mRNA_E-fasciculatus_F_contig11893.1480.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11893.1480.1
Unique NamemRNA_E-fasciculatus_F_contig11893.1480.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11893.1480.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.360e-19
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   10 GGGGCSDDWACVACTFINEAAMVLCGMCGTPMPEPXXXXXXXX--AENEMSSLAGDGGNGGSVDGKSEE 210
            GGGGCSD+WAC ACTFINEA++V+CGMCGTP+PEP          AE +MSS+AGD G GGS DGKS E
Sbjct:   56 GGGGCSDEWACAACTFINEASVVVCGMCGTPLPEPLPPSSPGTPPAETDMSSVAGDSG-GGSADGKSGE 123
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BLAST of mRNA_E-fasciculatus_F_contig11893.1480.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.130e-8
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   22 CSDDWACVACTFINEAAMVLCGMCGTPMPEP 114
            CSD+WAC ACTFINEA+MV C MCGTPM EP
Sbjct: 1242 CSDEWACAACTFINEASMVACVMCGTPMSEP 1272
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11893.1480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KST6_9PHAE2.360e-1966.67RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7G2P5_ECTSI1.130e-880.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11893contigE-fasciculatus_F_contig11893:2700..3071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog2880.D7G2P5
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.6516118-CDS-E-fasciculatus_F_contig11893:2699..30711622927699.6516118-CDS-E-fasciculatus_F_contig11893:2699..3071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11893 2700..3071 +
1695995655.3185718-CDS-E-fasciculatus_F_contig11893:2699..30711695995655.3185718-CDS-E-fasciculatus_F_contig11893:2699..3071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11893 2700..3071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11893.1480.1prot_E-fasciculatus_F_contig11893.1480.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11893 2700..3071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11893.1480.1

>prot_E-fasciculatus_F_contig11893.1480.1 ID=prot_E-fasciculatus_F_contig11893.1480.1|Name=mRNA_E-fasciculatus_F_contig11893.1480.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
QEGGGGGCSDDWACVACTFINEAAMVLCGMCGTPMPEPPPPPGTPPAENE
MSSLAGDGGNGGSVDGKSEESRSTTEIRGKRRGRGRSGRGPGRCPAAHCA
RRFTATTATAARERRRRQEEATQ*
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mRNA from alignment at E-fasciculatus_F_contig11893:2700..3071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11893.1480.1 ID=mRNA_E-fasciculatus_F_contig11893.1480.1|Name=mRNA_E-fasciculatus_F_contig11893.1480.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=372bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11893:2700..3071+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGGGCGGCGGCGGTGGCTGTAGCGACGACTGGGCGTGCGTGGCGTG
CACGTTCATCAACGAGGCTGCCATGGTCCTGTGCGGCATGTGCGGAACGC
CTATGCCAGAGCCACCGCCGCCTCCGGGCACCCCTCCTGCGGAGAACGAG
ATGAGCAGCCTCGCCGGCGACGGCGGCAATGGCGGGAGCGTCGACGGAAA
GAGCGAGGAGAGTCGGAGCACAACGGAGATCCGGGGCAAGAGGAGGGGGC
GAGGAAGAAGCGGTCGTGGGCCTGGGCGATGTCCGGCAGCGCACTGCGCA
AGACGCTTCACCGCAACCACCGCCACCGCCGCTCGCGAGAGGCGACGACG
CCAAGAAGAAGCAACACAATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11893:2700..3071+

>mRNA_E-fasciculatus_F_contig11893.1480.1 ID=mRNA_E-fasciculatus_F_contig11893.1480.1|Name=mRNA_E-fasciculatus_F_contig11893.1480.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11893:2700..3071+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGGGCGGCGGCGGTGGCTGTAGCGACGACTGGGCGTGCGTGGCGTG
CACGTTCATCAACGAGGCTGCCATGGTCCTGTGCGGCATGTGCGGAACGC
CTATGCCAGAGCCACCGCCGCCTCCGGGCACCCCTCCTGCGGAGAACGAG
ATGAGCAGCCTCGCCGGCGACGGCGGCAATGGCGGGAGCGTCGACGGAAA
GAGCGAGGAGAGTCGGAGCACAACGGAGATCCGGGGCAAGAGGAGGGGGC
GAGGAAGAAGCGGTCGTGGGCCTGGGCGATGTCCGGCAGCGCACTGCGCA
AGACGCTTCACCGCAACCACCGCCACCGCCGCTCGCGAGAGGCGACGACG
CCAAGAAGAAGCAACACAATAGCAGGAGGGCGGCGGCGGTGGCTGTAGCG
ACGACTGGGCGTGCGTGGCGTGCACGTTCATCAACGAGGCTGCCATGGTC
CTGTGCGGCATGTGCGGAACGCCTATGCCAGAGCCACCGCCGCCTCCGGG
CACCCCTCCTGCGGAGAACGAGATGAGCAGCCTCGCCGGCGACGGCGGCA
ATGGCGGGAGCGTCGACGGAAAGAGCGAGGAGAGTCGGAGCACAACGGAG
ATCCGGGGCAAGAGGAGGGGGCGAGGAAGAAGCGGTCGTGGGCCTGGGCG
ATGTCCGGCAGCGCACTGCGCAAGACGCTTCACCGCAACCACCGCCACCG
CCGCTCGCGAGAGGCGACGACGCCAAGAAGAAGCAACACAATAG
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