mRNA_E-fasciculatus_F_contig11886.1475.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11886.1475.1
Unique NamemRNA_E-fasciculatus_F_contig11886.1475.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: D8LDV8_ECTSI (Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV8_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 1.270e-134
Identity = 193/200 (96.50%), Postives = 196/200 (98.00%), Query Frame = 1 
Query:    1 RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            +QVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKE+    G+
Sbjct:    9 KQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEMLETVGV 208
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: A0A7S3A473_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A473_9RHOD)

HSP 1 Score: 328 bits (841), Expect = 1.720e-111
Identity = 168/200 (84.00%), Postives = 175/200 (87.50%), Query Frame = 1 
Query:    1 RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            + VGYKSVDDYVTSGMVVGLGTGSTA FAVERLGE LKSGELKDIVAIPTSIRTKEQAE LDIPLVTLDTH VLDVAIDGADE D DLNLVKGRGGALLREKMVEV AKKFIVIVDDSK VPGLG+SGAMPVEVTPFCWE TLN +K   S+ GCDAKLR E  KPYVTDNDNYIVDLYF +PIKDAN A KE+    G+
Sbjct:   48 KVVGYKSVDDYVTSGMVVGLGTGSTAYFAVERLGEKLKSGELKDIVAIPTSIRTKEQAEGLDIPLVTLDTHPVLDVAIDGADEYDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKKVPGLGVSGAMPVEVTPFCWEFTLNKLKGAASVAGCDAKLRMEGDKPYVTDNDNYIVDLYFEEPIKDANAAAKEILEMVGV 247
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: A0A7S0T664_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T664_9RHOD)

HSP 1 Score: 327 bits (838), Expect = 8.490e-111
Identity = 166/200 (83.00%), Postives = 179/200 (89.50%), Query Frame = 1 
Query:    1 RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            + VGYKSVDDYVTSGMVVGLGTGSTA FAVERLG+ LKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH VLDVAIDGADEVD DLNLVKGRGGALLREKMVEV AKKFIVIVDDSK VPGLG+SGAMPVEVTPFC+EHTL  +K+ PS+ GCDAKLR +  KPYVTDNDNYIVDLYF  PI DAN+A +E+ +  G+
Sbjct:   64 KDVGYKSVDDYVTSGMVVGLGTGSTAYFAVERLGQKLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHPVLDVAIDGADEVDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVPGLGVSGAMPVEVTPFCYEHTLKRLKDAPSLAGCDAKLRMDGEKPYVTDNDNYIVDLYFEKPIADANKAAEEMINMVGV 263
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: A0A7S1TKQ2_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKQ2_9RHOD)

HSP 1 Score: 322 bits (825), Expect = 6.790e-109
Identity = 163/200 (81.50%), Postives = 178/200 (89.00%), Query Frame = 1 
Query:    1 RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            + VGYKSVDDYVTSGMVVGLGTGSTA FAVERLGE LKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH +LDVAIDGADEVD DLNLVKGRGGALLREKMVEV AKKFIVIVDDSK V GLGISGAMPVEVTPFC+EH+L  ++  PS+ GC+AKLR +  KPYVTDNDNYI+DLYF  PIKDAN+A +E+ +  G+
Sbjct:   59 KVVGYKSVDDYVTSGMVVGLGTGSTAYFAVERLGEKLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHPILDVAIDGADEVDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVTGLGISGAMPVEVTPFCYEHSLKRLQEAPSLAGCEAKLRMDGDKPYVTDNDNYIIDLYFKQPIKDANKAAEEMINMVGV 258
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: A0A6T5NRP6_HETAK (Ribose-5-phosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NRP6_HETAK)

HSP 1 Score: 321 bits (823), Expect = 9.090e-109
Identity = 159/200 (79.50%), Postives = 177/200 (88.50%), Query Frame = 1 
Query:    1 RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            +QVGYK++DDYVTSGMVVGLGTGSTAAFAVERLGEL+ SGELKDIVAIPTS+RTKEQAESL IPLVTLDTHS LDVAIDGADEVDP+LNLVKGRGGALLREKMVEVCAKKFIVIVDDSK V GLGI GAMPVEVTPFCWEH+L  +    S+KGC A+LR +  KPYVTDNDNYI+DLYF +PIKD  +A +E+ +  G+
Sbjct:   46 KQVGYKAIDDYVTSGMVVGLGTGSTAAFAVERLGELMASGELKDIVAIPTSVRTKEQAESLGIPLVTLDTHSDLDVAIDGADEVDPELNLVKGRGGALLREKMVEVCAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGV 245
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: A0A5J4YW31_PORPP (Ribose-5-phosphate isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW31_PORPP)

HSP 1 Score: 320 bits (821), Expect = 2.950e-108
Identity = 163/200 (81.50%), Postives = 174/200 (87.00%), Query Frame = 1 
Query:    1 RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            + VGYKSVDDYV+SGMVVGLGTGSTA FAVERLG+ L SGELKD+VAIPTS+RTKEQAESL+IPLVTLDTH  LDVAIDGADEVDP LNLVKGRGGALLREKMVEV A KFIVIVDDSK V GLGISGAMPVEVTPFCWE TLN +K   S+ GCDAKLR  DGKPYVTDNDNYIVDLYFT+PIKDA  A  E+ S  G+
Sbjct:   61 KVVGYKSVDDYVSSGMVVGLGTGSTAYFAVERLGQKLASGELKDVVAIPTSLRTKEQAESLNIPLVTLDTHPKLDVAIDGADEVDPALNLVKGRGGALLREKMVEVMADKFIVIVDDSKLVDGLGISGAMPVEVTPFCWEFTLNRLKQAKSLTGCDAKLRMADGKPYVTDNDNYIVDLYFTEPIKDAQAAATEINSMVGV 260
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: A0A7S0ZKY8_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKY8_9RHOD)

HSP 1 Score: 318 bits (815), Expect = 3.380e-107
Identity = 162/198 (81.82%), Postives = 174/198 (87.88%), Query Frame = 1 
Query:    7 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            VGYKS+DDYVTSGMVVGLGTGSTA FAVERLG+ L SGELKDIVAIPTSIRTKEQAESL+IPLVTLDTH VLDVAIDGADEVDPDLNLVKGRGGALLREKMVEV AKKFIVIVDDSK V GLGISGAMPVEVTPFCWEH+L  +K   S+ GCDAKLR +  KPYVTDNDNYIVDLYF  PIKDA +A  ++ +  G+
Sbjct:   73 VGYKSIDDYVTSGMVVGLGTGSTAYFAVERLGQKLASGELKDIVAIPTSIRTKEQAESLNIPLVTLDTHPVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKMVEGLGISGAMPVEVTPFCWEHSLKRLKECESLAGCDAKLRMDGEKPYVTDNDNYIVDLYFETPIKDAEKAAADMINMVGV 270
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: K8Z9G7_NANGC (Ribose-5-phosphate isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z9G7_NANGC)

HSP 1 Score: 309 bits (791), Expect = 9.080e-104
Identity = 157/201 (78.11%), Postives = 171/201 (85.07%), Query Frame = 1 
Query:    1 RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGC-DAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            +QVGYKSVDDYV SGMVVGLGTGSTAAFAVERLG  LK+GELKDIVAIPTSIRTKEQAESL +PLVTLD+HSVLDVAIDGADEVDP LNLVKGRGGALLREKMVEVCAKKFIVIVDDSK VPGLG++GAMPVE+TPFC EHT  T+  LP +KG    KLR +  KPYVTDNDNYIVDLY+TDPI D     + +    G+
Sbjct:   54 KQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKAGELKDIVAIPTSIRTKEQAESLGVPLVTLDSHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGV 254
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: A0A2V3J0N4_9FLOR (Ribose-5-phosphate isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0N4_9FLOR)

HSP 1 Score: 307 bits (786), Expect = 1.170e-103
Identity = 160/200 (80.00%), Postives = 171/200 (85.50%), Query Frame = 1 
Query:    1 RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            +  GYK+VDDYV SGMVVGLGTGSTAAFAVERLG+ L SGEL DIVAIPTSIRTKEQAESL IPLV LDTH VLDVAIDGADEVDPDLNLVKGRGGALLREKMVEV AKKFIVIVD+SK V GLGISGAMPVEVTPFC++  L+ + NLPSIKGC AKLR +  KPYVTDNDNYIVDL+F  PIKDA  A  E+ S  GI
Sbjct:   12 KLTGYKAVDDYVKSGMVVGLGTGSTAAFAVERLGQKLSSGELSDIVAIPTSIRTKEQAESLGIPLVQLDTHPVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVQAKKFIVIVDESKLVDGLGISGAMPVEVTPFCYQFNLDRLLNLPSIKGCTAKLRMDADKPYVTDNDNYIVDLFFDTPIKDAALAASEIRSLVGI 211
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BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Match: A0A6T6DAD6_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6DAD6_9RHOD)

HSP 1 Score: 307 bits (786), Expect = 9.240e-103
Identity = 156/201 (77.61%), Postives = 172/201 (85.57%), Query Frame = 1 
Query:    1 RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLR-EEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI 600
            +  GYK+VDDYVTSGMVVGLGTGSTA FAVERLG+ L SGELKDIVAIPTSIRTK+QAE L IPLVTLDTH +LDVAIDGADEVD +LNLVKGRGGALLREKMVEV AKKFIVIVDDSK V GLGISGAMPVE+TPFCW+H+LN + N P++ GC AKLR + +G PYVTDNDNYIVDLYF  PIKD   A +E+ S  GI
Sbjct:   72 QAAGYKAVDDYVTSGMVVGLGTGSTAYFAVERLGQKLASGELKDIVAIPTSIRTKDQAEGLKIPLVTLDTHPILDVAIDGADEVDSELNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVSGLGISGAMPVEITPFCWQHSLNRLLNAPTLAGCTAKLRMDANGNPYVTDNDNYIVDLYFDTPIKDPKAAAEEINSMVGI 272
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11886.1475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDV8_ECTSI1.270e-13496.50Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus si... [more]
A0A7S3A473_9RHOD1.720e-11184.00Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus ma... [more]
A0A7S0T664_9RHOD8.490e-11183.00Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A7S1TKQ2_9RHOD6.790e-10981.50Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A6T5NRP6_HETAK9.090e-10979.50Ribose-5-phosphate isomerase n=1 Tax=Heterosigma a... [more]
A0A5J4YW31_PORPP2.950e-10881.50Ribose-5-phosphate isomerase n=1 Tax=Porphyridium ... [more]
A0A7S0ZKY8_9RHOD3.380e-10781.82Ribose-5-phosphate isomerase n=1 Tax=Timspurckia o... [more]
K8Z9G7_NANGC9.080e-10478.11Ribose-5-phosphate isomerase n=3 Tax=Monodopsidace... [more]
A0A2V3J0N4_9FLOR1.170e-10380.00Ribose-5-phosphate isomerase n=1 Tax=Gracilariopsi... [more]
A0A6T6DAD6_9RHOD9.240e-10377.61Ribose-5-phosphate isomerase n=1 Tax=Compsopogon c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11886contigE-fasciculatus_F_contig11886:142..3990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.7
Seed ortholog evalue6.5e-105
Seed eggNOG ortholog2880.D8LDV8
Preferred nameRPI2
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0006139,GO:0006213,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009116,GO:0009119,GO:0009163,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009941,GO:0009987,GO:0010033,GO:0010228,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019253,GO:0019438,GO:0019685,GO:0022414,GO:0030243,GO:0030244,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034357,GO:0034404,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046108,GO:0046109,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0061458,GO:0071704,GO:0072527,GO:0072528,GO:0080167,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.ribose-5-phosphate isomerase activity
EggNOG OGsCOG0120@1,KOG3075@2759
EC5.3.1.6
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size600
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11886.1475.1prot_E-fasciculatus_F_contig11886.1475.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11886 142..3990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.054953-CDS-E-fasciculatus_F_contig11886:141..2291622927699.054953-CDS-E-fasciculatus_F_contig11886:141..229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 142..229 +
1695995654.945635-CDS-E-fasciculatus_F_contig11886:141..2291695995654.945635-CDS-E-fasciculatus_F_contig11886:141..229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 142..229 +
1622927699.0699034-CDS-E-fasciculatus_F_contig11886:564..6931622927699.0699034-CDS-E-fasciculatus_F_contig11886:564..693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 565..693 +
1695995654.9584439-CDS-E-fasciculatus_F_contig11886:564..6931695995654.9584439-CDS-E-fasciculatus_F_contig11886:564..693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 565..693 +
1622927699.0833237-CDS-E-fasciculatus_F_contig11886:1193..12911622927699.0833237-CDS-E-fasciculatus_F_contig11886:1193..1291Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 1194..1291 +
1695995654.970293-CDS-E-fasciculatus_F_contig11886:1193..12911695995654.970293-CDS-E-fasciculatus_F_contig11886:1193..1291Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 1194..1291 +
1622927699.0990493-CDS-E-fasciculatus_F_contig11886:2441..25091622927699.0990493-CDS-E-fasciculatus_F_contig11886:2441..2509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 2442..2509 +
1695995654.9855673-CDS-E-fasciculatus_F_contig11886:2441..25091695995654.9855673-CDS-E-fasciculatus_F_contig11886:2441..2509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 2442..2509 +
1622927699.1134157-CDS-E-fasciculatus_F_contig11886:3038..31141622927699.1134157-CDS-E-fasciculatus_F_contig11886:3038..3114Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 3039..3114 +
1695995655.000461-CDS-E-fasciculatus_F_contig11886:3038..31141695995655.000461-CDS-E-fasciculatus_F_contig11886:3038..3114Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 3039..3114 +
1622927699.1256058-CDS-E-fasciculatus_F_contig11886:3849..39901622927699.1256058-CDS-E-fasciculatus_F_contig11886:3849..3990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 3850..3990 +
1695995655.0168886-CDS-E-fasciculatus_F_contig11886:3849..39901695995655.0168886-CDS-E-fasciculatus_F_contig11886:3849..3990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11886 3850..3990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11886.1475.1

>prot_E-fasciculatus_F_contig11886.1475.1 ID=prot_E-fasciculatus_F_contig11886.1475.1|Name=mRNA_E-fasciculatus_F_contig11886.1475.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=200bp
RQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPT
SIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLR
EKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLP
SIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEVTSKQGI
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mRNA from alignment at E-fasciculatus_F_contig11886:142..3990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11886.1475.1 ID=mRNA_E-fasciculatus_F_contig11886.1475.1|Name=mRNA_E-fasciculatus_F_contig11886.1475.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3849bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11886:142..3990+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCAGGTGGGGTACAAGTCGGTGGACGACTACGTGACGAGCGGGATGGT
GGTCGGCCTCGGCACGGGCTCCACGGCTGCCTTCGCCGGTAGGAGGGGTT
GCCGCCGTTTCTATAACCGTTGCTGTCTTGGTTGCTATTGCGTCCCTAAA
ACTGAAATTTAGTAAACCCCCTAACCAAAAACAACACATCGAACAATATT
TTATCCAATGAAGGAAATGTTGTGCCCCTGAGGTCGTATCGTCGTCGCCG
TCGTACTTTCGTCGGAGCGGAGCTGTCAGTGCCTGATTTGTAGCCCCATT
TTGAAGGGATCCTCGACGCAGCCTTGCTTGAGTAGAGACGACATCCGTTG
TTCAAAGACTTGGCCTAGCGTAATCCTCATCCCCTTCGGGCGCGCGCTAC
CTTCCCCCCCCGCTGTCTCTCAGTGGAGCGCCTTGGGGAGCTGCTTAAGA
GCGGTGAGCTGAAGGACATCGTGGCCATCCCCACGTCCATCCGCACCAAG
GAGCAGGCGGAGTCCCTTGACATCCCTCTCGTGACGCTCGACACCCACTC
CGGTACGTTGTTACGACTCATTCGCATATCACATCCTTTTTCGTGCTGCT
ATTTTCCACGTGTCAAGTCTCGACACCGCAGCTGTCCTGTGAGTTTTGTA
TGCGGTAGCCTTGCAGTGTAGCTACCGTGGTTGCCCGTAACGCGATTTTG
TTTTCAAGCTCAGGAACACGACGACCCCACCCGGGCTTGATATCAACTTC
TGCTGCTATACATGGGCATCATGCATGTTTGTAGGTGTTTTTTATTGTTG
GCATCGACCGCGCTAACCTGTTGAGGAATGCAAATTCGTTGTTCTCAGTG
CGGTTGAAAACCAGAGATAGATTCCTTTTTAAGGGCGATGATCTGTTCGT
GTGTGTGTGCATTTTACATTGAAAACTCCTCACTCTCAGTGTGGTTGCAA
ACCAGAAAATGCAAACAGGAAAGGCTTCCTTTTAAACGCCACGATCTGTT
CGTGTGCGCGCGTGCGTTTTATCCCATTATTGCCGGTGTTCCGTTGATCC
AGTGCTCGACGTCGCCATCGACGGCGCCGACGAGGTGGACCCTGACCTGA
ACCTCGTCAAGGGCCGCGGCGGAGCCCTCTTGAGGGAGAAGATGGTGGAG
GTGAGAGCAGACCACATCGGTCCGGACTGAGTAGGGTTGGGGCGGAGCCC
TGTTGAGGAAGAAGGTGGTGGGATTGAAATTGAAATCAGACCTTTAACCG
ATCCCATCTGAGATGGGTTGGCGTGTTGAGCTAAACGATCGTCGTCGTCG
TAGCGGAGGACGTCCACCCCGCTCCACAGGAACAATGCCCTCCGTCGTCA
CGTTTGACGCTTTACGGAATAGATTCGTTTCCGCGGAGGGCTAGTTCTGC
CCTCTCCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTC
TCTCTCCTCTGCCATTCTACTTAAGGAGGGAGGTACATACAATCTATAGG
TAACGTTCCGGACTACCCGGGACCACTTGTTGTGCACAGCAGTAGCGGGT
GGGTCACCGGAACGGAATGGCTGCGGAAATCGTGGTAGATCCCTGGGGAG
ATTGTTGTGGCCGTGCAGTTTTGAAACTCGACACGAGCAAGAGGTCCCCG
GATGAGGTCTGGAGACGGACAGTCATGGCCCTGGCGATCGCATTGGCGAT
GTCGTCGGCGGAGGGGTTGGCCGACGGCCGGGCGTAGCCCGGATCGAAGA
GCTGGTGACCCAGAGGGTAGCAGCAAAACTGGCCGAGATCCAGTTGAGGC
AACAAGGCGAAGAGCTGAGGACAGACAACGTCCGGAGCGGGAACGGGGAA
CAAGGGGTACGCCACCAGCGACACGCGGGGCGCCCGTCGGCCAACCCCTC
CGCCGACGACATCGCCAATGCGATCGCCAGCGCCATGACTGTCCGTCTCC
AGACCTCATCCGGGGACCTCGACGACAAGTCTTGCACAGGAATGCGTGTC
GGTTCGTTTTATTGTGGAGTGCTACTGGCCGATGGTTGTTCTCCCTCGTG
GACTGCCGTGCCTTTTCGTCTTGTGCTGCAGCACCTCACTCTCACTTTTT
CACCTTTTGTCGCTTGCGCCAAGCTCAAGGCGAAGCACAAGCGTCGTGTG
AGGTGATCCAATCAACGCCCTTGGAATCGCGGCGATATCTCTCTGCAGCA
CGTGCATCCTCCTCCTCCTCGTCGGGTTGTCCTTCGGTGTGACCCCCTCT
CCCCCGCCCGCGCTTCTTTTTTCTGTCCCTCCATCTGCTCGTATGCTCAG
GTCTGCGCGAAGAAGTTCATCGTTATCGTTGACGACTCCAAGTTCGTGCC
CGGTCTGGGCATCTCTGGGTGAGGAGGGAGGGAGGGAGGCAAAGAAAAGG
GTTATGGGCGGAGGATGAGACAGCAGCAGCAACAGTGTAGGGGGATGATA
CGCGGAAAGGAAGGAAGGGGCATGTACTGTAGCCGTCATGCCTCGGGGGT
GGGGGAGAGAGAAGCGGGACCGATCAAGTTTCCTACGGCACACGATCTAA
GCGAACGTAGGAGCCGAGAACCACTGGGCCACAAGAAACGCGAGACACGC
CTCCGACTCGTCGTGCTTGCTCATCGTGTCTTCATTTTGAGCGTGTTCTC
CGTTACGGTGTTTTAAAATAGAGGCTGCTCAGCGATCCTGTCGCTCTGGG
CACTTGGCCATTGATAGTCAGCCTGCTTTGCGCTTTTTTACGTTTTGGTA
TTGCGGATGCGTGGTTCACCATACTAGTGGCTGTATCACCACGGCGGCAT
CTCTTGTGTCTGCTGAGGTTCGCGGTGTCACGAATCGCTGCCCTCTGCTT
CTCGCGCGTGCTTTGACACGCGGGGATTGCTGGCTTTTGTTTTTCAGGGC
GATGCCGGTGGAGGTCACCCCGTTCTGCTGGGAACACACCCTCAACACCG
TCAAGAACCTGCCCAGCATCAAGGTCAGTGCAATCAAATCGAAACTGCTG
CCGGGAACGACTCAACGAGCTTGGTTCGACGCCAAGCAACGAGGCACACA
CGCATACGAACAGCTCGCCGTGCATTGTCTTGTCCGGAGAGGGGCACACC
AGGCTGCGAGTGGCGGTTTGTCTTGTGAATGCGCTCGTAAGAATGACGCC
ACAAAAGCAATCCGTAGTTGTTCGCACGGATGGAGCAACAGAGGTGCTGA
GAGCATGTTCGCGCGGAGTACCACGCAGCACCGGTTCGTGGGCCGTGCGC
GTGTTTGGGCACGTCCTGGTTGGCACTTCGAAACTGCAGTAGCTTGCGTG
GTTCCTTCGGCGGGTAAACGAGTGTTTAGTCATGTGACTTATCTCTCACC
CACTGCTGTTGGTTGGTCACGAAGGAATGAATCTGGTGCGTATGGACTTT
GAAGTGCCACGACTTGAAGCTCCGCGATGCGATACGTGGCAAGGAAAAGT
GGAGTCGGGAGAGGGCCGTGTTCATATTTCAACGATGTGTGTACTGATTG
TTGGTCCTGGACATGTCTTTCCCGCAGATGCCTTGCCTGGTACTAGGCGT
GAAAGTGCACGAATCGCCTTGGGATACGTTAGTAAATGCACGCACTTCGC
AAATCATCTGGTATCTCGAATTCCATTGCTTGTCCCGAACCGTCCTCGAA
TTGATCGATGCCTCCCCCCCCCCCCTGATTTTGACCTGTTGTTGTTGATG
TACGACAGGGCTGCGACGCCAAGCTGCGCGAAGAGGACGGCAAGCCGTAC
GTGACGGACAACGACAACTACATCGTCGACCTGTACTTCACTGACCCCAT
CAAGGACGCCAACCAGGCGGGCAAGGAGGTAACGTCCAAACAAGGAATA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11886:142..3990+

>mRNA_E-fasciculatus_F_contig11886.1475.1 ID=mRNA_E-fasciculatus_F_contig11886.1475.1|Name=mRNA_E-fasciculatus_F_contig11886.1475.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1200bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11886:142..3990+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCAGGTGGGGTACAAGTCGGTGGACGACTACGTGACGAGCGGGATGGT
GGTCGGCCTCGGCACGGGCTCCACGGCTGCCTTCGCCGCGGCAGGTGGGG
TACAAGTCGGTGGACGACTACGTGACGAGCGGGATGGTGGTCGGCCTCGG
CACGGGCTCCACGGCTGCCTTCGCCGTGGAGCGCCTTGGGGAGCTGCTTA
AGAGCGGTGAGCTGAAGGACATCGTGGCCATCCCCACGTCCATCCGCACC
AAGGAGCAGGCGGAGTCCCTTGACATCCCTCTCGTGACGCTCGACACCCA
CTCCGTGGAGCGCCTTGGGGAGCTGCTTAAGAGCGGTGAGCTGAAGGACA
TCGTGGCCATCCCCACGTCCATCCGCACCAAGGAGCAGGCGGAGTCCCTT
GACATCCCTCTCGTGACGCTCGACACCCACTCCGTGCTCGACGTCGCCAT
CGACGGCGCCGACGAGGTGGACCCTGACCTGAACCTCGTCAAGGGCCGCG
GCGGAGCCCTCTTGAGGGAGAAGATGGTGGAGTGCTCGACGTCGCCATCG
ACGGCGCCGACGAGGTGGACCCTGACCTGAACCTCGTCAAGGGCCGCGGC
GGAGCCCTCTTGAGGGAGAAGATGGTGGAGGTCTGCGCGAAGAAGTTCAT
CGTTATCGTTGACGACTCCAAGTTCGTGCCCGGTCTGGGCATCTCTGGGT
CTGCGCGAAGAAGTTCATCGTTATCGTTGACGACTCCAAGTTCGTGCCCG
GTCTGGGCATCTCTGGGGCGATGCCGGTGGAGGTCACCCCGTTCTGCTGG
GAACACACCCTCAACACCGTCAAGAACCTGCCCAGCATCAAGGGCGATGC
CGGTGGAGGTCACCCCGTTCTGCTGGGAACACACCCTCAACACCGTCAAG
AACCTGCCCAGCATCAAGGGCTGCGACGCCAAGCTGCGCGAAGAGGACGG
CAAGCCGTACGTGACGGACAACGACAACTACATCGTCGACCTGTACTTCA
CTGACCCCATCAAGGACGCCAACCAGGCGGGCAAGGAGGTAACGTCCAAA
CAAGGAATAGGCTGCGACGCCAAGCTGCGCGAAGAGGACGGCAAGCCGTA
CGTGACGGACAACGACAACTACATCGTCGACCTGTACTTCACTGACCCCA
TCAAGGACGCCAACCAGGCGGGCAAGGAGGTAACGTCCAAACAAGGAATA
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