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Homology
BLAST of mRNA_E-fasciculatus_F_contig11917.1503.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI) HSP 1 Score: 408 bits (1049), Expect = 4.260e-129 Identity = 250/291 (85.91%), Postives = 258/291 (88.66%), Query Frame = 3
Query: 3 TMSGILNLIASIWESILPALEKTVNEPSLDLIQQTVTGEALSILYRRFCGQEGCRAAFMRVAGLAGGDLAPGMLEDVVVEMLALPADAPPSAYGPTVDLLCSWGQHEHLVGAVVESLRKAFSAPA-TTTTTAIDE-AGSGEIDDVKG--SRGKRRRPTSRKKGHDEEGGEGEV---TCIPAPLALNMLGHLLAGGEGHPATGAARDAIMASDEAVGSLEAVLVLARSATTSRLSSSPVSXXXXXXXXXXXXXXXXXXXREDKEKVSFRRRCPDALLVRALETLGRVYMHRE 854
TMSGILNLIASIWESILPALEKT+NEPSLDLIQQTVTGEALSILYRRF GQ+ CRAAFMRVAGLAGGDLAPGMLEDVVVEMLALPADAPPSAYGPTVDLLCSWGQHEHLVGAVVESLRKAFS P TTT TA DE AGSGEI D KG SRGKRR P SRK+G+ TCIPAPLALNMLGHLLAGGEGHP+TGAARDAIMASDEAVGSLEAVLVLARSA T+RLSS XXXXXXXXXXXXXXXXXXXRED+E+VS RRRCPDALLVRALE LGRVYMHRE
Sbjct: 718 TMSGILNLIASIWESILPALEKTINEPSLDLIQQTVTGEALSILYRRFSGQDECRAAFMRVAGLAGGDLAPGMLEDVVVEMLALPADAPPSAYGPTVDLLCSWGQHEHLVGAVVESLRKAFSVPVKTTTATATDEEAGSGEIADGKGKSSRGKRRXPASRKEGNXXXXXXXXXXXXTCIPAPLALNMLGHLLAGGEGHPSTGAARDAIMASDEAVGSLEAVLVLARSAATTRLSSXXXXXXXXXXXXXXXXXXXXXXXREDEERVSLRRRCPDALLVRALEALGRVYMHRE 1008
BLAST of mRNA_E-fasciculatus_F_contig11917.1503.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE) HSP 1 Score: 386 bits (992), Expect = 2.700e-121 Identity = 234/284 (82.39%), Postives = 240/284 (84.51%), Query Frame = 3
Query: 3 TMSGILNLIASIWESILPALEKTVNEPSLDLIQQTVTGEALSILYRRFCGQEGCRAAFMRVAGLAGGDLAPGMLEDVVVEMLALPADAPPSAYGPTVDLLCSWGQHEHLVGAVVESLRKAFSAPATTTTTAIDEAGSGEIDDVKGSRGKRRRPTSRKKGHDEEGGEGEVTCIPAPLALNMLGHLLAGGEGHPATGAARDAIMASDEAVGSLEAVLVLARSATTSRLSSSPVSXXXXXXXXXXXXXXXXXXXREDKEKVSFRRRCPDALLVRALETLGRVYMHRE 854
TMSGILNLIASIWESILPALEKT+NEPSLDLIQQTVTGEALSILYRRFCGQ+ CRAAFMR+AGLAGGDLAPGMLEDVVVEMLALPADAPPSAYGPTVDLLCSWGQHEHLVGAVVESLRK FSAP TTTTA+DEAGSGE+DD HDE G G CIPAPLALNMLGHLLAGGEGHP+TGAARDAIMASDEAVGSLEAVLVLARSAT XXXXXXXXXXXXXXXXXXX KVS RRRCPDALLVRALE LGRVYMHRE
Sbjct: 587 TMSGILNLIASIWESILPALEKTINEPSLDLIQQTVTGEALSILYRRFCGQDECRAAFMRLAGLAGGDLAPGMLEDVVVEMLALPADAPPSAYGPTVDLLCSWGQHEHLVGAVVESLRKFFSAPRITTTTAVDEAGSGEMDDGD---------------HDEGGRGGGGMCIPAPLALNMLGHLLAGGEGHPSTGAARDAIMASDEAVGSLEAVLVLARSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XKVSLRRRCPDALLVRALEALGRVYMHRE 851
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 414.1 |
| Seed ortholog evalue | 5.3e-113 |
| Seed eggNOG ortholog | 2880.D8LF93 |
| Preferred name | NCAPG2 |
| KEGG ko | ko:K11492 |
| GOs | GO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001932,GO:0001934,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010469,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033674,GO:0034101,GO:0034641,GO:0034645,GO:0034654,GO:0035064,GO:0040007,GO:0042325,GO:0042327,GO:0042393,GO:0042592,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043425,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044815,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045646,GO:0045647,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901576,GO:1903047,GO:1903706,GO:1903707,GO:2000026,GO:2000273 |
| EggNOG free text desc. | inner cell mass cell proliferation |
| EggNOG OGs | KOG1949@1,KOG1949@2759 |
| COG Functional cat. | Q |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03036 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 856 |
| Cds size | 849 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11917.1503.1 >prot_E-fasciculatus_F_contig11917.1503.1 ID=prot_E-fasciculatus_F_contig11917.1503.1|Name=mRNA_E-fasciculatus_F_contig11917.1503.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=283bp
MSGILNLIASIWESILPALEKTVNEPSLDLIQQTVTGEALSILYRRFCGQ
EGCRAAFMRVAGLAGGDLAPGMLEDVVVEMLALPADAPPSAYGPTVDLLC
SWGQHEHLVGAVVESLRKAFSAPATTTTTAIDEAGSGEIDDVKGSRGKRR
RPTSRKKGHDEEGGEGEVTCIPAPLALNMLGHLLAGGEGHPATGAARDAI
MASDEAVGSLEAVLVLARSATTSRLSSSPVSTSSSLTTTTTTTTIATTTK
REDKEKVSFRRRCPDALLVRALETLGRVYMHRE back to topmRNA from alignment at E-fasciculatus_F_contig11917:1086..3850- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig11917.1503.1 ID=mRNA_E-fasciculatus_F_contig11917.1503.1|Name=mRNA_E-fasciculatus_F_contig11917.1503.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2765bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11917:1086..3850- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGACCATGTCGGGCATCCTGAACCTAATCGCGAGCATCTGGGAGAGCATC
CTGCCCGCCCTTGAAAAGACCGTCAATGAGCCCTCGCTCGACCTCATCCA
GCAGACGGTTACAGGTGACAAGAGGACTATCATACTACTCTGCGCGTTAT
TCGTATCCACTGCTGCCGTGCGTTAAACAACTCCGCCTCCGTCGTTCTTG
CACACACACCGACCGTAGTTCAAGTCGTGGCTGCAGATGTGTGGAGGGCT
AATACGATCATCTCTACCATGACCCCCGACACCACGCAGGCGAGGCGTTG
TCGATCCTGTATAGGCGTTTTTGTGGTCAGGAAGGGTGCCGGGCGGCGTT
CATGCGAGTGGCGGGGCTTGCGGGAGGTGACCTGGCCCCCGGCATGCTGG
AGGACGTCGTGGTTGAGATGCTCGCCCTGCCCGCGGTGAGCGACGGCTTG
AAAATTATTTTACATGTGTTTCTTTTTTCAGGTGAGAGCTATAAAGTTGT
TTCTTTTTGTTTCTGGCCTATGTATGCTGGAGGCTCGCTCACTCCGAGGA
CTTCGGGAAGAAACTCAACGTATGTTGTTCATTGGCCGAAAGGACTTTTG
GTAGTGCTACACGTTTGTTTGCGCGATGATGGTGGTGGTCTAGCCCCATT
ATAGTTCTTGTGGACACCACTTGTGGTATGAAGTATTGTACAAGTCTGTC
AGCGGATTGTTGACCTTTGTACCTTACAGTTAAGCACTATTGCCCTGATG
TTTTTTTATTCTTGCGGACAGTCGGACAGGCTGGTGCGGATATGAAATGT
GCGAGTCTGGGAACACCCAAGCAGTACAAGCGAATTGTACGTAACACGAA
CTGAGACCCTCGGAATCCTAGGCAAGTTGTGGACAGCTACGGCAGAGGGC
GCTCGCTGATCACGCCCTGAAACGCCCGACTATTAAAAAAGTGATAATTG
ACCCAAATGCGTCAAGGATGAAACCGTCTATTCGCAGCTCTTGTCCTAAC
CTGCTTGAGCGATCTCTGCTGTTGTACTGGTGCACGCTTTTGGGTACGGG
GGGGGGCAGGATGCGCCGCCCTCCGCTTACGGGCCCACCGTCGACCTGCT
GTGCTCGTGGGGGCAGCACGAGCACCTGGTGGGAGCAGTCGTGGAGAGCC
TGAGGAAGGCGTTTTCCGCACCGGCGACCACGACGACGACGGCCATCGAC
GAGGCTGGAAGCGGCGAGATTGATGACGGTACGCACGGGGTAGCCGGGTG
CTGGTGTTGCGCGATCGGACGGAGGTTGTGTGTGCCTGGCATCTTTGGTC
AGCTATATGGGTTTAAATGTATGTTTTTTCTCAAGATCTGTTCCACGAGA
TTTTATTTTGACGGAGGGGAGCGAATTTGGTCGTGCGCCGTGGTTTTTCA
AACGTAAATGTCGTAAATGTGCTCTGGCTCTCCGCTCCACTCGGTGACAA
TCGAAGAAACGTTCCCACTCCGATTGATGGCCATCTTCGTGTCCATTGAA
GAGTTGTCGCGTGGTTGGTGCTGTAGCACAATATCAAGTACCCCGTTCCC
TTGAGTATTCCGCCTCGAGAGAGCCCTCGACAACACTTTGCCAACGTTTG
AGCGAAAATTTCTTACATACGTATGACCGTCGTGTTAACCCCCCCTCACC
CCCTACCCCCTATATCTCTGGGTGCGTGCGCCCCGGCCTTTCTTTGATAC
GAAAAAAAAAAGTTAAAGGTTCACGCGGAAAGCGCCGTCGACCCACCTCT
CGCAAGAAAGGGCATGACGAGGAAGGAGGAGAAGGGGAGGTGACGTGCAT
CCCCGCTCCCCTGGCCTTGAACATGCTCGGCCACCTGCTGGCGGGAGGCG
AGGGTCATCCGGCGACGGGGGCGGCCCGCGATGCCATCATGGCGAGCGAT
GAAGCGGTCGGCAGCTTGGAGGTACAGCAGATAGAGCGGAGGGTGGAAGA
GAGGGGTAGGTTAGGTCTAAGAGGGGGGTTGCTTTCCGTCAGGACAGGCG
GTGCAGGCGGGCAACGAGTACTGGGGGGCTAAGCTAGGGGTGCACTGCTG
TACATGCTATTGACTAAAGTTACTACTGTTGTCGAAGCAGTTGCTGCACA
ATTTGTTAGCTGTTGAACGAAGGTTTTGTCAGGCATGTACGCAGCAGTGT
GGCAGGTGATGCAGCGCTTGTAAAGTCCACCGGTCAGCTCTTCTCCGGTT
TATCTGAGGTCGAAACCCGCACGTCTCGTCTGCGTAGATTTTTGTACTAA
ATATTCTGTTCCATTTTCGCCCCCGCTGGCTGCATGATGCACCAATTCTG
TTCTGCCTGTCTCGTTGGCCCCGATTCCGAAACCCTCACGTCTGTTTCTC
TCTCCGCGCTAGATTTGTAACATATGCACCCCTACCTTTTATCCACACTA
AACCCGTCACTCTGTTGCTAAGTTTTACCTCTTTTTCCTGTGACGTTCTC
TCCATGGCTCGCTCCCCCGCCCCCAAGCGCAATTGACCCACCCAAGTTGA
TGAATTATCTATTCTCTCTGTCTTGCCCTCTTCTTCTTCTCTCGAACAGG
CGGTACTGGTCTTGGCACGCTCCGCCACAACCTCTCGCCTTTCGTCCTCA
CCGGTGTCCACCTCTTCCTCTCTCACCACCACCACCACTACCACCACCAT
CGCTACCACCACCAAACGTGAGGACAAAGAGAAGGTGTCCTTCCGCCGCC
GTTGCCCCGACGCCCTCCTCGTCCGCGCCTTGGAGACCCTGGGGCGGGTC
TACATGCACAGGGAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig11917:1086..3850- >mRNA_E-fasciculatus_F_contig11917.1503.1 ID=mRNA_E-fasciculatus_F_contig11917.1503.1|Name=mRNA_E-fasciculatus_F_contig11917.1503.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1698bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11917:1086..3850- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGGGCATCCTGAACCTAATCGCGAGCATCTGGGAGAGCATCCTGCC
CGCCCTTGAAAAGACCGTCAATGAGCCCTCGCTCGACCTCATCCAGCAGA
CGGTTACAGATGTCGGGCATCCTGAACCTAATCGCGAGCATCTGGGAGAG
CATCCTGCCCGCCCTTGAAAAGACCGTCAATGAGCCCTCGCTCGACCTCA
TCCAGCAGACGGTTACAGGCGAGGCGTTGTCGATCCTGTATAGGCGTTTT
TGTGGTCAGGAAGGGTGCCGGGCGGCGTTCATGCGAGTGGCGGGGCTTGC
GGGAGGTGACCTGGCCCCCGGCATGCTGGAGGACGTCGTGGTTGAGATGC
TCGCCCTGCCCGCGGCGAGGCGTTGTCGATCCTGTATAGGCGTTTTTGTG
GTCAGGAAGGGTGCCGGGCGGCGTTCATGCGAGTGGCGGGGCTTGCGGGA
GGTGACCTGGCCCCCGGCATGCTGGAGGACGTCGTGGTTGAGATGCTCGC
CCTGCCCGCGGATGCGCCGCCCTCCGCTTACGGGCCCACCGTCGACCTGC
TGTGCTCGTGGGGGCAGCACGAGCACCTGGTGGGAGCAGTCGTGGAGAGC
CTGAGGAAGGCGTTTTCCGCACCGGCGACCACGACGACGACGGCCATCGA
CGAGGCTGGAAGCGGCGAGATTGATGACGGATGCGCCGCCCTCCGCTTAC
GGGCCCACCGTCGACCTGCTGTGCTCGTGGGGGCAGCACGAGCACCTGGT
GGGAGCAGTCGTGGAGAGCCTGAGGAAGGCGTTTTCCGCACCGGCGACCA
CGACGACGACGGCCATCGACGAGGCTGGAAGCGGCGAGATTGATGACGTT
AAAGGTTCACGCGGAAAGCGCCGTCGACCCACCTCTCGCAAGAAAGGGCA
TGACGAGGAAGGAGGAGAAGGGGAGGTGACGTGCATCCCCGCTCCCCTGG
CCTTGAACATGCTCGGCCACCTGCTGGCGGGAGGCGAGGGTCATCCGGCG
ACGGGGGCGGCCCGCGATGCCATCATGGCGAGCGATGAAGCGGTCGGCAG
CTTGGAGTTAAAGGTTCACGCGGAAAGCGCCGTCGACCCACCTCTCGCAA
GAAAGGGCATGACGAGGAAGGAGGAGAAGGGGAGGTGACGTGCATCCCCG
CTCCCCTGGCCTTGAACATGCTCGGCCACCTGCTGGCGGGAGGCGAGGGT
CATCCGGCGACGGGGGCGGCCCGCGATGCCATCATGGCGAGCGATGAAGC
GGTCGGCAGCTTGGAGGCGGTACTGGTCTTGGCACGCTCCGCCACAACCT
CTCGCCTTTCGTCCTCACCGGTGTCCACCTCTTCCTCTCTCACCACCACC
ACCACTACCACCACCATCGCTACCACCACCAAACGTGAGGACAAAGAGAA
GGTGTCCTTCCGCCGCCGTTGCCCCGACGCCCTCCTCGTCCGCGCCTTGG
AGACCCTGGGGCGGGTCTACATGCACAGGGAGGCGGTACTGGTCTTGGCA
CGCTCCGCCACAACCTCTCGCCTTTCGTCCTCACCGGTGTCCACCTCTTC
CTCTCTCACCACCACCACCACTACCACCACCATCGCTACCACCACCAAAC
GTGAGGACAAAGAGAAGGTGTCCTTCCGCCGCCGTTGCCCCGACGCCCTC
CTCGTCCGCGCCTTGGAGACCCTGGGGCGGGTCTACATGCACAGGGAG back to top
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