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Homology
BLAST of mRNA_E-fasciculatus_F_contig119.1488.1 vs. uniprot
Match: A0A7S2C742_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C742_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.640e-21 Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = 2
Query: 314 APFVHD-PDPRIYRPTVPAKVSTGCRFGVEVPATPSSQILVRREAEFDGEESRRGDATGKRRNGLAMMREEAHRHSHLQMLANVDISRRSELGEAICGRGKTIRKPLLYPQTVSHQQALTLEKKTGPSPAYDEPPRPRSAVDHHPWNQHMYLPYSRTRADF 793
AP++HD D R YRP V +FGV PA+ +S+ +V + +RG R L E+ R SH QM AN S++SE+GE + G G+TI KP+LYPQ ++HQ AL LEKK P +D+ P P + W+Q +LPYSRTR+ F
Sbjct: 30 APYIHDHSDSRCYRPEVTVDKR---QFGVTQPASVTSRTMV---------DVKRGTQEHGWRQKLEANTAESSR-SHRQMRANFRDSQKSEVGETLHGNGRTIDKPILYPQGLNHQMALALEKKAEPGLPFDKRP-PTANEPFEKWSQEQHLPYSRTRSHF 176
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-07_007170.2 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 814 |
| Cds size | 717 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig119.1488.1 >prot_E-fasciculatus_F_contig119.1488.1 ID=prot_E-fasciculatus_F_contig119.1488.1|Name=mRNA_E-fasciculatus_F_contig119.1488.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=239bp
MRLQGRPTSGRHHDQHHIRPAPSYHWEGFGRKNTKPPWFDCRLFDKDRRD
VGWVVKDFGAPSLADKPRREGAAPFVHDPDPRIYRPTVPAKVSTGCRFGV
EVPATPSSQILVRREAEFDGEESRRGDATGKRRNGLAMMREEAHRHSHLQ
MLANVDISRRSELGEAICGRGKTIRKPLLYPQTVSHQQALTLEKKTGPSP
AYDEPPRPRSAVDHHPWNQHMYLPYSRTRADFPERSKS* back to topmRNA from alignment at E-fasciculatus_F_contig119:28244..31261- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig119.1488.1 ID=mRNA_E-fasciculatus_F_contig119.1488.1|Name=mRNA_E-fasciculatus_F_contig119.1488.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3018bp|location=Sequence derived from alignment at E-fasciculatus_F_contig119:28244..31261- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAGGGCTCAAGACGACACACCTAGCCTATCGACTCGCGTCTCTGTCTCG
AGTTGAGGTGGAATACCACCCGGGCAGATCAACGACTCTTCAGGATTATG
CGCCTGCAAGGCCGCCCTACAAGTGGCCGCCACCACGACCAGCACCACAT
CAGGCCTGCCCCGTCGTACCACTGGGAAGGATTCGGCAGGAAGAACACCA
AACCACCGTGGTTCGACTGCCGGTTGTTCGACAAGGATAGGCGAGATGTA
GGATGGGTAGTGAAGGACTTCGGAGCACCTTCTTTGGCGGACAAGGTAAA
CTGGACTGGGTTACTGTTTTCACGCAAGAATTCCAGTCCAGGCGGTAGGG
CAAGTGGAGCAGGACGACGACGTGTGCGATGTGCCGATCGTTGCTGAGCA
AACGAGAATACCGACCATGAATATGGGAGACCCGTGTAGGTAGAAAAATA
AGAGGTTGGTGGTGTTCGACAATGCACCCGAACTTTCGCAAAGGGATGGA
ATTTTCAGTGACTCCCGGGCTCATCCGTCGTCATCCGTACACACGTATCT
ACGAACAACGCAAGCCCGCTTGGTACAATGGGTTATTGTCATCTTGTGCA
ACCCCCGACCCCTTCCTCCCTCCGGGTCAAATCAAGAGAGGGGGGAGATT
CCTAAAAAAATTCCGGCCGATGACAAGCAGATTCTACTTGAATAATGATC
CTGCAGATCAACCCTTGAGTGCATGTACAGAGGTCCACAGAAATATTGCA
TCACTCCCAACCGCTCTCTCCAGTGTACCGCTCGACTCTGGGGAGGGAGA
GAGCTCGTGGATTTCAGGCGCTCCCTGCCATGTGCTCCCAAAATGTACTA
CGACTTGTCTTGTTCTGCTGCTGGTTCTACGTCTGTCGTTTGCCTTGGAT
GCGCCATACCTATCTGTGGAATTCCAACAGCCTAGAAGAGAAGGAGCCGC
GCCTTTCGTGCATGACCCAGACCCGCGAATCTACCGGCCCACCGTACCCG
CCAAAGTTTCGACCGGCTGTCGCTTCGGGGTCGAAGTTCCGGCTACCCCA
TCGAGCCAAATTCTAGTCCGCAGAGAGGCGGAGTTCGATGGTGAAGAAAG
TAGGAGAGGGGACGCCACCGGCAAGAGGAGAAACGGGCTGGCAATGATGC
GGGAGGAAGCGCACAGGCACTCCCACCTGCAGATGCTCGCCAACGTGGAC
ATTTCCCGGCGGTCAGGTGCAACGGCTTGTCTGTTATGTGGTTTGAAACA
GCAGAAAGGGCAAATGCCATTGCCGGAAACTTGGAAGAGTGGTATGAGTT
TATCGTTTATGTTCAACCTTGAGGATAGTGCACGGCGGCCATGTAGTTAT
GACTCTTTCTCTCCGTGCCCCTCCAATGCGTTTTCGGTGCTGGTGTGCGG
TGCAGGAGTCGTTTCGCATGCCCACACAAGACGCGTTCGAAACTGAGGCG
TTGAGCCTTTTCCCGAGGGGGGTCGTCTGACTCCGTCACTTATATCATTC
AAGTTATTACGCTTTCCATTGTGACAGCATGTTGCGATATACTACTGAGC
TAGAGTTGCGTTTGGATGGCGCGATCATATGTGCGGGCTAGTAGAAACAT
ATTTGAGTCAGCAGAATGGACGCGGCAGTACTCTGGACATTGGCGAACAG
GGCGTACTCAAGGTGATGGTGTGGGCTCACCGTCCCCTCCGCTGTTCTCC
GTGTGCGACCTAACCAGGTCAACTAGATGTACCACAGAAATACCGCAGGT
ACTCCGAGAGGACCCAAAACATAGTTTCCTTCGAATATTATCAAAATGAA
ACAGTGATATTGCGGCTATTGACTAGTCTAAGGTGGTTTAGATATCGTGC
ATCGCAACCTACTGGCTAGGGTTCGACCGTAAACTAGCTCCACGGGTACC
AAATCTACCTAGAATGTAGGCTAAACGTGGGCGTAACTACGAGCTACATG
CGCTATCTCAAGATCTGGTATCTAACAACCTGCTTCAACTGAACTATGGC
AACCTCTAACGAGGCAGCGCCAACTCACAGACTAGGTGATCACAAGTTGT
TGCTCTTAGCAGCAGTTCAGTGTTCCTTCTCTGGGATTGGTCAACTTAAC
AATGTGCGAACACTTGAAACACCCGTTGAGACGAAGCCATGGGGGGCTCC
GTCACTGATTCAGGTAAATCCTAGGGTACACCCTAGCCCTCATCAAGCCA
TCGTGAAATGGAATCAATCCAAGTATTTGGCGCCCGTTCATGCTACCGGG
ACTAAAAAATAACGCTGGTGAATTGGTCTCTTTCCCTTCTTGTCGTCGGT
GGGTATAGAGCTTGGCGAGGCTATTTGCGGGCGAGGGAAGACGATACGGA
AGCCACTCCTCTACCCTCAGGTTAGTGGGTGTGCGTTAAGAAGCAAGTAT
CGCGCGGTTGTCTGTTTTTCGGTATTCCAGGTCGTGCAATGCTGCATTTT
AGTTGATTCTCGGACGTTTCAACCTATGTTTAGCCGTTGGGCGGACGCCC
CCCATTCTCCCCCCTCTCTTCTCTTCTTCCTAAACTCTCTCTTCATTGAA
CAATTTTTCCCCATGCTCGAACTTCACCCGATCTAGTTGCCCACAAGCGA
GGCGCAAGCTCTTCATGTCTGGCACGGCGATGGATAAGGGGGAGACACCG
ATGCTACCCCCTGCAATAGGATCCTGCCCACATAGCTCATGTAGCGTTCC
GAATGTAGGCAATAGGCGACGAACATGCAAGCCTCCGAGTCTTTCAAAGG
AAGCATACAAAAGCATTACCCCTATCAGCCAGTCACAACGGTGCTTAGCT
GAACGACATCCCTCCCTCACTTGTTTTCTTCGTCATCCGCTCAACAGACT
GTTTCGCATCAGCAGGCTCTGACGCTAGAGAAGAAGACAGGGCCAAGTCC
GGCTTACGACGAGCCGCCGCGGCCCCGTTCGGCGGTCGACCATCACCCAT
GGAACCAGCACATGTACCTTCCGTACTCGAGAACAAGAGCTGACTTCCCG
GAACGATCGAAGTCGTAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig119:28244..31261- >mRNA_E-fasciculatus_F_contig119.1488.1 ID=mRNA_E-fasciculatus_F_contig119.1488.1|Name=mRNA_E-fasciculatus_F_contig119.1488.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1434bp|location=Sequence derived from alignment at E-fasciculatus_F_contig119:28244..31261- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCCTGCAAGGCCGCCCTACAAGTGGCCGCCACCACGACCAGCACCA
CATCAGGCCTGCCCCGTCGTACCACTGGGAAGGATTCGGCAGGAAGAACA
CCAAACCACCGTGGTTCGACTGCCGGTTGTTCGACAAGGATAGGCGAGAT
GTAGGATGGGTAGTGAAGGACTTCGGAGCACCTTCTTTGGCGGACAAGAT
GCGCCTGCAAGGCCGCCCTACAAGTGGCCGCCACCACGACCAGCACCACA
TCAGGCCTGCCCCGTCGTACCACTGGGAAGGATTCGGCAGGAAGAACACC
AAACCACCGTGGTTCGACTGCCGGTTGTTCGACAAGGATAGGCGAGATGT
AGGATGGGTAGTGAAGGACTTCGGAGCACCTTCTTTGGCGGACAAGCCTA
GAAGAGAAGGAGCCGCGCCTTTCGTGCATGACCCAGACCCGCGAATCTAC
CGGCCCACCGTACCCGCCAAAGTTTCGACCGGCTGTCGCTTCGGGGTCGA
AGTTCCGGCTACCCCATCGAGCCAAATTCTAGTCCGCAGAGAGGCGGAGT
TCGATGGTGAAGAAAGTAGGAGAGGGGACGCCACCGGCAAGAGGAGAAAC
GGGCTGGCAATGATGCGGGAGGAAGCGCACAGGCACTCCCACCTGCAGAT
GCTCGCCAACGTGGACATTTCCCGGCGGTCAGCCTAGAAGAGAAGGAGCC
GCGCCTTTCGTGCATGACCCAGACCCGCGAATCTACCGGCCCACCGTACC
CGCCAAAGTTTCGACCGGCTGTCGCTTCGGGGTCGAAGTTCCGGCTACCC
CATCGAGCCAAATTCTAGTCCGCAGAGAGGCGGAGTTCGATGGTGAAGAA
AGTAGGAGAGGGGACGCCACCGGCAAGAGGAGAAACGGGCTGGCAATGAT
GCGGGAGGAAGCGCACAGGCACTCCCACCTGCAGATGCTCGCCAACGTGG
ACATTTCCCGGCGGTCAGAGCTTGGCGAGGCTATTTGCGGGCGAGGGAAG
ACGATACGGAAGCCACTCCTCTACCCTCAGAGCTTGGCGAGGCTATTTGC
GGGCGAGGGAAGACGATACGGAAGCCACTCCTCTACCCTCAGACTGTTTC
GCATCAGCAGGCTCTGACGCTAGAGAAGAAGACAGGGCCAAGTCCGGCTT
ACGACGAGCCGCCGCGGCCCCGTTCGGCGGTCGACCATCACCCATGGAAC
CAGCACATGTACCTTCCGTACTCGAGAACAAGAGCTGACTTCCCGGAACG
ATCGAAGTCGTAGACTGTTTCGCATCAGCAGGCTCTGACGCTAGAGAAGA
AGACAGGGCCAAGTCCGGCTTACGACGAGCCGCCGCGGCCCCGTTCGGCG
GTCGACCATCACCCATGGAACCAGCACATGTACCTTCCGTACTCGAGAAC
AAGAGCTGACTTCCCGGAACGATCGAAGTCGTAG back to top
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