mRNA_E-fasciculatus_F_contig11927.1508.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11927.1508.1
Unique NamemRNA_E-fasciculatus_F_contig11927.1508.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11927.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11927contigE-fasciculatus_F_contig11927:3240..4054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size815
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11927.1508.1prot_E-fasciculatus_F_contig11927.1508.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11927 3270..3917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927702.971043-UTR-E-fasciculatus_F_contig11927:3239..32691622927702.971043-UTR-E-fasciculatus_F_contig11927:3239..3269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11927 3240..3269 +
1695995657.2002866-UTR-E-fasciculatus_F_contig11927:3239..32691695995657.2002866-UTR-E-fasciculatus_F_contig11927:3239..3269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11927 3240..3269 +
1622927702.9951036-UTR-E-fasciculatus_F_contig11927:3917..40541622927702.9951036-UTR-E-fasciculatus_F_contig11927:3917..4054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11927 3918..4054 +
1695995657.2200723-UTR-E-fasciculatus_F_contig11927:3917..40541695995657.2200723-UTR-E-fasciculatus_F_contig11927:3917..4054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11927 3918..4054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927702.982865-CDS-E-fasciculatus_F_contig11927:3269..39171622927702.982865-CDS-E-fasciculatus_F_contig11927:3269..3917Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11927 3270..3917 +
1695995657.2100973-CDS-E-fasciculatus_F_contig11927:3269..39171695995657.2100973-CDS-E-fasciculatus_F_contig11927:3269..3917Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11927 3270..3917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11927.1508.1

>prot_E-fasciculatus_F_contig11927.1508.1 ID=prot_E-fasciculatus_F_contig11927.1508.1|Name=mRNA_E-fasciculatus_F_contig11927.1508.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=216bp
MASCVSWEELRSGGRVTSASPWQTAEEIKRFFRIQPTAAPWGSAVHYYCC
VLGNGSQLTTRKRAFSTQRKSKNPFRRRKERDDSNSQRIPCSCQVSERVR
CRIKRRNVGPARTALGGESQDLPIKFRAHPCASVELCTMPTGAIGSPHRT
NDPKDEPFMNIAHCCTSRGAVFQTGYNVFVPLQYDLCRSNKHPFNCRIIS
TPDKSREFSGSNGEK*
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mRNA from alignment at E-fasciculatus_F_contig11927:3240..4054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11927.1508.1 ID=mRNA_E-fasciculatus_F_contig11927.1508.1|Name=mRNA_E-fasciculatus_F_contig11927.1508.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=815bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11927:3240..4054+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACACGATATATATACGACTGGATGGTTGGATGGCTAGCTGTGTGTCGTG
GGAGGAGCTCAGGTCAGGTGGGCGTGTGACCTCGGCTTCGCCTTGGCAAA
CGGCTGAAGAGATAAAACGTTTTTTTCGCATACAACCAACAGCAGCGCCG
TGGGGCAGTGCAGTGCACTATTACTGCTGTGTGTTAGGGAACGGGTCGCA
GCTGACGACTAGAAAGCGAGCATTCTCAACTCAACGAAAGTCAAAGAATC
CTTTTCGACGGCGGAAAGAACGAGATGATTCGAATAGCCAACGAATCCCC
TGCTCTTGCCAAGTATCAGAAAGGGTTCGTTGCCGGATAAAAAGGCGAAA
CGTCGGACCAGCTCGAACCGCTTTGGGTGGCGAGAGTCAGGATCTCCCCA
TCAAATTCAGAGCACATCCTTGCGCTTCTGTTGAACTCTGCACAATGCCA
ACCGGAGCAATCGGCTCACCCCATCGCACAAACGATCCAAAGGACGAGCC
TTTCATGAACATTGCACATTGTTGTACTTCACGAGGCGCAGTGTTTCAAA
CAGGGTACAACGTTTTTGTTCCCCTTCAATATGATTTGTGTAGGTCGAAC
AAGCACCCGTTCAATTGCCGGATCATTTCGACCCCAGACAAGTCACGCGA
GTTCTCTGGATCCAACGGAGAAAAATAAGCAGCGAAAGACAAGACACAAC
AAAGGACAGACACATCAACACCAGGGTAGTCGTATAGAATTCGGTTGCAG
GGAGACCTGCTGACACAACAGGTAAACAAGTACCCCCCTCTGGAGGACGC
CCGTGCCCTCACGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11927:3240..4054+

>mRNA_E-fasciculatus_F_contig11927.1508.1 ID=mRNA_E-fasciculatus_F_contig11927.1508.1|Name=mRNA_E-fasciculatus_F_contig11927.1508.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1296bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11927:3240..4054+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTAGCTGTGTGTCGTGGGAGGAGCTCAGGTCAGGTGGGCGTGTGAC
CTCGGCTTCGCCTTGGCAAACGGCTGAAGAGATAAAACGTTTTTTTCGCA
TACAACCAACAGCAGCGCCGTGGGGCAGTGCAGTGCACTATTACTGCTGT
GTGTTAGGGAACGGGTCGCAGCTGACGACTAGAAAGCGAGCATTCTCAAC
TCAACGAAAGTCAAAGAATCCTTTTCGACGGCGGAAAGAACGAGATGATT
CGAATAGCCAACGAATCCCCTGCTCTTGCCAAGTATCAGAAAGGGTTCGT
TGCCGGATAAAAAGGCGAAACGTCGGACCAGCTCGAACCGCTTTGGGTGG
CGAGAGTCAGGATCTCCCCATCAAATTCAGAGCACATCCTTGCGCTTCTG
TTGAACTCTGCACAATGCCAACCGGAGCAATCGGCTCACCCCATCGCACA
AACGATCCAAAGGACGAGCCTTTCATGAACATTGCACATTGTTGTACTTC
ACGAGGCGCAGTGTTTCAAACAGGGTACAACGTTTTTGTTCCCCTTCAAT
ATGATTTGTGTAGGTCGAACAAGCACCCGTTCAATTGCCGGATCATTTCG
ACCCCAGACAAGTCACGCGAGTTCTCTGGATCCAACGGAGAAAAATAAAT
GGCTAGCTGTGTGTCGTGGGAGGAGCTCAGGTCAGGTGGGCGTGTGACCT
CGGCTTCGCCTTGGCAAACGGCTGAAGAGATAAAACGTTTTTTTCGCATA
CAACCAACAGCAGCGCCGTGGGGCAGTGCAGTGCACTATTACTGCTGTGT
GTTAGGGAACGGGTCGCAGCTGACGACTAGAAAGCGAGCATTCTCAACTC
AACGAAAGTCAAAGAATCCTTTTCGACGGCGGAAAGAACGAGATGATTCG
AATAGCCAACGAATCCCCTGCTCTTGCCAAGTATCAGAAAGGGTTCGTTG
CCGGATAAAAAGGCGAAACGTCGGACCAGCTCGAACCGCTTTGGGTGGCG
AGAGTCAGGATCTCCCCATCAAATTCAGAGCACATCCTTGCGCTTCTGTT
GAACTCTGCACAATGCCAACCGGAGCAATCGGCTCACCCCATCGCACAAA
CGATCCAAAGGACGAGCCTTTCATGAACATTGCACATTGTTGTACTTCAC
GAGGCGCAGTGTTTCAAACAGGGTACAACGTTTTTGTTCCCCTTCAATAT
GATTTGTGTAGGTCGAACAAGCACCCGTTCAATTGCCGGATCATTTCGAC
CCCAGACAAGTCACGCGAGTTCTCTGGATCCAACGGAGAAAAATAA
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