mRNA_E-fasciculatus_F_contig11932.1510.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11932.1510.1
Unique NamemRNA_E-fasciculatus_F_contig11932.1510.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11932.1510.1 vs. uniprot
Match: A0A6H5JJD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD0_9PHAE)

HSP 1 Score: 447 bits (1149), Expect = 2.440e-141
Identity = 239/270 (88.52%), Postives = 247/270 (91.48%), Query Frame = 1 
Query:   85 MRVSRARRHRQRSALLRACMVVISLLADVELTLADEAAGLEPSMLSPLAQLTLIDAQVERDDMYYFQVLTEAWQSTRVRVSIEDCTPRTALIAAFGAEPTPSRHELLAHAMPDLAGNGTCGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGPPDTLAFQAAVIAESAVYPTLDRGVAASGDCLRKVAVPPVVVPTITGPPGXXXXXXXXXXXQGSSGSFLPTLGRFPAGGAAEKTEGKDRGGGQGEEDDARHDAA-TALLLSPSWLG 891
            M  S ARR RQ SALL+AC+V  SLLA VE T+ADEAAGLEPSMLSPLAQLTLIDAQVERDD++YFQVLTEAWQSTRVRVSIEDCTPRTA+IAAFGAEPTPSRHELLAHAMPDLAGNGTCGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGPPDTLAFQAAVIA+SAVYPTLDRGVAASGDCLRKVAVPPVVVPTITGPPG         X QGS GSFLPTLGRFPAGGAAEKTEGKDRGGG GEE+DARH AA TALLLSPSWLG
Sbjct:    1 MVASGARRCRQGSALLKACLVS-SLLA-VEPTVADEAAGLEPSMLSPLAQLTLIDAQVERDDIHYFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAMPDLAGNGTCGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGPPDTLAFQAAVIADSAVYPTLDRGVAASGDCLRKVAVPPVVVPTITGPPGSSVSRRGGGXGQGSRGSFLPTLGRFPAGGAAEKTEGKDRGGGDGEEEDARHAAAATALLLSPSWLG 268
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BLAST of mRNA_E-fasciculatus_F_contig11932.1510.1 vs. uniprot
Match: D8LS69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS69_ECTSI)

HSP 1 Score: 390 bits (1002), Expect = 6.160e-135
Identity = 206/228 (90.35%), Postives = 210/228 (92.11%), Query Frame = 1 
Query:   94 SRARRHRQRSALLRACMVVISLLADVELTLADEAAGLEPSMLSPLAQLTLIDAQVERDDMYYFQVLTEAWQSTRVRVSIEDCTPRTALIAAFGAEPTPSRHELLAHAMPDLAGNGTCGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGPPDTLAFQAAVIAESAVYPTLDRGVAASGDCLRKVAVPPVVVPTITGPPGXXXXXXXXXXXQGSSGSFLPTLGRFPA 777
            SRARR R RSALLRAC+V  SLLA VELTLADEAAGLEPSMLSPLAQLTLIDAQVERDDMYYFQVLTEAWQSTRVRVSIEDCTPRTA+IAAFGAEPTPSRHELLAHAMPD+AGNGTCGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGP DTLAFQAAVIA+SAVYPTLDRGVAASGDCLRKVAVPPVVVPTITGPPG           QGS GSFLPTLGRFPA
Sbjct:    4 SRARRCRLRSALLRACLVS-SLLA-VELTLADEAAGLEPSMLSPLAQLTLIDAQVERDDMYYFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAMPDVAGNGTCGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGPADTLAFQAAVIADSAVYPTLDRGVAASGDCLRKVAVPPVVVPTITGPPGSSASRRVGGGGQGSRGSFLPTLGRFPA 229
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11932.1510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJD0_9PHAE2.440e-14188.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS69_ECTSI6.160e-13590.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11932contigE-fasciculatus_F_contig11932:102..3188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size891
Cds size807
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927703.4533443-UTR-E-fasciculatus_F_contig11932:101..1851622927703.4533443-UTR-E-fasciculatus_F_contig11932:101..185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11932 102..185 +
1695995657.5445378-UTR-E-fasciculatus_F_contig11932:101..1851695995657.5445378-UTR-E-fasciculatus_F_contig11932:101..185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11932 102..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927703.4699857-CDS-E-fasciculatus_F_contig11932:185..3001622927703.4699857-CDS-E-fasciculatus_F_contig11932:185..300Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 186..300 +
1695995657.5535614-CDS-E-fasciculatus_F_contig11932:185..3001695995657.5535614-CDS-E-fasciculatus_F_contig11932:185..300Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 186..300 +
1622927703.4839103-CDS-E-fasciculatus_F_contig11932:659..7451622927703.4839103-CDS-E-fasciculatus_F_contig11932:659..745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 660..745 +
1695995657.5631385-CDS-E-fasciculatus_F_contig11932:659..7451695995657.5631385-CDS-E-fasciculatus_F_contig11932:659..745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 660..745 +
1622927703.4970436-CDS-E-fasciculatus_F_contig11932:1269..14751622927703.4970436-CDS-E-fasciculatus_F_contig11932:1269..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 1270..1475 +
1695995657.5780587-CDS-E-fasciculatus_F_contig11932:1269..14751695995657.5780587-CDS-E-fasciculatus_F_contig11932:1269..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 1270..1475 +
1622927703.5160892-CDS-E-fasciculatus_F_contig11932:1892..19891622927703.5160892-CDS-E-fasciculatus_F_contig11932:1892..1989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 1893..1989 +
1695995657.5927362-CDS-E-fasciculatus_F_contig11932:1892..19891695995657.5927362-CDS-E-fasciculatus_F_contig11932:1892..1989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 1893..1989 +
1622927703.54277-CDS-E-fasciculatus_F_contig11932:2296..24861622927703.54277-CDS-E-fasciculatus_F_contig11932:2296..2486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 2297..2486 +
1695995657.6083748-CDS-E-fasciculatus_F_contig11932:2296..24861695995657.6083748-CDS-E-fasciculatus_F_contig11932:2296..2486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 2297..2486 +
1622927703.5570297-CDS-E-fasciculatus_F_contig11932:3075..31881622927703.5570297-CDS-E-fasciculatus_F_contig11932:3075..3188Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 3076..3188 +
1695995657.6169393-CDS-E-fasciculatus_F_contig11932:3075..31881695995657.6169393-CDS-E-fasciculatus_F_contig11932:3075..3188Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11932 3076..3188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11932.1510.1prot_E-fasciculatus_F_contig11932.1510.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11932 186..3188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11932.1510.1

>prot_E-fasciculatus_F_contig11932.1510.1 ID=prot_E-fasciculatus_F_contig11932.1510.1|Name=mRNA_E-fasciculatus_F_contig11932.1510.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=269bp
MRVSRARRHRQRSALLRACMVVISLLADVELTLADEAAGLEPSMLSPLAQ
LTLIDAQVERDDMYYFQVLTEAWQSTRVRVSIEDCTPRTALIAAFGAEPT
PSRHELLAHAMPDLAGNGTCGVDVITRPSYSRDGVWHFAVVGGSPLRGDR
YFAGPPDTLAFQAAVIAESAVYPTLDRGVAASGDCLRKVAVPPVVVPTIT
GPPGSSAPRRGGGGGQGSSGSFLPTLGRFPAGGAAEKTEGKDRGGGQGEE
DDARHDAATALLLSPSWLG
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mRNA from alignment at E-fasciculatus_F_contig11932:102..3188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11932.1510.1 ID=mRNA_E-fasciculatus_F_contig11932.1510.1|Name=mRNA_E-fasciculatus_F_contig11932.1510.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3087bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11932:102..3188+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTCGATCCATGTGATGTGCCTGCCATCTTGTTCTGCTCTGGCATCATCG
ACGGCGCCAAGCGGCTGACGGACACTGCAATACGATGCGAGTATCTAGAG
CCAGGAGACATCGGCAGAGGTCCGCGCTCTTAAGGGCGTGTATGGTGGTT
ATCTCTCTGCTGGCTGATGTTGAGCTCACGCTTGCAGACGAAGCAGCAGG
TGAGGGTTTTGCGTACAACTATGCATACAAGCAGCAGTCTTTACAGGCGG
AGTCTACGTACTCCCGGTGTAACTAGAGGGAGAGAGGTCGAGTCCTTCAA
GTCTCTCTCGAGTGCCGTGGCTAATGCCAACGGCTAGCAACGGGGTTGAT
CAGCCGGCAGGCCTCGTTGCATTGCGTGTAAGCAGCAAGCACAGGTTTGC
CTTTCGTGGTTGCTACTACATACGATTCCCAACACACAGATTACTCCGCG
CTCCGCTCAGAGTGCTGCTTGTGCACCTTTGCCGGAGAGGCGCCTCACGT
TACGATACCGCACCTTTTGTCTCTCTCTCTCTCTCGTCCTGCCTGGCCGC
TGTCTCAGGCCTCGAGCCGAGCATGCTCTCTCCTCTCGCGCAGCTCACGC
TGATTGACGCACAGGTGGAGCGGGACGACATGTACTATTTCCAGGTCCGG
CAACATGTAAATGTAGTTGCAGCCGTGGTTGGACGTATTGGTACATCGAC
CGTAGACGATGGCTGTGCTACAGAGTACTTGCTTGTAGTCGAGACAAGAG
GCAGGGCGGACTAAGTAGACCACAGGATGCGTACTGCTGTTGCTGTATTG
ATGTAGCACCAGTGGGAGTACCGGAGCACAACGAGGCTAGTGTACTATTT
TCTACTCCTATGTTTTAGCGCAGCAGCAGCAGCCAAGGGTAAAGAGTCCC
TTTTCTTACACGCCGGAGTCCTGATGGCAGTCTCGACGAAGTCCTTTGCG
CCTGGTTAAAAAGATCGGCATCATGCGTGCACGGAAAGGAGGCACCGACG
CAACCCGCGCGTGCCCTGCAGCTGGGGACGAGTGTAATGTAGTCTAGTCT
ACTTGGACAACACCGCGTGAGAGCGCTACCGCGAACCACATCTTCCTTGG
CTGAACCGGTGGAGGTGTTGCTTGGTGTGATGCCTACCCCGTGCGGTTTG
CCCTCGTGGTCCGCGCAGGTGCTTACCGAGGCCTGGCAGAGCACGCGGGT
GAGGGTGTCGATCGAGGACTGCACCCCCCGCACCGCCCTCATCGCAGCCT
TCGGGGCGGAGCCCACCCCTTCCCGCCACGAGCTCCTGGCACACGCCATG
CCGGACCTTGCTGGGAACGGGACGTGCGGCGTGGACGTGATCACTCGGCC
GTCTTACTCCAGAGACGGCGTCTGGTGCGCGCTGCCTACCCTGCCTGTTC
TGTTGGTACAGAGAGCATAGTAGTTCGCGTTTCCCCTCGTTGAAAAGAAG
GTGCAGAAGTTACAGCGCTGCAGGCACGCACCGAGGCAGCAGCCTTGATT
GTGGGCGGGTGGTGGGTCACGGCATCCCGAAGATCAGCGTCAAAGCAGCA
GCTGTCAACGAAACATGGCACGGTAGTACTCCGTACCGTGTGTGCTATTT
CACGGCCATCATGCACGGTATGTACAGAGCAGCACCGGTACTCCTCCTTG
ACGCCTACACCCTCCACGTGCCGCAGAGCGACACTATTTAGGTCAAACAG
CTTTTCCCCTTAGGTAGCCTCTTGTTGCGCTTTCCCCGCCTTTTGTTCCC
TTGTTTTGGTTGTTTTTGGGCGGGTAACGGCCGCAACACAGGCACTTCGC
CGTGGTGGGAGGGTCGCCGCTTCGCGGGGATAGGTATTTTGCCGGGCCTC
CAGATACCTTGGCATTCCAAGCAGCCGTCATTGCCGAGGTGAGTGTTCTT
AAAATAACTAGCTATTATAGTGCGGGTTCTTGACTGTGTTTTTCAATTCT
TGTCGACCTGCTGCATGATAGTGCTCCAGACCGCACGGCTGATGGGTACG
CCCAGCGCGCGCAGTGGCGCCGTGCTTGGCATCACCCTTTGCTGCTGCTG
CATGACGTCAGCTTTTTGGGCTTCTCCCCTTAATTCCGCACATGGAGATA
CCGGCTCGCTCACTCGCAGCTGCTGCTGCTGCTGCCGCTGTTTGTCATCC
CTCCATATCGTCCTGTTTTTTCTTTCTGCGTGCTCGTCCGCCCAGAGCGC
CGTATACCCCACTCTAGACCGGGGTGTAGCAGCTTCGGGCGACTGCCTGC
GGAAGGTCGCCGTACCCCCGGTCGTTGTCCCGACAATCACGGGCCCTCCG
GGATCGTCCGCCCCCAGACGAGGCGGCGGCGGTGGTCAGGGGTCTAGCGG
GAGCTTCTTGCCCACATTAGGCAGGTTTCCCGCGGGTGAGTGAGGGTGTG
TGTGAGTGTGCGTTGCTTTTCTCCTTCGGCGGCTGGCGTAAAAGGCGAAT
CATGTAGAGGAGTGCCCTAGGATTTCGCTTCCGACGTCCCCTGAAGATCC
GGATAATATGTGGCGTGCACAACGTCGTGGGCCCCTTGACACACTTGGCT
GTCCCAGCGCTTCTTTTTTCTCGGTGCTGTTGGCCTCAAGGGCTCCCTGG
GTTTTGACGTCTATTCTGCCTTCAGGCACAAGTAAAAGAGAAATGGTGTG
CCATGTCCGCAAGGCGCGTGTTGTAGAGTGTCAGATTCATGAGTTACTCT
ACCGATCTCGAACAGCTACTGTACGAGGGCGTTTCCCTGCAATACCGAAC
GCTATCGCTGCTCGATGGGCACAAGGTATATACGCAAAGGGAATACGCAA
AGGGAATAAAATCTATAGTCGCCATCAGGGGAGAGGATAGCCTTCGTCTC
TGTGCTCGAGGTGCTACTTAGCGCTACCCTACAGCGACAACCCGTTCGTT
TTCCGTTCCACCGCCGTCCCCCCGCCGCTTGTCTGGTACCTATCAACCAA
CCCACCGCCGTCGTGACTCGGAAGGGGGCGCCGCGGAGAAGACCGAGGGG
AAAGACAGGGGGGGGGGGCAGGGCGAGGAAGACGACGCTCGGCACGACGC
CGCCACGGCCCTCCTCCTCTCGCCCTCGTGGCTTGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11932:102..3188+

>mRNA_E-fasciculatus_F_contig11932.1510.1 ID=mRNA_E-fasciculatus_F_contig11932.1510.1|Name=mRNA_E-fasciculatus_F_contig11932.1510.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1614bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11932:102..3188+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGAGTATCTAGAGCCAGGAGACATCGGCAGAGGTCCGCGCTCTTAAG
GGCGTGTATGGTGGTTATCTCTCTGCTGGCTGATGTTGAGCTCACGCTTG
CAGACGAAGCAGCAGATGCGAGTATCTAGAGCCAGGAGACATCGGCAGAG
GTCCGCGCTCTTAAGGGCGTGTATGGTGGTTATCTCTCTGCTGGCTGATG
TTGAGCTCACGCTTGCAGACGAAGCAGCAGGCCTCGAGCCGAGCATGCTC
TCTCCTCTCGCGCAGCTCACGCTGATTGACGCACAGGTGGAGCGGGACGA
CATGTACTATTTCCAGGCCTCGAGCCGAGCATGCTCTCTCCTCTCGCGCA
GCTCACGCTGATTGACGCACAGGTGGAGCGGGACGACATGTACTATTTCC
AGGTGCTTACCGAGGCCTGGCAGAGCACGCGGGTGAGGGTGTCGATCGAG
GACTGCACCCCCCGCACCGCCCTCATCGCAGCCTTCGGGGCGGAGCCCAC
CCCTTCCCGCCACGAGCTCCTGGCACACGCCATGCCGGACCTTGCTGGGA
ACGGGACGTGCGGCGTGGACGTGATCACTCGGCCGTCTTACTCCAGAGAC
GGCGTCTGGTGCTTACCGAGGCCTGGCAGAGCACGCGGGTGAGGGTGTCG
ATCGAGGACTGCACCCCCCGCACCGCCCTCATCGCAGCCTTCGGGGCGGA
GCCCACCCCTTCCCGCCACGAGCTCCTGGCACACGCCATGCCGGACCTTG
CTGGGAACGGGACGTGCGGCGTGGACGTGATCACTCGGCCGTCTTACTCC
AGAGACGGCGTCTGGCACTTCGCCGTGGTGGGAGGGTCGCCGCTTCGCGG
GGATAGGTATTTTGCCGGGCCTCCAGATACCTTGGCATTCCAAGCAGCCG
TCATTGCCGAGGCACTTCGCCGTGGTGGGAGGGTCGCCGCTTCGCGGGGA
TAGGTATTTTGCCGGGCCTCCAGATACCTTGGCATTCCAAGCAGCCGTCA
TTGCCGAGAGCGCCGTATACCCCACTCTAGACCGGGGTGTAGCAGCTTCG
GGCGACTGCCTGCGGAAGGTCGCCGTACCCCCGGTCGTTGTCCCGACAAT
CACGGGCCCTCCGGGATCGTCCGCCCCCAGACGAGGCGGCGGCGGTGGTC
AGGGGTCTAGCGGGAGCTTCTTGCCCACATTAGGCAGGTTTCCCGCGGAG
CGCCGTATACCCCACTCTAGACCGGGGTGTAGCAGCTTCGGGCGACTGCC
TGCGGAAGGTCGCCGTACCCCCGGTCGTTGTCCCGACAATCACGGGCCCT
CCGGGATCGTCCGCCCCCAGACGAGGCGGCGGCGGTGGTCAGGGGTCTAG
CGGGAGCTTCTTGCCCACATTAGGCAGGTTTCCCGCGGGGGGCGCCGCGG
AGAAGACCGAGGGGAAAGACAGGGGGGGGGGGCAGGGCGAGGAAGACGAC
GCTCGGCACGACGCCGCCACGGCCCTCCTCCTCTCGCCCTCGTGGCTTGG
GGGGGCGCCGCGGAGAAGACCGAGGGGAAAGACAGGGGGGGGGGGCAGGG
CGAGGAAGACGACGCTCGGCACGACGCCGCCACGGCCCTCCTCCTCTCGC
CCTCGTGGCTTGGG
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