mRNA_E-fasciculatus_F_contig11902.1494.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11902.1494.1
Unique NamemRNA_E-fasciculatus_F_contig11902.1494.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: A0A0S0GJY0_COSCS (Cytochrome b559 subunit beta n=68 Tax=Stramenopiles TaxID=33634 RepID=A0A0S0GJY0_COSCS)

HSP 1 Score: 91.7 bits (226), Expect = 1.030e-23
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            MTRNTNQPVAYPIFTFRWLA+HGLAVPTIFF+GAITSMQFIQR
Sbjct:    1 MTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 43
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: A0A3R5UAF7_9STRA (Cytochrome b559 subunit beta n=2 Tax=Eustigmatales TaxID=425074 RepID=A0A3R5UAF7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.760e-21
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            M R+TNQPV YPIFTFRWLA+HGLAVPTIFFLG ITSMQFIQR
Sbjct:    1 MIRSTNQPVVYPIFTFRWLAVHGLAVPTIFFLGGITSMQFIQR 43
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: A0A3R5TZL4_9STRA (Cytochrome b559 subunit beta n=1 Tax=Characiopsis acuta TaxID=2040456 RepID=A0A3R5TZL4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.160e-20
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            M R TNQPV YPIFTFRWLA+HGLA+PT+FFLGAIT+MQFIQR
Sbjct:    1 MIRGTNQPVVYPIFTFRWLAVHGLAIPTVFFLGAITAMQFIQR 43
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: A0A1C9CCM0_9RHOD (Cytochrome b559 subunit beta n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCM0_9RHOD)

HSP 1 Score: 84.0 bits (206), Expect = 1.190e-20
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MTRN-TNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            MTRN TNQP+ YPIFTFRWLA+HGL VPT+FFLGAITSMQFIQR
Sbjct:    1 MTRNNTNQPITYPIFTFRWLAIHGLGVPTVFFLGAITSMQFIQR 44
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: PSBF_PHATC (Cytochrome b559 subunit beta n=81 Tax=cellular organisms TaxID=131567 RepID=PSBF_PHATC)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-20
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            M +N NQPVAYPIFTFRWLA+HGLA+PT+FFLG IT+MQFIQR
Sbjct:    1 MAKNINQPVAYPIFTFRWLAIHGLAIPTVFFLGGITAMQFIQR 43
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: PSBF_GRATL (Cytochrome b559 subunit beta n=77 Tax=Rhodophyta TaxID=2763 RepID=PSBF_GRATL)

HSP 1 Score: 83.2 bits (204), Expect = 2.400e-20
Identity = 36/44 (81.82%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 MTR-NTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            MTR N+NQP++YPIFTFRWLA+HG+A+PT+FFLGAITSMQFIQR
Sbjct:    1 MTRGNSNQPISYPIFTFRWLAIHGIAIPTVFFLGAITSMQFIQR 44
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: PSBF_NEOYE (Cytochrome b559 subunit beta n=17 Tax=Eukaryota TaxID=2759 RepID=PSBF_NEOYE)

HSP 1 Score: 82.8 bits (203), Expect = 3.420e-20
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   10 NTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            N NQPV+YPIFTFRWLA+HGLA+PT+FFLGAITSMQFIQR
Sbjct:    5 NANQPVSYPIFTFRWLAIHGLAIPTVFFLGAITSMQFIQR 44
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: PSBF_EMIHU (Cytochrome b559 subunit beta n=11 Tax=Eukaryota TaxID=2759 RepID=PSBF_EMIHU)

HSP 1 Score: 82.4 bits (202), Expect = 4.660e-20
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:   10 NTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            NTNQPVAYPIFTFRWL +H LAVPT+FFLGAITSMQFIQR
Sbjct:    3 NTNQPVAYPIFTFRWLTIHALAVPTVFFLGAITSMQFIQR 42
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: A0A0D3M5G8_9STRA (Cytochrome b559 subunit beta n=3 Tax=cellular organisms TaxID=131567 RepID=A0A0D3M5G8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.660e-20
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    7 RNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            +NTNQPV YPIFTFRWLA+HGLAVPT+FFLG+IT+MQFIQR
Sbjct:    2 QNTNQPVVYPIFTFRWLAVHGLAVPTVFFLGSITAMQFIQR 42
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BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Match: C6KIP2_AURAN (Cytochrome b559 subunit beta n=3 Tax=Pelagomonadales TaxID=54409 RepID=C6KIP2_AURAN)

HSP 1 Score: 82.4 bits (202), Expect = 4.760e-20
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR 129
            M +  NQPVAYPIFTFRWLA+HGLAVPT+FFLGAITSMQFIQR
Sbjct:    1 MIKVLNQPVAYPIFTFRWLAVHGLAVPTVFFLGAITSMQFIQR 43
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11902.1494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S0GJY0_COSCS1.030e-2395.35Cytochrome b559 subunit beta n=68 Tax=Stramenopile... [more]
A0A3R5UAF7_9STRA5.760e-2188.37Cytochrome b559 subunit beta n=2 Tax=Eustigmatales... [more]
A0A3R5TZL4_9STRA1.160e-2083.72Cytochrome b559 subunit beta n=1 Tax=Characiopsis ... [more]
A0A1C9CCM0_9RHOD1.190e-2086.36Cytochrome b559 subunit beta n=2 Tax=Rhodophyta Ta... [more]
PSBF_PHATC1.660e-2081.40Cytochrome b559 subunit beta n=81 Tax=cellular org... [more]
PSBF_GRATL2.400e-2081.82Cytochrome b559 subunit beta n=77 Tax=Rhodophyta T... [more]
PSBF_NEOYE3.420e-2087.50Cytochrome b559 subunit beta n=17 Tax=Eukaryota Ta... [more]
PSBF_EMIHU4.660e-2090.00Cytochrome b559 subunit beta n=11 Tax=Eukaryota Ta... [more]
A0A0D3M5G8_9STRA4.660e-2085.37Cytochrome b559 subunit beta n=3 Tax=cellular orga... [more]
C6KIP2_AURAN4.760e-2086.05Cytochrome b559 subunit beta n=3 Tax=Pelagomonadal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11902contigE-fasciculatus_F_contig11902:450..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue3.6e-16
Seed eggNOG ortholog2880.D1J7D4
Preferred namepsbF
KEGG koko:K02708
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthetic electron transport chain
EggNOG OGs2E87T@1,2SEUE@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categorysignal anchor
Exons1
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927701.521267-CDS-E-fasciculatus_F_contig11902:449..5811622927701.521267-CDS-E-fasciculatus_F_contig11902:449..581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11902 450..581 -
1695995656.5391662-CDS-E-fasciculatus_F_contig11902:449..5811695995656.5391662-CDS-E-fasciculatus_F_contig11902:449..581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11902 450..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11902.1494.1prot_E-fasciculatus_F_contig11902.1494.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11902 450..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11902.1494.1

>prot_E-fasciculatus_F_contig11902.1494.1 ID=prot_E-fasciculatus_F_contig11902.1494.1|Name=mRNA_E-fasciculatus_F_contig11902.1494.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=44bp
MTRNTNQPVAYPIFTFRWLALHGLAVPTIFFLGAITSMQFIQR*
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mRNA from alignment at E-fasciculatus_F_contig11902:450..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11902.1494.1 ID=mRNA_E-fasciculatus_F_contig11902.1494.1|Name=mRNA_E-fasciculatus_F_contig11902.1494.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=132bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11902:450..581- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTAGAAACACGAATCAACCTGTAGCTTACCCTATTTTTACGTTTCG
TTGGCTTGCTCTCCATGGTTTAGCCGTTCCAACGATATTCTTTTTAGGCG
CAATTACATCAATGCAATTTATTCAACGATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11902:450..581-

>mRNA_E-fasciculatus_F_contig11902.1494.1 ID=mRNA_E-fasciculatus_F_contig11902.1494.1|Name=mRNA_E-fasciculatus_F_contig11902.1494.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=264bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11902:450..581- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTAGAAACACGAATCAACCTGTAGCTTACCCTATTTTTACGTTTCG
TTGGCTTGCTCTCCATGGTTTAGCCGTTCCAACGATATTCTTTTTAGGCG
CAATTACATCAATGCAATTTATTCAACGATAGATGACTAGAAACACGAAT
CAACCTGTAGCTTACCCTATTTTTACGTTTCGTTGGCTTGCTCTCCATGG
TTTAGCCGTTCCAACGATATTCTTTTTAGGCGCAATTACATCAATGCAAT
TTATTCAACGATAG
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