prot_E-fasciculatus_F_contig11893.1480.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig11893.1480.1
Unique Nameprot_E-fasciculatus_F_contig11893.1480.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length124
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11893.1480.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.360e-19
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0 
Query:    4 GGGGCSDDWACVACTFINEAAMVLCGMCGTPMPEPXXXXXXXX--AENEMSSLAGDGGNGGSVDGKSEE 70
            GGGGCSD+WAC ACTFINEA++V+CGMCGTP+PEP          AE +MSS+AGD G GGS DGKS E
Sbjct:   56 GGGGCSDEWACAACTFINEASVVVCGMCGTPLPEPLPPSSPGTPPAETDMSSVAGDSG-GGSADGKSGE 123
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BLAST of mRNA_E-fasciculatus_F_contig11893.1480.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.130e-8
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0 
Query:    8 CSDDWACVACTFINEAAMVLCGMCGTPMPEP 38
            CSD+WAC ACTFINEA+MV C MCGTPM EP
Sbjct: 1242 CSDEWACAACTFINEASMVACVMCGTPMSEP 1272
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11893.1480.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KST6_9PHAE2.360e-1966.67RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7G2P5_ECTSI1.130e-880.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 10..34
e-value: 1.8E-5
score: 34.2
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 12..31
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 1..37
score: 8.75
NoneNo IPR availableGENE3D2.20.28.140coord: 7..58
e-value: 2.1E-7
score: 32.6
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 10..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11893contigE-fasciculatus_F_contig11893:2700..3071 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11893.1480.1mRNA_E-fasciculatus_F_contig11893.1480.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig11893 2700..3071 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig11893.1480.1 ID=prot_E-fasciculatus_F_contig11893.1480.1|Name=mRNA_E-fasciculatus_F_contig11893.1480.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
QEGGGGGCSDDWACVACTFINEAAMVLCGMCGTPMPEPPPPPGTPPAENE
MSSLAGDGGNGGSVDGKSEESRSTTEIRGKRRGRGRSGRGPGRCPAAHCA
RRFTATTATAARERRRRQEEATQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR001876Znf_RanBP2