|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig1191.1498.1 vs. uniprot
Match: D7FKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG2_ECTSI) HSP 1 Score: 194 bits (494), Expect = 7.260e-56 Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 3
Query: 294 MPNEYEAFFNKASRLGADATRGLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATESMDGDGAPDADDGEEDASSSC 626
MPNEYEAFFNKASRLGADATR LAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATE+ DGDGAPDADDGE+ +SSC
Sbjct: 1 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADDGED--ASSC 109
BLAST of mRNA_E-fasciculatus_F_contig1191.1498.1 vs. uniprot
Match: A0A835YIM3_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM3_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 4.330e-9 Identity = 32/65 (49.23%), Postives = 50/65 (76.92%), Query Frame = 3
Query: 360 LAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMG 554
++ EER + A+ GE+LEDEI+ AT LR+ AD MV +TGA++ + ++P+IDEI LK++Y+ V+G
Sbjct: 1 MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLG 65
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_002180.1 |
| Exons | 3 |
| Model size | 2008 |
| Cds size | 561 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1191.1498.1 >prot_E-fasciculatus_F_contig1191.1498.1 ID=prot_E-fasciculatus_F_contig1191.1498.1|Name=mRNA_E-fasciculatus_F_contig1191.1498.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=187bp
MHPGIVLHLAALPGIAHAFVGGWASFVVGTEQHRQQDRCADGESFARAGS
RFADSTRRPPVAAPAAARRGQQLRLMPNEYEAFFNKASRLGADATRGLAP
EERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEI
AVLKSKYKVVMGATESMDGDGAPDADDGEEDASSSC* back to topmRNA from alignment at E-fasciculatus_F_contig1191:4526..7503- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1191.1498.1 ID=mRNA_E-fasciculatus_F_contig1191.1498.1|Name=mRNA_E-fasciculatus_F_contig1191.1498.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1191:4526..7503- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGACAACACGTTGCTCCCACATCCCACCTCCCACACAGCCGCGCATCAG
CTTCGAGTACTAACAGGAATGCATCCAGGTATTGTGCTCCACCTCGCCGC
CCTCCCTGGAATAGCCCACGCCTTCGTGGGAGGATGGGCTTCTTTCGTGG
TCGGTACTGAGCAACATCGACAGCAGGACCGATGTGCTGATGGTGAGTCC
TTCGCGCGAGCGGGTAGCAGGTTTGCTGACTCCACGAGACGGCCTCCTGT
TGCGGCGCCTGCAGCAGCACGGAGGGGGCAGCAGCTCCGGCTTATGCCCA
ACGAGTACGAAGCGTTTTTCAACAAGGCGTCCAGGTTAGGGGCGGACGCA
ACGAGAGGCCTCGCACCCGAAGAGCGCGCACAGAGAGCTATGGAGGCAAG
TTGACGTACACATGCATCTTTGTCATCATCCATGGGAGCATGTACATGAC
GAAGGAAGGCGCCTTCCGCCCCCACCTCTCTGCACTGCCGACGGCCTTCT
TCCTGGGCGGAATAGTGCACGCCTTGAGAGGAAAGCCTTGTTTGCGGTAT
GTGTGATAGCATGGTAGAAGCGAAAAGGTACGTCGCACTGCTGTTGCACA
TGATGACACAACGTTCTCCCAAGTGTCCATTGTGTGAGTTTTCCCGACAT
TTGTGGTAAAACGGGGCACCAGGTTGTCATGCTGCTGTCTAGCTCTCTAC
TGCACCCCAGGGGACAGCAGCCGGCAGCATCCTGTGCTTCCTGCGCCAGG
CAAGAGCTGTACCTTTCAAGAAGGCCAGCGCTGGCAGGCACAGGTATTCC
AACGGAACGTCAGCTGCAGTTGGTCACGCAGTTGGAAATATTTCGAACCG
CTACTGCACACTCTCTCGTGTATTTTAATGCTGCTGCTGTGGTTACTTGC
TGTGGGTGCTGCCAGGGGGAGAAGCTCGAAGACGAAATCATTGAGATCGC
GACCGTGTTGCGAGAGAAAGCGGACGAAATGGTGGCCGAAACGGGCGCTA
TCAACTTCGAGATCATCCAGCCGATGATTGACGAGATCGCCGTCCTGAAA
AGCAAGTACAAGTGAGTGCCGAACACTACAAACAAAGAAGAAGACAAACC
AAACCGTCTGAACCGCCGGTGTTCGCGCAGTAAGAGGCAGGAAGAAGACA
TGCCGCGCTGGACGCGTTTGGGTCTACTGCTGTAGACATCGTTGAATACA
CATTCCATGTGAGGCGTCTCGTGCTGCTGCTGCTGCTGCTGGTTCTGTCA
GTCCCTCTGCTCTCATTATTGTTTGTCTCTTCGTCGTTTCCTATGTTGTA
CATTTCGTTTGGCGATCGAGTGATTTGAACCTCAGTGTCAGCGGTCTACG
CACACCTCGAAAGATTGCGCAAATTCGACGGTTGCACACCATCCCTGGTG
GGAGCCATTAGTCTAGCAATCATCGATCGGCAAGCTCGGACGCACGCACG
CGCTGCTCCACGCTCTCGCGCTAACTATAACCCTACTCGTGCTCTGTACG
GACCACTCCAGGGTGGTGATGGGGGCAACTGAGAGCATGGACGGAGACGG
AGCTCCGGATGCCGATGATGGAGAGGAGGATGCCAGCTCTTCTTGTTGAC
CTAGACCACTCCTGCTAGACGCCCATTGTCTCCTCTTCCCTTTTCGGGCC
GGAGGAAAGGCGTGCCCGTCGTGGTTGGCTCCCTCGCCTGAAGCATTTGG
AGAGGGGCGGGGGGGGGCTTCGGGCCGGACGAGGGGTGCAAGGTGCTAAC
CCCACCCCCTTGGGACTCGCTACAGTAGTACAGTAGTGCCGGGTTTCAGC
TTGTTTACTCTGATTGGGCTGCTGTCGTTTTGCGCCCTCTCTTGGAGCCT
TTGTGCTGCCGTCCGAAGGTTAGATAGAGGATGTGGGGTGGACGGTTCGC
GGTCTTGTTGGCGTGGTACTCACATGTTCCTTTTACTCGAGAGCTAGTTT
TGTGGTTTCATCCCGTCCTACTGTAGTGTTTTCGTTTCAAGAGTGTTCAT
CTGGAATGTGCAAGGAGTACTATTGAATATATATATCACTGCTGGTGAGT
CGCATGCAAATCGTCCGGGGTTGCTCCTGGCTTGATTGGCGTCGACATGA
GATGCGCAATAGAAATAACCCGGGTGTTAGCCCTTACCTTCCGTGTAGGC
GCCGTATGCTCTTCATTAGAAGGAAAATGCATGCATGTAGCACCTAGATA
GCAGGGCAGCATACGATGGATTCCCTTACAAGAAACGCACGCGAAGCAGT
TTGATGAGTGTGTGAAACTGCCGCAGGGCTGAACGTGCTTTGTCGCACTC
GGAAGCTTCGTTGTTCATGCTCGGTCCTTTCAGAATGGGGACACAACAAC
CATGCTCATGAGTGCCGAACACCTTGAACGTTACCCGTACAGCGGGCGGT
TCCTCCCTACACTGGTGTACAATTGTAGTGGTAACCGTTGGAAGTTGTGC
GTGTCATTGCTGTCCCGAGTTTCGTACAGTTGTACGTTTTCTACGAAGCA
GCTCGGTCGTAGAGGCGACTGCAGCTTGATGTTGGTTTGTGTGCCACGAA
GCCGTCGTGTTTGGCGTGTCAGCCCTTGAAATAGATCTGTCTGATTGTAG
TTGGACAAGCAAGATACAAACAGCAGTTTGGCAACCAGTAGAATGGTGAG
ATATTTTCTTGTGTTTGTTTTATATGAAGCGAGAACCACCAGGGCACGCG
TGGTTTCATCTTGCTACATACGGACACTGCTTCGGTGCCGGGTGTAGGGA
GTGTGCATCTCGAGACGATCGAACCCAGGCATTCCCGACGTCGCGCGCAG
CATGCCGATAAGTGAGCATAGAGCTGGTGGAGTCAGGACCAAGCCAGTTG
TTGGGAAAATAACCAAAGTTTCGACGCGACAAGAGACCTTGTACGTTATC
TTAGCCACGACTGCAGTGCCCCTTCTTCCGTCGTACATCGTTCAGTAACG
CTGGGTATACTTGACCTTTTTTGGTGGT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1191:4526..7503- >mRNA_E-fasciculatus_F_contig1191.1498.1 ID=mRNA_E-fasciculatus_F_contig1191.1498.1|Name=mRNA_E-fasciculatus_F_contig1191.1498.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1191:4526..7503- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATCCAGGTATTGTGCTCCACCTCGCCGCCCTCCCTGGAATAGCCCA
CGCCTTCGTGGGAGGATGGGCTTCTTTCGTGGTCGGTACTGAGCAACATC
GACAGCAGGACCGATGTGCTGATGGTGAGTCCTTCGCGCGAGCGGGTAGC
AGGTTTGCTGACTCCACGAGACGGCCTCCTGTTGCGGCGCCTGCAGCAGC
ACGGAGGGGGCAGCAGCTCCGGCTTATGCCCAACGAGTACGAAGCGTTTT
TCAACAAGGCGTCCAGGTTAGGGGCGGACGCAACGAGAGGCCTCGCACCC
GAAGAGCGCGCACAGAGAGCTATGGAGATGCATCCAGGTATTGTGCTCCA
CCTCGCCGCCCTCCCTGGAATAGCCCACGCCTTCGTGGGAGGATGGGCTT
CTTTCGTGGTCGGTACTGAGCAACATCGACAGCAGGACCGATGTGCTGAT
GGTGAGTCCTTCGCGCGAGCGGGTAGCAGGTTTGCTGACTCCACGAGACG
GCCTCCTGTTGCGGCGCCTGCAGCAGCACGGAGGGGGCAGCAGCTCCGGC
TTATGCCCAACGAGTACGAAGCGTTTTTCAACAAGGCGTCCAGGTTAGGG
GCGGACGCAACGAGAGGCCTCGCACCCGAAGAGCGCGCACAGAGAGCTAT
GGAGGGGGAGAAGCTCGAAGACGAAATCATTGAGATCGCGACCGTGTTGC
GAGAGAAAGCGGACGAAATGGTGGCCGAAACGGGCGCTATCAACTTCGAG
ATCATCCAGCCGATGATTGACGAGATCGCCGTCCTGAAAAGCAAGTACAA
GGGGAGAAGCTCGAAGACGAAATCATTGAGATCGCGACCGTGTTGCGAGA
GAAAGCGGACGAAATGGTGGCCGAAACGGGCGCTATCAACTTCGAGATCA
TCCAGCCGATGATTGACGAGATCGCCGTCCTGAAAAGCAAGTACAAGGTG
GTGATGGGGGCAACTGAGAGCATGGACGGAGACGGAGCTCCGGATGCCGA
TGATGGAGAGGAGGATGCCAGCTCTTCTTGTTGAGGTGGTGATGGGGGCA
ACTGAGAGCATGGACGGAGACGGAGCTCCGGATGCCGATGATGGAGAGGA
GGATGCCAGCTCTTCTTGTTGA back to top
|