mRNA_E-fasciculatus_F_contig11893.1479.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11893.1479.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI) HSP 1 Score: 265 bits (678), Expect = 1.230e-72 Identity = 200/407 (49.14%), Postives = 217/407 (53.32%), Query Frame = 2
Query: 8 RSYGGVSYVKLASPVSVPLELDLERFCSAYTGNAPAEDLGKEVDSLGG*VSPAPPTPAPAPPRRSPAFAXXXXXXXXXSERHRNPPPVQAAAVPVGRSGPLMTIRLTCSREKAGHRRH*HRRAETVSAKVEVAPAAVSAEASPRG*TGGRWDHWGKRRTXXXXXXXXXXXXXXXXXXXXPRGGKGWPKKRRTAVPLPAAGTAA------------RTMTR*RAATAXXXXXXXSASGLAAKSITSTLNKSNDASGRYDHRRSPLTGMGLSPLGGTGRGSGRLLSGG-GGGRRPELGRSDLRMADRTSAGLLAERELKRKRRQEIDDDNEKQLEEALAASKVEAFGPEGEAQEDEEADLAKAICLSQEGGGGG----CSDDWACVACTFINEAAMVLCGMCGTPMPEP 1177
RSYGGVSYVKL+SPVSVPLELDLERFCS YTGNAPAEDLGK+VDSL G P PR AFA R P S + + T S + V A+P RR XXXXX RG + +RR T +R R+ + +LNK N A G D RRSPL G+GLSPLGGTGRGSGRL SGG GGGRR +LGRSDLRMAD SAGLLA+R KRKRRQEIDDDNEKQLEEALAASK EAFGPEGEAQEDE ADLAKAICLSQEG CSD+WAC ACTFINEA+MV C MCGTPM EP
Sbjct: 882 RSYGGVSYVKLSSPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSLDGLGI------LPRAPRSPSAFASLRAAGTGLCAAIRAAPKSAXXXXXXXXXXXXXRASDDVSVDLFAREGWSSTSSLTSSGRDGVGEGGGGGSAAPGV----------NRRALGPLGETTNSSXXXXXIGDRRRGIRETVAERRXXXXXXXXXXXXXXXXXDRWADQDETTSRNRSHKLHNNVCLGPDGKVDYLDTLRSLNKPNSAGGLRDRRRSPLPGVGLSPLGGTGRGSGRLFSGGDGGGRRSDLGRSDLRMADHASAGLLAQRAFKRKRRQEIDDDNEKQLEEALAASKREAFGPEGEAQEDEAADLAKAICLSQEGXXXXXXXXCSDEWACAACTFINEASMVACVMCGTPMSEP 1272
BLAST of mRNA_E-fasciculatus_F_contig11893.1479.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE) HSP 1 Score: 191 bits (486), Expect = 2.520e-52 Identity = 132/188 (70.21%), Postives = 135/188 (71.81%), Query Frame = 3
Query: 1272 RVGAQRR-SGARGGGEEEAVVGLGDVRQRTAQDASPQPXXXXXXXXXXXXXXXHN-SPPKPLPEQPQATRVPRKGPLRARYELRGILHHLGRHAFTGHYVTDVREEGSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKGWKRYDDSVVSPVTEAEALGGEAQRTCYLCFYSLV-EDAE 1826
R G QRR SGARGGG++EAVV L DVRQRTAQDASPQP SPP EQPQA RVPRKGPLRARYELRGILHHLGRHAF GHYVTDVREE SG XXXXXXXXXXXXXX XXX G+GW RYDDSVVSPVTEAEALGGEAQRTCYLCFYSLV DAE
Sbjct: 124 RCGVQRRGSGARGGGDDEAVVALSDVRQRTAQDASPQPQPPAPLARGDDVKKKQQESPPXXXXEQPQAPRVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREERSGXXXXXXXXXXXXXXXSQGGKTEREXXX----------GRGWSRYDDSVVSPVTEAEALGGEAQRTCYLCFYSLVVADAE 301
BLAST of mRNA_E-fasciculatus_F_contig11893.1479.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE) HSP 1 Score: 195 bits (496), Expect = 5.110e-49 Identity = 130/188 (69.15%), Postives = 138/188 (73.40%), Query Frame = 1
Query: 148 GLGIPRAPHPRSRSPSAFASLRAAQTGLCDAIRAAPKPAAGTSGXXXXXXXXXXDDDSVDMFAREGWSSSSLTSSGRDGVGESRGGTGGGIGGSVAPGVNRRALGPLGETTNSSXXXXXXIGYRGRGIPETKAERRQRVAKEKENSSATAGGGDRCADHDEMTSRNRSRKLNNDVCLGPGGKVDYLNT 711
GLGIPR P RSPSAFASLRAA TGLC A R+ P PA G D SVD+FAREGWSS TSSG+ GVGE GG GGSVAPGVNRRALGPLGETTNSSXXXX IG R RGI ET AERR+RVAKEKEN SA +GGGDR AD DE TSRNRS KL+N+VCLGP GKVDYL+T
Sbjct: 1028 GLGIPRVP----RSPSAFASLRAAGTGLCAANRSGPNPAGGGG------EKRPTDGVSVDLFAREGWSS---TSSGQAGVGE------GGGGGSVAPGVNRRALGPLGETTNSSXXXXG-IGDRRRGIRETVAERRERVAKEKENCSAASGGGDRWADQDETTSRNRSHKLHNNVCLGPDGKVDYLDT 1195
BLAST of mRNA_E-fasciculatus_F_contig11893.1479.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.910e-12 Identity = 49/118 (41.53%), Postives = 56/118 (47.46%), Query Frame = 3
Query: 1464 QATRVPRKGPLRARYELRGILHHLGRHAFTGHYVTDVREEGSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKGWKRYDDSVVSPVTEAEALGGEAQRTCYLCFYSLVE 1817
+A R PR PL+ARY L +LHHLG HAF GHYV VR SGG G W+RYDDS V V E +A+GG A+ TCYL FY L E
Sbjct: 1270 EAPRPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVR---SGG-----------------------------------GAARWRRYDDSEVRDVAERDAVGGAARATCYLAFYELCE 1349 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11893.1479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11893.1479.1 >prot_E-fasciculatus_F_contig11893.1479.1 ID=prot_E-fasciculatus_F_contig11893.1479.1|Name=mRNA_E-fasciculatus_F_contig11893.1479.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=248bp RRPVLRRRVVRQAGVAGVGPAGAGPRAVLLGVHGQRPRRGPRQGGGLPWGback to top mRNA from alignment at E-fasciculatus_F_contig11893:825..3551+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11893.1479.1 ID=mRNA_E-fasciculatus_F_contig11893.1479.1|Name=mRNA_E-fasciculatus_F_contig11893.1479.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2727bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11893:825..3551+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11893:825..3551+ >mRNA_E-fasciculatus_F_contig11893.1479.1 ID=mRNA_E-fasciculatus_F_contig11893.1479.1|Name=mRNA_E-fasciculatus_F_contig11893.1479.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11893:825..3551+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |