mRNA_E-fasciculatus_F_contig11898.1484.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11898.1484.1
Unique NamemRNA_E-fasciculatus_F_contig11898.1484.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11898.1484.1 vs. uniprot
Match: A0A6H5JB91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB91_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.490e-53
Identity = 111/138 (80.43%), Postives = 112/138 (81.16%), Query Frame = 1 
Query:    1 HHAPPLFNTSRPRATLLTSATVSEAAALQTLQAANSLATLGGSGSSLLSPHNNALQPNTFSPLRRSNGLPRKRPRTSSHPYDRHNIDFINEIPDFRLGSPAPAGVSPIRAGKGNGNTIGDGGSLWGLSGVPPTGVIDP 414
            HHAPPL   SRPRATL  SA VSEAAA QTLQAANSLATLGG GS LLSP NNAL  N FS  RRSN LPRKRPRTSSH Y R N DFINE+PD  LGSPAPAGVSPIRA   NGNT GDGGSLWGLSGVPPTGVIDP
Sbjct:   93 HHAPPLLIASRPRATLA-SAAVSEAAAPQTLQAANSLATLGGVGS-LLSPQNNALHANAFSSGRRSNILPRKRPRTSSHLYGRDNNDFINEVPDVLLGSPAPAGVSPIRARNRNGNTSGDGGSLWGLSGVPPTGVIDP 228
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BLAST of mRNA_E-fasciculatus_F_contig11898.1484.1 vs. uniprot
Match: D7G643_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G643_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 8.370e-52
Identity = 103/133 (77.44%), Postives = 107/133 (80.45%), Query Frame = 1 
Query:   16 LFNTSRPRATLLTSATVSEAAALQTLQAANSLATLGGSGSSLLSPHNNALQPNTFSPLRRSNGLPRKRPRTSSHPYDRHNIDFINEIPDFRLGSPAPAGVSPIRAGKGNGNTIGDGGSLWGLSGVPPTGVIDP 414
            L NTSRPRATL ++A    AAA QTLQAANSLATLGG   SLLSP NN L  N FS +RRSN LPRKRPRTSSHPY R N DFINEIPD RLGSPAPAGVSPIRA K +GNT  DGGSLWG SGVPPTGVIDP
Sbjct:   54 LLNTSRPRATLASAAVSEAAAAPQTLQAANSLATLGGGVGSLLSPQNNVLHANIFSSVRRSNNLPRKRPRTSSHPYGRPNNDFINEIPDLRLGSPAPAGVSPIRARKWDGNTSRDGGSLWGQSGVPPTGVIDP 186
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11898.1484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB91_9PHAE1.490e-5380.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G643_ECTSI8.370e-5277.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11898contigE-fasciculatus_F_contig11898:3596..4012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue1.1e-45
Seed eggNOG ortholog2880.D7G643
EggNOG OGs29I80@1,2RRF3@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_005060.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size418
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927700.0519252-CDS-E-fasciculatus_F_contig11898:3595..40121622927700.0519252-CDS-E-fasciculatus_F_contig11898:3595..4012Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11898 3596..4012 +
1695995655.6754742-CDS-E-fasciculatus_F_contig11898:3595..40121695995655.6754742-CDS-E-fasciculatus_F_contig11898:3595..4012Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11898 3596..4012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11898.1484.1prot_E-fasciculatus_F_contig11898.1484.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11898 3596..4012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11898.1484.1

>prot_E-fasciculatus_F_contig11898.1484.1 ID=prot_E-fasciculatus_F_contig11898.1484.1|Name=mRNA_E-fasciculatus_F_contig11898.1484.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=139bp
HHAPPLFNTSRPRATLLTSATVSEAAALQTLQAANSLATLGGSGSSLLSP
HNNALQPNTFSPLRRSNGLPRKRPRTSSHPYDRHNIDFINEIPDFRLGSP
APAGVSPIRAGKGNGNTIGDGGSLWGLSGVPPTGVIDPS
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mRNA from alignment at E-fasciculatus_F_contig11898:3596..4012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11898.1484.1 ID=mRNA_E-fasciculatus_F_contig11898.1484.1|Name=mRNA_E-fasciculatus_F_contig11898.1484.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=417bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11898:3596..4012+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACCACGCACCGCCACTGTTCAACACTTCCCGCCCGCGAGCAACTCTTCT
TACCTCCGCAACCGTTTCGGAAGCCGCGGCTCTGCAGACACTGCAAGCGG
CCAACTCGCTCGCAACGCTGGGCGGCAGCGGCAGCTCTCTGTTGTCCCCG
CACAACAATGCTCTACAGCCCAACACATTCTCCCCGTTGAGGAGAAGCAA
CGGCCTGCCACGGAAACGCCCCCGAACCTCTTCACACCCATACGATCGAC
ACAATATCGATTTCATCAACGAGATCCCTGACTTTCGGCTGGGGTCGCCG
GCTCCAGCGGGCGTGTCTCCCATCCGTGCCGGCAAAGGGAACGGGAATAC
GATTGGTGACGGCGGTAGCCTCTGGGGGCTAAGCGGGGTTCCGCCAACTG
GGGTGATAGATCCAAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11898:3596..4012+

>mRNA_E-fasciculatus_F_contig11898.1484.1 ID=mRNA_E-fasciculatus_F_contig11898.1484.1|Name=mRNA_E-fasciculatus_F_contig11898.1484.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11898:3596..4012+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACCACGCACCGCCACTGTTCAACACTTCCCGCCCGCGAGCAACTCTTCT
TACCTCCGCAACCGTTTCGGAAGCCGCGGCTCTGCAGACACTGCAAGCGG
CCAACTCGCTCGCAACGCTGGGCGGCAGCGGCAGCTCTCTGTTGTCCCCG
CACAACAATGCTCTACAGCCCAACACATTCTCCCCGTTGAGGAGAAGCAA
CGGCCTGCCACGGAAACGCCCCCGAACCTCTTCACACCCATACGATCGAC
ACAATATCGATTTCATCAACGAGATCCCTGACTTTCGGCTGGGGTCGCCG
GCTCCAGCGGGCGTGTCTCCCATCCGTGCCGGCAAAGGGAACGGGAATAC
GATTGGTGACGGCGGTAGCCTCTGGGGGCTAAGCGGGGTTCCGCCAACTG
GGGTGATAGATCCAAGCCACCACGCACCGCCACTGTTCAACACTTCCCGC
CCGCGAGCAACTCTTCTTACCTCCGCAACCGTTTCGGAAGCCGCGGCTCT
GCAGACACTGCAAGCGGCCAACTCGCTCGCAACGCTGGGCGGCAGCGGCA
GCTCTCTGTTGTCCCCGCACAACAATGCTCTACAGCCCAACACATTCTCC
CCGTTGAGGAGAAGCAACGGCCTGCCACGGAAACGCCCCCGAACCTCTTC
ACACCCATACGATCGACACAATATCGATTTCATCAACGAGATCCCTGACT
TTCGGCTGGGGTCGCCGGCTCCAGCGGGCGTGTCTCCCATCCGTGCCGGC
AAAGGGAACGGGAATACGATTGGTGACGGCGGTAGCCTCTGGGGGCTAAG
CGGGGTTCCGCCAACTGGGGTGATAGATCCAAGC
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