTCAT
GCCGTAGGTGTTTCACGGTTGTACCGTGGGTGTTTCGCGGTATGTACCGA
GCGAAAGACCTTTGGGGTTGGAGGTGTTCACATACTGGGTTGCAACAATA
CTTTTGATTTCAACACACGTCCAACGTACTGTACCCTTCTCAAGACCGAG
GGTAGTTCTCGCTTCATTCATCTTGCGTTGCCCCTGAAATCATTCGCCTT
CTGTAGGGGGGGGTGGGGGGGGGAGGTTCGCAGCTTCTGCCCTCAGCACT
TCAGGAGGTCGTACTGGTACTCGCACAGAAGATAGGATACGGTATTCTCA
AGCTTTTCTCTTTGGTGGTCTTTGTGAAAAGACGGAATCGTCCTCCTCGC
TAGACGTTGAGAAATTGTACCCTTTTATGAAGGAAGATGATGATGATCGT
CACATGTCGTTTTTTTGTTTTTTCTTTCCCTCGACCCAGGTTCCACGGCA
AGAGCACGATAGAAGTCGCCCTGCAGGTGGGGTGCTACAACCACATCCCA
GGAGACGGCCGGGAGTTCGTTTCTGTGGAGGCCAGCGCGGTGAAGGTGAA
CAACGCCTCCTCTCATAACTTTGTATGATGATTGTCTTTAAAGTATTTTC
ATGAAGAGTGTGATAACCCGAAACGCCTCGTCTCACATTGTGGTATTTTA
TATTCTTCGGGGTATTTTTCATGAAGAAGGTGACGAACCGAAACGCCCAC
CCTCGCAAACGCTATTTGATACTCCGTAGTGTTGGGGGAATTTTTCATGA
AGAATGTGATAACCCGAAACGCCACCACGCGCGCACGCTCGTGCGTAAGC
CTTTGCGCGCATCTCGTCGTCGTCTTCGTTATTGTTGTTGTTGTTGCTGT
TGCTGTTGTTGCTGACGGCGGTGATTGTGGTCTTGTCGTCTATCTCTGCC
TTGACGCTAAACGCCGTTTTGATGTCTACGCGATACCTCCCCTTCCGCGC
TGAATCCACCCTGTGAGGGACAGAATAAGGTACAAACGCATGAGATGTCA
GCAATCCTTGTTTGTGCTATAGTCTATTCTTGTAGCCGTTCAGCCGTTCT
TGTCATCTTGCCCCCGCCGTTTTGTCCTAAGGCACTCTCATCAATGTTGG
CGTGTGCGTTTCTGTATTCCTTTTTTGCAGGTGAGAGCGGAAGACGGCCG
GTGCGTGAACTGCGTGGACATCACCCCCTTCATTGACAACCTGCCCTTTG
GCAAGTCCACCGACCAGTTCACCACCCCGGACGCCTCGGGGTCAACGAGC
CAGGCCACCAATATCGTCGAGGCCCTCGAAGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11933:153..3485+

>mRNA_E-fasciculatus_F_contig11933.1511.1 ID=mRNA_E-fasciculatus_F_contig11933.1511.1|Name=mRNA_E-fasciculatus_F_contig11933.1511.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1236bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11933:153..3485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAGGTCGATCTGCGGGGGTTGGGCAGTGGAAATCCTCGGTAAGACGGT
GCCTGAGCTCATCCGGAGGAGTCTCATCTTCTCCAGCCTGGATGGTGAAG
CCCTTAGGCAGCACGTGCTCTCTGCCGAGGACCAGGGGAGGTCGATCTGC
GGGGGTTGGGCAGTGGAAATCCTCGGTAAGACGGTGCCTGAGCTCATCCG
GAGGAGTCTCATCTTCTCCAGCCTGGATGGTGAAGCCCTTAGGCAGCACG
TGCTCTCTGCCGAGGACCAGGAAGCGCTCCGTGGGTCCCTTCGCGCGGGC
GGCGTGGTGGGCTTCGTGATCAACGGCGCCATCCTGCCGAGAGAGAGCGG
CAACAGCGACCGACCCATGGACGCCACCCAGGAAGCGCTCCGTGGGTCCC
TTCGCGCGGGCGGCGTGGTGGGCTTCGTGATCAACGGCGCCATCCTGCCG
AGAGAGAGCGGCAACAGCGACCGACCCATGGACGCCACCCAGGCGATCCC
GTTCACCAGCCCTCCCTCCCTGGAGAAAAGCTTCACGCTGCCCAACAGGG
GCACCGTGACGGGGATGGGCATACCCCCCGGGGTGACTCTCATCGTCGGC
GGAGGGCGATCCCGTTCACCAGCCCTCCCTCCCTGGAGAAAAGCTTCACG
CTGCCCAACAGGGGCACCGTGACGGGGATGGGCATACCCCCCGGGGTGAC
TCTCATCGTCGGCGGAGGGTTCCACGGCAAGAGCACGATAGAAGTCGCCC
TGCAGGTGGGGTGCTACAACCACATCCCAGGAGACGGCCGGGAGTTCGTT
TCTGTGGAGGCCAGCGCGGTGAAGGTTCCACGGCAAGAGCACGATAGAAG
TCGCCCTGCAGGTGGGGTGCTACAACCACATCCCAGGAGACGGCCGGGAG
TTCGTTTCTGTGGAGGCCAGCGCGGTGAAGGTGAGAGCGGAAGACGGCCG
GTGCGTGAACTGCGTGGACATCACCCCCTTCATTGACAACCTGCCCTTTG
GCAAGTCCACCGACCAGTTCACCACCCCGGACGCCTCGGGGTCAACGAGC
CAGGCCACCAATATCGTCGAGGCCCTCGAAGCGGTGAGAGCGGAAGACGG
CCGGTGCGTGAACTGCGTGGACATCACCCCCTTCATTGACAACCTGCCCT
TTGGCAAGTCCACCGACCAGTTCACCACCCCGGACGCCTCGGGGTCAACG
AGCCAGGCCACCAATATCGTCGAGGCCCTCGAAGCG
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