mRNA_E-fasciculatus_F_contig11889.1477.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11889.1477.1
Unique NamemRNA_E-fasciculatus_F_contig11889.1477.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11889.1477.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 3.240e-33
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:   49 QNRTMGEDLRSMICADGFVAVTSTLRHVISHHSSAKQMYLPAACDEQLETLGTERLGTQVFDIASWDDE*TVYRRWNNTADQPAEM 306
            +NRT+GEDLR MICADGFVA  STLRHV+SHHSSAK+MY P AC+E+L+TL TER GTQVF +ASW+D+ TVY+RWNNTADQ  EM
Sbjct:  442 KNRTIGEDLRYMICADGFVAARSTLRHVVSHHSSAKRMYFPMACNEKLKTLSTERPGTQVFGMASWNDQYTVYQRWNNTADQLTEM 527
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BLAST of mRNA_E-fasciculatus_F_contig11889.1477.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.000e-28
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:   49 QNRTMGEDLRSMICADGFVAVTSTLRHVISHHSSAKQMYLPAACDEQLETLGTERLGTQVFDIASWDDE*TVYRRWNNTADQPAEM 306
            +NRTM EDL SMICADGFVA  STL  V+SH SSAK+MY P +C+E+L+ LGTE  GTQVF +ASWD E TV+RRWNNTADQ AEM
Sbjct:  437 KNRTMEEDLLSMICADGFVAARSTLGRVVSHLSSAKRMYFPTSCNEELKNLGTEGPGTQVFGMASWDHEYTVFRRWNNTADQIAEM 522
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BLAST of mRNA_E-fasciculatus_F_contig11889.1477.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.770e-9
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   55 RTMGEDLRSMICADGFVAVTSTLRHVISHHSSAKQMYLPAACDEQLETLGTERLGTQVFDIA-SWDDE*TVYRRWNNTADQPAEM 306
            R+MGEDL+SM+CAD      S+L + +S+HS+A ++Y P  C+  L  L   R  T+V+ +        +VYR W NT +Q AEM
Sbjct:  308 RSMGEDLQSMLCADSLGLAKSSLVNFLSYHSTANRVYYPWRCNHDLRELARLRPKTKVYGLQLDRSGSYSVYRHWENTPEQRAEM 392
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11889.1477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7B3_9PHAE3.240e-3374.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L4_ECTSI1.000e-2870.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G610_ECTSI1.770e-941.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11889contigE-fasciculatus_F_contig11889:2235..4237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1206
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11889.1477.1prot_E-fasciculatus_F_contig11889.1477.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11889 2295..3247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.2522025-UTR-E-fasciculatus_F_contig11889:2234..22941622927699.2522025-UTR-E-fasciculatus_F_contig11889:2234..2294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11889 2235..2294 +
1695995655.069967-UTR-E-fasciculatus_F_contig11889:2234..22941695995655.069967-UTR-E-fasciculatus_F_contig11889:2234..2294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11889 2235..2294 +
1622927699.31842-UTR-E-fasciculatus_F_contig11889:3247..39511622927699.31842-UTR-E-fasciculatus_F_contig11889:3247..3951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11889 3248..3951 +
1695995655.105259-UTR-E-fasciculatus_F_contig11889:3247..39511695995655.105259-UTR-E-fasciculatus_F_contig11889:3247..3951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11889 3248..3951 +
1622927699.331644-UTR-E-fasciculatus_F_contig11889:3993..42371622927699.331644-UTR-E-fasciculatus_F_contig11889:3993..4237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11889 3994..4237 +
1695995655.1155763-UTR-E-fasciculatus_F_contig11889:3993..42371695995655.1155763-UTR-E-fasciculatus_F_contig11889:3993..4237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11889 3994..4237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.2675035-CDS-E-fasciculatus_F_contig11889:2294..24591622927699.2675035-CDS-E-fasciculatus_F_contig11889:2294..2459Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11889 2295..2459 +
1695995655.0820403-CDS-E-fasciculatus_F_contig11889:2294..24591695995655.0820403-CDS-E-fasciculatus_F_contig11889:2294..2459Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11889 2295..2459 +
1622927699.2924368-CDS-E-fasciculatus_F_contig11889:3214..32471622927699.2924368-CDS-E-fasciculatus_F_contig11889:3214..3247Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11889 3215..3247 +
1695995655.092584-CDS-E-fasciculatus_F_contig11889:3214..32471695995655.092584-CDS-E-fasciculatus_F_contig11889:3214..3247Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11889 3215..3247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11889.1477.1

>prot_E-fasciculatus_F_contig11889.1477.1 ID=prot_E-fasciculatus_F_contig11889.1477.1|Name=mRNA_E-fasciculatus_F_contig11889.1477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
MGEDLRSMICADGFVAVTSTLRHVISHHSSAKQMYLPAACDEQLETLGTE
RLGTQVFDIASWDDE*
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mRNA from alignment at E-fasciculatus_F_contig11889:2235..4237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11889.1477.1 ID=mRNA_E-fasciculatus_F_contig11889.1477.1|Name=mRNA_E-fasciculatus_F_contig11889.1477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2003bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11889:2235..4237+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCATCCCCTTTGTTGTCACCCGTGTGTTGGACGCCTGGATGCGGCCGCCA
GAACCGCACGATGGGGGAAGATCTCCGGTCCATGATCTGCGCGGACGGTT
TCGTGGCGGTGACATCGACGCTGAGACACGTCATTTCGCACCACTCGTCG
GCCAAGCAGATGTACCTTCCCGCAGCGTGCGACGAACAACTCGAGACTCT
TGGCACCGAGCGGCTAGGGACCCAGGTTAGTGCCGTAGGTTGGTGCTTAT
AGTATTTTTTCGCATCCCATGGACTGATTTCAAACCTTGAGTGAAGGTGC
AGAAAACGGTGGCGTTGGGACAGCCTCGTCGAGAGCATTTCCGAAATGAT
TGTATTTTTGACATCCGGCATCCTCTTCGTCGTGGAGAAATCGCCTGTGA
AATCGGCCCAGGGGGTGTGATGTCTTACGTGATGCAGCCTACTGTAAAGG
ATGCTGTGGAGGGGTGGAGATCGCCGTCACTTTGTGACGAATAGTTCAGG
ATTCAGGTTGTTAGGAATGGCGTTTTATGGAGGTGTTGTAGGGGCGAGGG
GAGAGGTAGGAAGATGGGAGGTAGTGTGCCAGGGTGGCGATGAAACCCGG
ACTGTTGGTGTATGTATGCTTCATTTTGTCTTGTCAGCCTGCGTGTCTCG
AACATTGAAGAACGAACTGCGGTGAACAATTGCTTCAAGAGTAAGGACGG
GGAAATCGTTTCCGTTTCTCCCCTCAATCTCGTGTCTACCGTCATAAATT
CCCCGCGGGTTTCAGGTTGACAGCCCTCCCTGCGCTTCTATTTCCCCTGT
ATTCCTCTCACAATCCTCATCTTCTGCAATATCGGATCCGTGCTGTCGTT
CAAACCCTCTTGACAGCAAAACAAAGGACTTCGATCTACGCCCGCTTGAA
GGCCTGAAGCGCTTGTGGTCCTTGTTTTTTTTCGCTTCCCGTGCTGTTGT
TTATGGTTTCCTCCCTTGCAACGCCTGAAGGTGTTTGACATAGCTTCGTG
GGACGATGAGTGAACCGTGTATCGGCGCTGGAATAACACGGCCGATCAGC
CAGCGGAGATGTGACCTTCGATGTAGTTAGCTCGAGCAGCGCACTGCCGG
CAGACCATAGCAGAACCGTACAACTGATTCATCCTTCCGGAGTGGAATCA
GGGTCATCAAGGGAGGATGCTCCAGATGGGAGTAGTAGCAGCCAGCTGTG
TCGTTTCCCAAGCTCGAATTTAGCCCACACAGCTGACGTGCTTTTCAACG
GACGAGTCCGGACGAGTCCGACGACCCTCAACAAAACAACAACACTTCAT
TTCAGTTTGTATACAACCGTACTCTGTAGAGCAAGATGTAGACAAACATG
CGAAATGTCTATAAGTTTTGTCAAATTTTGGCCAGGGAGTTGTGACTCAG
AGTGACGATGCGTTGTAGATTAAACTTGAGATTGTTATTCGTTCGAATAG
CGTACCGGTTGAAGTCACACTACCACACAGTTTGAAGTGGATCACAATAT
GTGGTGTTATTCTGTTTTGGCTTGGGTACAGACATACTGTAGACTTGGCA
CCACGACAGAAGCTTTTTTTGCGTCGAATCTCGACAACGTCTTGTTGCTT
GTTGTCATCGTCGAGCACACGTGCTTTTTAGGCCAGGGTGTTGTGTAGAT
TGTATCGCTGAGCTGCCTTTTCGGCTATTCGTTGTGTGCGTTTTTCATTC
TCTGTCCATCTTTCGCAACAAACGGCAGACTTTGAACCGCTTTTGCTGGG
CTGCTTTTCTTGGCACACTAGCAGTATTCGAAATCGGGTAGGATACTATC
CATGTCGGGCATGAAAGCGTTTGGTTTTGCGTCTAAGAGCCGCCGTGATG
TGTTTCGTTTCTTCTATCGCTCGATATGTGGCAGCCAGTCCAGCCTATGT
TGACCCTGTACATGATTGCTGGTAGCGCCGAGGGCTTGCGAAACGATAGG
TGTGAATGAAGCCTTGCGTACTCGAAGTGTGCAAGTGCTGCGCGTGGTCA
GAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11889:2235..4237+

>mRNA_E-fasciculatus_F_contig11889.1477.1 ID=mRNA_E-fasciculatus_F_contig11889.1477.1|Name=mRNA_E-fasciculatus_F_contig11889.1477.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11889:2235..4237+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGAAGATCTCCGGTCCATGATCTGCGCGGACGGTTTCGTGGCGGT
GACATCGACGCTGAGACACGTCATTTCGCACCACTCGTCGGCCAAGCAGA
TGTACCTTCCCGCAGCGTGCGACGAACAACTCGAGACTCTTGGCACCGAG
CGGCTAGGGACCCAGATGGGGGAAGATCTCCGGTCCATGATCTGCGCGGA
CGGTTTCGTGGCGGTGACATCGACGCTGAGACACGTCATTTCGCACCACT
CGTCGGCCAAGCAGATGTACCTTCCCGCAGCGTGCGACGAACAACTCGAG
ACTCTTGGCACCGAGCGGCTAGGGACCCAGGTGTTTGACATAGCTTCGTG
GGACGATGAGTGAGTGTTTGACATAGCTTCGTGGGACGATGAGTGA
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