mRNA_E-fasciculatus_F_contig11919.1505.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11919.1505.1
Unique NamemRNA_E-fasciculatus_F_contig11919.1505.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11919.1505.1 vs. uniprot
Match: D7FSZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ3_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.160e-13
Identity = 45/66 (68.18%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  118 TVGEPAELSPLRCEKQAGTVARPAGPEIHLMACVSLAAGAGARVTVGVVNATIANAASFSSEETFL 315
            TVGEPAE SPLRCEK A TV+  AGP I LMA VS+A GAG  V VG  NA  ANAAS SSE+ FL
Sbjct:   89 TVGEPAETSPLRCEKPALTVSVSAGPAIGLMAAVSMAPGAGC-VNVGAANAANANAASLSSEDAFL 153
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11919.1505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSZ3_ECTSI2.160e-1368.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11919contigE-fasciculatus_F_contig11919:4..318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927702.6401663-CDS-E-fasciculatus_F_contig11919:3..3181622927702.6401663-CDS-E-fasciculatus_F_contig11919:3..318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11919 4..318 +
1695995657.0378096-CDS-E-fasciculatus_F_contig11919:3..3181695995657.0378096-CDS-E-fasciculatus_F_contig11919:3..318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11919 4..318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11919.1505.1prot_E-fasciculatus_F_contig11919.1505.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11919 4..318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11919.1505.1

>prot_E-fasciculatus_F_contig11919.1505.1 ID=prot_E-fasciculatus_F_contig11919.1505.1|Name=mRNA_E-fasciculatus_F_contig11919.1505.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
AGTAAGTGRAAGAGGLGQGAAPMDTTPAAAAAAAAAAAATVGEPAELSPL
RCEKQAGTVARPAGPEIHLMACVSLAAGAGARVTVGVVNATIANAASFSS
EETFL
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mRNA from alignment at E-fasciculatus_F_contig11919:4..318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11919.1505.1 ID=mRNA_E-fasciculatus_F_contig11919.1505.1|Name=mRNA_E-fasciculatus_F_contig11919.1505.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=315bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11919:4..318+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGGGACAGCGGCCGGTACAGGCAGAGCAGCCGGGGCAGGGGGCCTAGG
CCAGGGAGCTGCGCCGATGGATACAACCCCTGCCGCCGCCGCCGCCGCCG
CCGCCGCCGCCGCCGCCACCGTTGGGGAGCCTGCTGAACTGTCTCCCCTT
CGGTGTGAGAAGCAAGCAGGAACGGTCGCACGGCCCGCTGGTCCAGAAAT
CCACCTCATGGCCTGCGTCTCTCTGGCAGCCGGCGCGGGTGCGCGTGTCA
CCGTGGGCGTAGTCAACGCCACCATAGCCAATGCTGCCTCGTTTTCGTCC
GAAGAAACCTTTCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11919:4..318+

>mRNA_E-fasciculatus_F_contig11919.1505.1 ID=mRNA_E-fasciculatus_F_contig11919.1505.1|Name=mRNA_E-fasciculatus_F_contig11919.1505.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11919:4..318+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGGGACAGCGGCCGGTACAGGCAGAGCAGCCGGGGCAGGGGGCCTAGG
CCAGGGAGCTGCGCCGATGGATACAACCCCTGCCGCCGCCGCCGCCGCCG
CCGCCGCCGCCGCCGCCACCGTTGGGGAGCCTGCTGAACTGTCTCCCCTT
CGGTGTGAGAAGCAAGCAGGAACGGTCGCACGGCCCGCTGGTCCAGAAAT
CCACCTCATGGCCTGCGTCTCTCTGGCAGCCGGCGCGGGTGCGCGTGTCA
CCGTGGGCGTAGTCAACGCCACCATAGCCAATGCTGCCTCGTTTTCGTCC
GAAGAAACCTTTCTGGCAGGGACAGCGGCCGGTACAGGCAGAGCAGCCGG
GGCAGGGGGCCTAGGCCAGGGAGCTGCGCCGATGGATACAACCCCTGCCG
CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACCGTTGGGGAGCCTGCT
GAACTGTCTCCCCTTCGGTGTGAGAAGCAAGCAGGAACGGTCGCACGGCC
CGCTGGTCCAGAAATCCACCTCATGGCCTGCGTCTCTCTGGCAGCCGGCG
CGGGTGCGCGTGTCACCGTGGGCGTAGTCAACGCCACCATAGCCAATGCT
GCCTCGTTTTCGTCCGAAGAAACCTTTCTG
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