mRNA_E-fasciculatus_F_contig11912.1501.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11912.1501.1
Unique NamemRNA_E-fasciculatus_F_contig11912.1501.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11912.1501.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.400e-30
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 QECLLYEDGLESEYYCADTCDDPDRCADNETCVLTGVECIRAPCPPVASCEATGN 165
            QECLLYEDGLESEYYCADTCDDPDRCADNETCVLT V CIRAPCPPVASCEAT N
Sbjct:  171 QECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASCEATEN 225
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BLAST of mRNA_E-fasciculatus_F_contig11912.1501.1 vs. uniprot
Match: H3H1D9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1D9_PHYRM)

HSP 1 Score: 57.0 bits (136), Expect = 4.520e-8
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 QECLLYE-DGLESEYYCADTCDDPDRCADNETCVLTGVECIRAPCPPVASCEATGN 165
            QEC +Y+ DG E   YCAD C +  RC +  TC L  V+CIRAPCPPVA C  T +
Sbjct:  504 QECRIYDADGSE---YCADVCAEG-RCPEGTTCELQEVQCIRAPCPPVAECTNTSS 555
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BLAST of mRNA_E-fasciculatus_F_contig11912.1501.1 vs. uniprot
Match: A0A662Y1D0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1D0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.150e-7
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 QECLLYE-DGLESEYYCADTCDDPDRCADNETCVLTGVECIRAPCPPVASC-EATGN 165
            Q C +YE DG E   YCAD C +  RC  + TC L  V+CIRAPCPPVA C ++TG 
Sbjct:  398 QTCQIYEPDGTE---YCADVCSEG-RCPQDSTCELQEVQCIRAPCPPVAVCKDSTGQ 450
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BLAST of mRNA_E-fasciculatus_F_contig11912.1501.1 vs. uniprot
Match: A0A329SZI3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329SZI3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.160e-7
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 QECLLYEDGLESEYYCADTCDDPDRCADNETCVLTGVECIRAPCPPVASCE-ATGN 165
            QEC +YE   +   YCAD C +  RC +  TC L  V+CIRAPCPPVA+C  ATG 
Sbjct:  652 QECRIYEP--DDSEYCADVCAEG-RCPEGFTCELQEVQCIRAPCPPVATCNNATGT 704
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BLAST of mRNA_E-fasciculatus_F_contig11912.1501.1 vs. uniprot
Match: W2QDR7_PHYPN (Uncharacterized protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QDR7_PHYPN)

HSP 1 Score: 51.6 bits (122), Expect = 8.140e-7
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 QECLLYE-DGLESEYYCADTCDDPDRCADNETCVLTGVECIRAPCPPVASCE 153
            QEC +YE DG +   YCAD C +  RC     C L  V+CIRAPCPP+A+C 
Sbjct:   82 QECRIYEPDGSD---YCADVCAEG-RCPKGSICELQEVQCIRAPCPPMATCN 129
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BLAST of mRNA_E-fasciculatus_F_contig11912.1501.1 vs. uniprot
Match: A0A3R7K578_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K578_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.860e-6
Identity = 32/58 (55.17%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 QECLLYE-DGLESEYYCADTCDDPDRCADNETCVLTGVECIRAPCPPVASC--EATGN 165
            QEC +Y  DG E   YCAD C +  RC    TC L  V+CIRAPCPPVA C  EAT  
Sbjct:  264 QECQIYAPDGSE---YCADVCIEG-RCPKGVTCELQEVQCIRAPCPPVAVCNNEATAQ 317
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BLAST of mRNA_E-fasciculatus_F_contig11912.1501.1 vs. uniprot
Match: A0A3F2RNQ6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNQ6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.910e-6
Identity = 32/58 (55.17%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 QECLLYE-DGLESEYYCADTCDDPDRCADNETCVLTGVECIRAPCPPVASC--EATGN 165
            QEC +Y  DG E   YCAD C +  RC    TC L  V+CIRAPCPPVA C  EAT  
Sbjct:  315 QECQIYAPDGSE---YCADVCIEG-RCPKGVTCELQEVQCIRAPCPPVAVCNNEATAQ 368
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11912.1501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LCN7_ECTSI6.400e-3094.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H3H1D9_PHYRM4.520e-853.57Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662Y1D0_9STRA1.150e-754.39Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A329SZI3_9STRA1.160e-753.57Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W2QDR7_PHYPN8.140e-751.92Uncharacterized protein n=14 Tax=Phytophthora para... [more]
A0A3R7K578_9STRA1.860e-655.17Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RNQ6_9STRA1.910e-655.17Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11912contigE-fasciculatus_F_contig11912:470..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue3.4e-24
Seed eggNOG ortholog2880.D8LCN7
EggNOG OGs2D2W6@1,2SP8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927702.1977167-CDS-E-fasciculatus_F_contig11912:469..6341622927702.1977167-CDS-E-fasciculatus_F_contig11912:469..634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11912 470..634 +
1695995656.9143636-CDS-E-fasciculatus_F_contig11912:469..6341695995656.9143636-CDS-E-fasciculatus_F_contig11912:469..634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11912 470..634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11912.1501.1prot_E-fasciculatus_F_contig11912.1501.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11912 470..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11912.1501.1

>prot_E-fasciculatus_F_contig11912.1501.1 ID=prot_E-fasciculatus_F_contig11912.1501.1|Name=mRNA_E-fasciculatus_F_contig11912.1501.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=55bp
QECLLYEDGLESEYYCADTCDDPDRCADNETCVLTGVECIRAPCPPVASC
EATGN
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mRNA from alignment at E-fasciculatus_F_contig11912:470..634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11912.1501.1 ID=mRNA_E-fasciculatus_F_contig11912.1501.1|Name=mRNA_E-fasciculatus_F_contig11912.1501.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11912:470..634+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAATGCCTACTGTACGAAGACGGACTGGAATCGGAGTACTACTGCGC
GGACACCTGTGACGACCCGGATCGGTGTGCGGACAACGAGACGTGCGTCC
TGACCGGGGTCGAGTGCATCCGCGCACCGTGCCCGCCCGTGGCATCATGT
GAAGCGACTGGAAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11912:470..634+

>mRNA_E-fasciculatus_F_contig11912.1501.1 ID=mRNA_E-fasciculatus_F_contig11912.1501.1|Name=mRNA_E-fasciculatus_F_contig11912.1501.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11912:470..634+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAATGCCTACTGTACGAAGACGGACTGGAATCGGAGTACTACTGCGC
GGACACCTGTGACGACCCGGATCGGTGTGCGGACAACGAGACGTGCGTCC
TGACCGGGGTCGAGTGCATCCGCGCACCGTGCCCGCCCGTGGCATCATGT
GAAGCGACTGGAAACCAGGAATGCCTACTGTACGAAGACGGACTGGAATC
GGAGTACTACTGCGCGGACACCTGTGACGACCCGGATCGGTGTGCGGACA
ACGAGACGTGCGTCCTGACCGGGGTCGAGTGCATCCGCGCACCGTGCCCG
CCCGTGGCATCATGTGAAGCGACTGGAAAC
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