mRNA_E-fasciculatus_F_contig11918.1504.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11918.1504.1
Unique NamemRNA_E-fasciculatus_F_contig11918.1504.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: D8LKN6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN6_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.310e-40
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQFGGRGG 222
            STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDE+EGGEGFDMSALDGGSQFGGRGG
Sbjct:   64 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGG 136
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: A0A6H5JGK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.610e-33
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:   37 MHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQFGGRGG 222
            MHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDE+EGGEGFDMSALDGGSQFGGRGG
Sbjct:    1 MHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGG 62
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: A0A835ZBP3_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 5.220e-24
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQFGGRGG 222
            STWKVLP SIQMHI+K  +D  FW RL KDK+LEK  + IDWNK+VDEDEE+   GFDMSAL GGS FGG GG
Sbjct:   65 STWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGGYGG 137
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: A0A4D9CXJ1_9STRA (CS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXJ1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.830e-22
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQF 207
            S WKVLPRSIQ+ + KE ED  FWERLLKDK LEKTNVK+DW+++VDEDEEE    FDMS L+GG  F
Sbjct:   63 SVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDF 130
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: A0A7S0AJF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AJF6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.420e-21
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKET----EDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQFGG 213
            ST+KVLPRSIQMH+MK T    ED+ FW RLLKDK+LEK  VKIDW+++VDEDEE+   GFD SAL+GG   GG
Sbjct:   66 STYKVLPRSIQMHVMKATSKDDEDEEFWPRLLKDKALEKNQVKIDWDRYVDEDEEDEAGGFDTSALEGGMGMGG 139
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: A0A7S1DAL4_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAL4_CYCTE)

HSP 1 Score: 95.1 bits (235), Expect = 3.510e-21
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMK--ETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQFGG 213
            ST+KVLPRS+QMH+MK  +++D  FW RLLKDK+LEK  VKIDW+++VDEDEEE   GFDMSAL GG   GG
Sbjct:   91 STYKVLPRSVQMHVMKRDKSDDSEFWPRLLKDKALEKNQVKIDWDRYVDEDEEEDAGGFDMSALQGGMGMGG 162
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: A0A7S0C9D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9D9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.570e-21
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQFGG 213
            S++KVLPRSIQM++MK+  D+ FW RLLKDK+LEK  VKIDW+++VDEDEE+   GFD S LDGG   GG
Sbjct:   67 SSYKVLPRSIQMNVMKDNADEEFWTRLLKDKALEKNRVKIDWDRYVDEDEEDEAGGFDTSNLDGGQGMGG 136
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: A0A7S1XZ43_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1XZ43_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.170e-20
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQFGG 213
            ST+KVLPRS+QMHI+K+ +++ FW RLLKDK+LEK  VKIDW+++VDEDEEE  EGFD S LDGG   GG
Sbjct:   95 STYKVLPRSVQMHILKKEKEEEFWSRLLKDKALEKNQVKIDWDRYVDEDEEE--EGFDTSNLDGGMGMGG 162
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: B7FPF4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPF4_PHATC)

HSP 1 Score: 92.8 bits (229), Expect = 2.000e-20
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETED-DAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQFGG 213
            ST+KVLPRSIQMH+MK  ED + FW RLLKDK+LEK  VKIDW+++VDEDEE+  EGFD SAL+GG   GG
Sbjct:   68 STYKVLPRSIQMHVMKHEEDREEFWPRLLKDKALEKNQVKIDWDRYVDEDEED--EGFDTSALEGGMGMGG 136
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BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Match: A0A1E7FT42_9STRA (HSP20-like chaperone n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FT42_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.300e-20
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMK-ETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEEEGGEGFDMSALDGGSQFG 210
            ST+ VLPRS+QMHI+K E E++ FW RLLKDK+LEK  +KIDW+++VDEDEEE  EGFDMS +DGGS  G
Sbjct:   64 STYNVLPRSVQMHILKDEKEEEEFWTRLLKDKALEKNQIKIDWDRYVDEDEEE--EGFDMSNMDGGSGMG 131
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11918.1504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKN6_ECTSI1.310e-4098.63CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JGK5_9PHAE5.610e-3398.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZBP3_9STRA5.220e-2469.86HSP20-like chaperone n=1 Tax=Tribonema minus TaxID... [more]
A0A4D9CXJ1_9STRA1.830e-2269.12CS domain-containing protein n=3 Tax=Monodopsidace... [more]
A0A7S0AJF6_9STRA1.420e-2166.22Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S1DAL4_CYCTE3.510e-2166.67Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S0C9D9_9STRA7.570e-2164.29Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1XZ43_9STRA1.170e-2067.14Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B7FPF4_PHATC2.000e-2069.01Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FT42_9STRA2.300e-2067.14HSP20-like chaperone n=1 Tax=Fragilariopsis cylind... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11918contigE-fasciculatus_F_contig11918:2512..3815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue5.3e-33
Seed eggNOG ortholog2880.D8LKN6
Preferred nameSBA1
KEGG rclassRC00672
KEGG koko:K10858,ko:K13127,ko:K15730
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,ko03430,ko03460,map00590,map01100,map03430,map03460
KEGG ModuleM00295
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006457,GO:0007275,GO:0008150,GO:0009506,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010449,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010648,GO:0010817,GO:0016020,GO:0019219,GO:0019222,GO:0022622,GO:0023051,GO:0023057,GO:0030054,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032879,GO:0033043,GO:0033044,GO:0035266,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0048364,GO:0048507,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051052,GO:0051054,GO:0051087,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051338,GO:0051972,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071944,GO:0080036,GO:0080037,GO:0080090,GO:0099402,GO:1904356,GO:1904358,GO:2000012,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.prostaglandin-E synthase activity
EggNOG OGsKOG3158@1,KOG3158@2759
EC5.3.99.3
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-03_000990.1
Exons3
Model size483
Cds size483
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11918.1504.1prot_E-fasciculatus_F_contig11918.1504.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11918 2512..3815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927702.5700548-CDS-E-fasciculatus_F_contig11918:2511..28281622927702.5700548-CDS-E-fasciculatus_F_contig11918:2511..2828Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11918 2512..2828 -
1695995657.0074317-CDS-E-fasciculatus_F_contig11918:2511..28281695995657.0074317-CDS-E-fasciculatus_F_contig11918:2511..2828Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11918 2512..2828 -
1622927702.5853727-CDS-E-fasciculatus_F_contig11918:3078..31541622927702.5853727-CDS-E-fasciculatus_F_contig11918:3078..3154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11918 3079..3154 -
1695995657.0193827-CDS-E-fasciculatus_F_contig11918:3078..31541695995657.0193827-CDS-E-fasciculatus_F_contig11918:3078..3154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11918 3079..3154 -
1622927702.5989964-CDS-E-fasciculatus_F_contig11918:3725..38151622927702.5989964-CDS-E-fasciculatus_F_contig11918:3725..3815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11918 3726..3815 -
1695995657.0284526-CDS-E-fasciculatus_F_contig11918:3725..38151695995657.0284526-CDS-E-fasciculatus_F_contig11918:3725..3815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11918 3726..3815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11918.1504.1

>prot_E-fasciculatus_F_contig11918.1504.1 ID=prot_E-fasciculatus_F_contig11918.1504.1|Name=mRNA_E-fasciculatus_F_contig11918.1504.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=161bp
XSTWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDED
EEEGGEGFDMSALDGGSQFGGRGGPPGGMGGMGGMGGMGGMGGMGGMGGM
GGMGGMGGMGGMGGMGGMGGGEGGMPAGMAEMMAKMQAGEMGGMGGAEDD
DEDDDDEVRW*
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mRNA from alignment at E-fasciculatus_F_contig11918:2512..3815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11918.1504.1 ID=mRNA_E-fasciculatus_F_contig11918.1504.1|Name=mRNA_E-fasciculatus_F_contig11918.1504.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1304bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11918:2512..3815- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
NNAAGCACATGGAAAGTGCTGCCTCGCAGCATCCAGATGCACATCATGAA
AGAGACTGAGGACGACGCCTTCTGGGAGCGCCTCCTCAAGGTGGGGAGAA
CTGAATATATCATCTCCGGAGATGATGTCGTCTCGTGTTTTTTTTTTCTT
CTCACGTTACAAAAAAAAGAAAAGAAAGTGTGACCCGGGTTTTTTCTCGA
CCAAGGAATGGTGTTGCCGATAGGAAAACGGCCGAGGGACGGGCCGCTGC
AGCAGTTACCCGAGTCGAGCCGCGCTCTTAAAACCGTCCAAGAGGGTGTC
GAGAGAGGCGGCCAAAATCAAGGGAAAAGGGCGATTTACCCACGCTGGAA
CACCACTGTGAAACACCTATGATATGTGAATGTGAAAGTCTGGACTCTTT
GGAAATGGCAGTGTAATTTCGATTTGGATGAGCCCTGCCAGTCTGCACAA
AAACCCGTCCCCTCCCCCTTCCGTCCCTCCCTCCCTTACGTACCTGTCTG
TGTATGTCTCTCTGTCCTCCTGCCTCTTATCTTGTCCACATGCTGCCCCC
CCTCCCCCTGTCACTCTTTCTCTTACACTGCTCTGATTGTTTCTGTCGCT
TACTCTTTTCTCTCTGCCCATCTGCCTCTCCCTCTACCCCTCCCCAAAAA
CGGCTTCGCAGGACAAGTCCTTGGAGAAAACTAACGTGAAGATTGACTGG
AACAAGTTCGTTGACGAGGACGAAGAAGAGGGCGGAGGTTTGTGCCTGCA
GCCAACCTCAAAGTTGTTGGCATTCCTTTTTTTCTCTTCTTTTTATGTAT
TTTCTTTTTTGTTCCATCGATGCTCTATCGATGCTCTCTTCACCACGTGT
TAACAACATTATTTGTTTTGTGCTGTCGTTGTCACAAGCTCTGTCTCTCT
ACCGTTTTTCACATCCCCCTTGTCGCGCTCTCTTCTGCGCTCGAAATTTT
CATCTCCGTGACTGCCGCAAATTTCCCGGACATGCAGAAGGGTTCGACAT
GAGTGCCCTCGATGGAGGCAGCCAATTCGGAGGCCGTGGCGGCCCTCCCG
GCGGAATGGGGGGTATGGGGGGTATGGGGGGCATGGGGGGTATGGGGGGC
ATGGGGGGTATGGGGGGCATGGGAGGCATGGGGGGTATGGGAGGTATGGG
AGGTATGGGGGGTATGGGAGGAATGGGCGGAGGCGAGGGAGGGATGCCGG
CAGGCATGGCAGAGATGATGGCCAAGATGCAGGCGGGCGAGATGGGAGGC
ATGGGAGGAGCCGAGGACGACGACGAAGACGATGATGACGAGGTGCGATG
GTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11918:2512..3815-

>mRNA_E-fasciculatus_F_contig11918.1504.1 ID=mRNA_E-fasciculatus_F_contig11918.1504.1|Name=mRNA_E-fasciculatus_F_contig11918.1504.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=966bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11918:2512..3815- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
NNAAGCACATGGAAAGTGCTGCCTCGCAGCATCCAGATGCACATCATGAA
AGAGACTGAGGACGACGCCTTCTGGGAGCGCCTCCTCAAGNNAAGCACAT
GGAAAGTGCTGCCTCGCAGCATCCAGATGCACATCATGAAAGAGACTGAG
GACGACGCCTTCTGGGAGCGCCTCCTCAAGGACAAGTCCTTGGAGAAAAC
TAACGTGAAGATTGACTGGAACAAGTTCGTTGACGAGGACGAAGAAGAGG
GCGGAGGACAAGTCCTTGGAGAAAACTAACGTGAAGATTGACTGGAACAA
GTTCGTTGACGAGGACGAAGAAGAGGGCGGAGAAGGGTTCGACATGAGTG
CCCTCGATGGAGGCAGCCAATTCGGAGGCCGTGGCGGCCCTCCCGGCGGA
ATGGGGGGTATGGGGGGTATGGGGGGCATGGGGGGTATGGGGGGCATGGG
GGGTATGGGGGGCATGGGAGGCATGGGGGGTATGGGAGGTATGGGAGGTA
TGGGGGGTATGGGAGGAATGGGCGGAGGCGAGGGAGGGATGCCGGCAGGC
ATGGCAGAGATGATGGCCAAGATGCAGGCGGGCGAGATGGGAGGCATGGG
AGGAGCCGAGGACGACGACGAAGACGATGATGACGAGGTGCGATGGTAGA
AGGGTTCGACATGAGTGCCCTCGATGGAGGCAGCCAATTCGGAGGCCGTG
GCGGCCCTCCCGGCGGAATGGGGGGTATGGGGGGTATGGGGGGCATGGGG
GGTATGGGGGGCATGGGGGGTATGGGGGGCATGGGAGGCATGGGGGGTAT
GGGAGGTATGGGAGGTATGGGGGGTATGGGAGGAATGGGCGGAGGCGAGG
GAGGGATGCCGGCAGGCATGGCAGAGATGATGGCCAAGATGCAGGCGGGC
GAGATGGGAGGCATGGGAGGAGCCGAGGACGACGACGAAGACGATGATGA
CGAGGTGCGATGGTAG
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