mRNA_E-fasciculatus_F_contig11880.1474.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11880.1474.1
Unique NamemRNA_E-fasciculatus_F_contig11880.1474.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: D8LNC2_ECTSI (COP9 signalosome complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNC2_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 5.900e-153
Identity = 220/227 (96.92%), Postives = 224/227 (98.68%), Query Frame = 1 
Query:    7 QVMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEAGDPERLQV 687
            +VMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFT+CYTQLLGYTKGAV+QNVGEKGVNSVLDYVSSSNDW LLKGFYEQTLDTLR HKNNRLWFKCNLKLGHLMY+VGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQ EREWDQACTAFFQSFKNYDEAGDPERLQV
Sbjct:   79 EVMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTDCYTQLLGYTKGAVSQNVGEKGVNSVLDYVSSSNDWGLLKGFYEQTLDTLREHKNNRLWFKCNLKLGHLMYDVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQ-EREWDQACTAFFQSFKNYDEAGDPERLQV 304
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BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: K3X4W8_GLOUD (COP9 signalosome complex subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4W8_GLOUD)

HSP 1 Score: 251 bits (640), Expect = 3.400e-78
Identity = 119/228 (52.19%), Postives = 170/228 (74.56%), Query Frame = 1 
Query:    1 MGQVMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEAGDPERLQ 684
            + QV+  + ++  WGFKALK+++KL F++    E    Y +LLGYTK  VT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+  +N RLWFK NLKLG+L+YE+G+  RL +I+KELL +C+     D+D  + VK+ TQLLE+++LQI M++ Q+D KKL  +YE+A +  S V HP+++  I ECGGKMHM Q R+WD+A + FF+ FK+YDEAG+P RLQ
Sbjct:   56 LSQVLTMQVDKTDWGFKALKRIVKLHFELGQHDEAMRQYEELLGYTKSDVTRNVGEKGINSILDFVSTSKNWEILQRFYETTLETLKEARNERLWFKTNLKLGNLLYEIGDFSRLSKIVKELLSSCE-----DEDGEDGVKKNTQLLEVYALQIQMYTSQKDNKKLVSIYEKALRTKSGVAHPKIIGVIRECGGKMHMMQ-RDWDKARSDFFEGFKSYDEAGEPRRLQ 277
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BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: H3GHW8_PHYRM (COP9 signalosome complex subunit 2 n=15 Tax=Peronosporaceae TaxID=4777 RepID=H3GHW8_PHYRM)

HSP 1 Score: 250 bits (639), Expect = 4.800e-78
Identity = 121/228 (53.07%), Postives = 170/228 (74.56%), Query Frame = 1 
Query:    1 MGQVMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEAGDPERLQ 684
            +GQV+A + EQ  WGFKALK+ +KLLF++         Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S  W++L+ FYE TL+TL+  +N RLWFK ++KLG+L+YE+G+  RL +IIKELL +C      D+D  + V++ +QLLE+++LQI M++ Q+D KKL  +YE+A +  S V HP+++  I ECGGKM+M Q REWD+A + FF  FK+YDEAG+P RLQ
Sbjct:   56 LGQVLALQTEQSDWGFKALKRTVKLLFELQRHDAAMRTYEELLGYTKTAVTRNVGEKGINSILDFVSTSKSWDVLQKFYETTLETLKEARNERLWFKTSVKLGNLLYEIGDFSRLSKIIKELLASCS-----DEDADDGVRKNSQLLEVYALQIQMYTAQKDNKKLVSIYEKALRTKSGVAHPKIIGVIHECGGKMYMMQ-REWDKARSDFFSGFKSYDEAGEPRRLQ 277
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: A0A8K1FC14_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC14_PYTOL)

HSP 1 Score: 246 bits (629), Expect = 1.520e-76
Identity = 117/222 (52.70%), Postives = 168/222 (75.68%), Query Frame = 1 
Query:   19 QEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEAGDPERLQ 684
            Q E Q  WGFKALK+++KL F+++ +    + Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+  +N RLWFK NLKLG+L+YE+G+  RL +I++EL+ +C+ E     D  + VK+ +QLLE+++LQI M++ Q+D KKL  +YE+A +  S V HP+++  I ECGGKM++ Q REW++A   FF+SFKNYDEAG+P RLQ
Sbjct:   62 QNESQSDWGFKALKRIVKLHFELNRYDAAIKRYEELLGYTKSAVTRNVGEKGINSILDFVSTSKNWEILQRFYETTLETLKEARNERLWFKTNLKLGNLLYEIGDFTRLTKIVRELIASCEEE-----DSEDGVKKNSQLLEVYALQIQMYTSQKDNKKLVSIYEKALRTKSGVAHPKIMGVIHECGGKMYLMQ-REWEKARVDFFESFKNYDEAGEPRRLQ 277
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: F0WS67_9STRA (COP9 signalosome complex subunit 2 n=3 Tax=Albugo TaxID=65356 RepID=F0WS67_9STRA)

HSP 1 Score: 243 bits (621), Expect = 2.350e-75
Identity = 117/226 (51.77%), Postives = 168/226 (74.34%), Query Frame = 1 
Query:    7 QVMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEAGDPERLQ 684
            +V+  ++E+  WGFKALK+++KL F    +      Y +LLGYTK +VT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+  +N RLWFK NLKLG+L+YE+ +  RL +IIKELL +C+     D+D  + VK+ TQLLE+++LQI M++ ++D KKL  +YE+A +  S V HP+++  I ECGGKMHM Q  +WD+A + FF++FKNYDEAG+P RLQ
Sbjct:   56 EVLELQQEESDWGFKALKRIVKLHFDKKEYDNAILRYEELLGYTKSSVTRNVGEKGINSILDHVSTSKNWEILQRFYETTLETLKEARNERLWFKTNLKLGNLLYEIEDYARLTKIIKELLLSCE-----DEDSEDGVKKNTQLLEVYALQIQMYTSEKDNKKLMSMYEKALRTKSGVAHPKIIGVIRECGGKMHMMQG-DWDKARSDFFEAFKNYDEAGEPRRLQ 275
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BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: A0A804QK19_MAIZE (PCI domain-containing protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804QK19_MAIZE)

HSP 1 Score: 234 bits (598), Expect = 5.330e-72
Identity = 113/228 (49.56%), Postives = 167/228 (73.25%), Query Frame = 1 
Query:    7 QVMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVS--SSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEAGDPERLQ 684
            QV++ E E+  WGFKALKQ +KL +K+  ++E  + Y ++L Y K AVT+N  EK +N+++D+VS  +S +++LL+ FY+ TL  L   KN RLWFK NLKL  + +++GE GR+ +I+KEL K+C+ E   DD      K+GTQLLE+++++I M++  ++ KKL+E+Y+RA  I SA+PHPR++  I ECGGKMHM  ER+WD+A T FF++FKNYDEAG+P R+Q
Sbjct:   52 QVVSMEPEKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGSDDQ-----KKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMA-ERQWDEAATDFFEAFKNYDEAGNPRRIQ 273
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BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: A0A0P1AF91_PLAHL (COP9 signalosome complex subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AF91_PLAHL)

HSP 1 Score: 234 bits (596), Expect = 7.320e-72
Identity = 114/208 (54.81%), Postives = 160/208 (76.92%), Query Frame = 1 
Query:   40 WGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEA 663
            WGFKALK+++KLLF++    E    Y +LLGYTK AVT+NVGEKG+NS+LD+VS+S +W +L+ FYE TL+TL+  +N RLWFK ++KLG+L+YE+G+  RL++IIKELL +C +EG+ DD     V+R +QLLE+++LQI M++ Q+D KKL  +YE+A +  S V HP+++  I ECGGKM+M Q REWD+A + FF  FK+YDEA
Sbjct:   68 WGFKALKRIVKLLFELQRHDEAMRRYEELLGYTKTAVTRNVGEKGINSILDFVSTSKNWEILQQFYETTLETLKEARNERLWFKTSVKLGNLLYEIGDFTRLRKIIKELLASC-SEGDADD----GVRRNSQLLEVYALQIQMYTAQKDNKKLVSIYEKALRTKSGVAHPKIIGVIHECGGKMYMMQ-REWDKARSDFFSGFKSYDEA 269
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: A0A1X7VTW3_AMPQE (COP9 signalosome complex subunit 2 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VTW3_AMPQE)

HSP 1 Score: 233 bits (595), Expect = 1.420e-71
Identity = 117/225 (52.00%), Postives = 166/225 (73.78%), Query Frame = 1 
Query:    7 QVMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEAGDPERL 681
            QV+  EEE+G WGFKALKQMMKL F++    E   CY +LL Y +GAVT+N  EK +NS+LDY+S+S   +LL+ FYE TL+ L+  +N+RLWFK N+KLG L ++ GE  +L RIIK+L  +C+    G+DD    VK+GTQLLE+++L+I M++ Q++ KKL+ +YE++ +I SA+PHP ++  I ECGGKMH++ E E+ Q+ T FF++FKNYDE+G P RL
Sbjct:   51 QVLELEEEKGEWGFKALKQMMKLHFRLRQNNEMMNCYKKLLTYMRGAVTRNYSEKSINSILDYISTSEQADLLQDFYEATLEALKDARNDRLWFKTNVKLGKLCFDQGEFNKLTRIIKQLHLSCQT-AEGEDD----VKKGTQLLEVYALEIQMYTAQKNNKKLKALYEQSLRIKSAIPHPLIMGVIRECGGKMHLR-EGEFSQSHTDFFEAFKNYDESGSPRRL 269
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: UPI00083BC4D0 (COP9 signalosome complex subunit 2-like n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BC4D0)

HSP 1 Score: 233 bits (594), Expect = 2.610e-71
Identity = 114/221 (51.58%), Postives = 165/221 (74.66%), Query Frame = 1 
Query:   19 QEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEAGDPERL 681
            Q E +G WGFKALKQM+K+ F +  ++E   CY ++L Y + AVT+N GEK +NS+L+Y S+SN   LL+ FYE TLD L+  KN+RLWFK N KLG + ++ GE G+L +IIK+L +AC N+  GD+D    V++G QLLEI++L+I +++ +++ K LRE+YERA KI SA+PHP +++TI ECGGKMH++ E E+++A   FF++FKNYDE+G P R+
Sbjct:   58 QGESKGEWGFKALKQMIKINFSLGHYEEMMRCYREMLVYIRSAVTKNQGEKAINSILEYTSTSNQKELLQEFYEMTLDALKDAKNDRLWFKTNCKLGKVYFDSGEFGKLLKIIKQLKQACVNK-EGDED----VQKGNQLLEIYALEIQIYTEKKNNKLLRELYERALKIRSAIPHPMIMSTIRECGGKMHLRSE-EYERAYADFFEAFKNYDESGSPRRI 272
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Match: A0A453ERR0_AEGTS (Uncharacterized protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453ERR0_AEGTS)

HSP 1 Score: 229 bits (585), Expect = 2.870e-71
Identity = 112/227 (49.34%), Postives = 162/227 (71.37%), Query Frame = 1 
Query:   10 VMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAVTQNVGEKGVNSVLDYVS--SSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNLKLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIFSLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQEREWDQACTAFFQSFKNYDEAGDPERLQ 684
            V+  E E+  WGFKALKQ +KL +K+  ++E  + Y ++L Y K AVT+N  EK +N+++D+VS  +S  +NLL+ FY+ TL  L   KN RLWFK NLKL  + +++GE GR+ +I+KEL K+C+ E   DD      K+GTQLLE+++++I M++  ++ KKL+E+Y+RA  I SA+PHPR++  I ECGGKMHM  ER+W  A T FF++FKNYDEAG+P R+Q
Sbjct:   51 VVRMEPEKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQHFNLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQKEDGSDDQ-----KKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMA-ERQWADAATDFFEAFKNYDEAGNPRRIQ 271
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11880.1474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC2_ECTSI5.900e-15396.92COP9 signalosome complex subunit 2 n=2 Tax=Ectocar... [more]
K3X4W8_GLOUD3.400e-7852.19COP9 signalosome complex subunit 2 n=1 Tax=Globisp... [more]
H3GHW8_PHYRM4.800e-7853.07COP9 signalosome complex subunit 2 n=15 Tax=Perono... [more]
A0A8K1FC14_PYTOL1.520e-7652.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WS67_9STRA2.350e-7551.77COP9 signalosome complex subunit 2 n=3 Tax=Albugo ... [more]
A0A804QK19_MAIZE5.330e-7249.56PCI domain-containing protein n=2 Tax=Zea mays Tax... [more]
A0A0P1AF91_PLAHL7.320e-7254.81COP9 signalosome complex subunit 2 n=1 Tax=Plasmop... [more]
A0A1X7VTW3_AMPQE1.420e-7152.00COP9 signalosome complex subunit 2 n=1 Tax=Amphime... [more]
UPI00083BC4D02.610e-7151.58COP9 signalosome complex subunit 2-like n=1 Tax=Ni... [more]
A0A453ERR0_AEGTS2.870e-7149.34Uncharacterized protein n=3 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11880contigE-fasciculatus_F_contig11880:434..3950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.9
Seed ortholog evalue2.3e-122
Seed eggNOG ortholog2880.D8LNC2
Preferred nameCOPS2
KEGG koko:K12176
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG5159@1,KOG1464@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome component (PCI) domain
Ec32 orthologEc-04_004400.1
Exons6
Model size687
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11880.1474.1prot_E-fasciculatus_F_contig11880.1474.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11880 434..3950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927698.9256992-CDS-E-fasciculatus_F_contig11880:433..5631622927698.9256992-CDS-E-fasciculatus_F_contig11880:433..563Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 434..563 +
1695995654.882949-CDS-E-fasciculatus_F_contig11880:433..5631695995654.882949-CDS-E-fasciculatus_F_contig11880:433..563Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 434..563 +
1622927698.9471538-CDS-E-fasciculatus_F_contig11880:831..9651622927698.9471538-CDS-E-fasciculatus_F_contig11880:831..965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 832..965 +
1695995654.8951235-CDS-E-fasciculatus_F_contig11880:831..9651695995654.8951235-CDS-E-fasciculatus_F_contig11880:831..965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 832..965 +
1622927698.965333-CDS-E-fasciculatus_F_contig11880:1989..20961622927698.965333-CDS-E-fasciculatus_F_contig11880:1989..2096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 1990..2096 +
1695995654.903589-CDS-E-fasciculatus_F_contig11880:1989..20961695995654.903589-CDS-E-fasciculatus_F_contig11880:1989..2096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 1990..2096 +
1622927698.984097-CDS-E-fasciculatus_F_contig11880:2732..28611622927698.984097-CDS-E-fasciculatus_F_contig11880:2732..2861Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 2733..2861 +
1695995654.913669-CDS-E-fasciculatus_F_contig11880:2732..28611695995654.913669-CDS-E-fasciculatus_F_contig11880:2732..2861Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 2733..2861 +
1622927698.9986432-CDS-E-fasciculatus_F_contig11880:3380..34771622927698.9986432-CDS-E-fasciculatus_F_contig11880:3380..3477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 3381..3477 +
1695995654.924979-CDS-E-fasciculatus_F_contig11880:3380..34771695995654.924979-CDS-E-fasciculatus_F_contig11880:3380..3477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 3381..3477 +
1622927699.0117636-CDS-E-fasciculatus_F_contig11880:3860..39501622927699.0117636-CDS-E-fasciculatus_F_contig11880:3860..3950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 3861..3950 +
1695995654.9368446-CDS-E-fasciculatus_F_contig11880:3860..39501695995654.9368446-CDS-E-fasciculatus_F_contig11880:3860..3950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11880 3861..3950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11880.1474.1

>prot_E-fasciculatus_F_contig11880.1474.1 ID=prot_E-fasciculatus_F_contig11880.1474.1|Name=mRNA_E-fasciculatus_F_contig11880.1474.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=229bp
MGQVMAQEEEQGIWGFKALKQMMKLLFKMSAFQEFTECYTQLLGYTKGAV
TQNVGEKGVNSVLDYVSSSNDWNLLKGFYEQTLDTLRRHKNNRLWFKCNL
KLGHLMYEVGEMGRLQRIIKELLKACKNEGNGDDDDTNAVKRGTQLLEIF
SLQILMHSRQRDQKKLREVYERARKITSAVPHPRVVATILECGGKMHMQQ
EREWDQACTAFFQSFKNYDEAGDPERLQV
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mRNA from alignment at E-fasciculatus_F_contig11880:434..3950+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11880.1474.1 ID=mRNA_E-fasciculatus_F_contig11880.1474.1|Name=mRNA_E-fasciculatus_F_contig11880.1474.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3517bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11880:434..3950+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGACAGGTCATGGCGCAGGAGGAGGAGCAGGGGATCTGGGGGTTCAA
GGCGCTGAAGCAGATGATGAAGCTGCTCTTCAAAATGTCGGCATTTCAAG
AGTTCACTGAGTGCTACACGCAGCTGTTGGGTGAGTCCACGAAAAGACCA
CCGCGAATGATTCTTCGCCGACTTACTGACCATGTCTTGAGCGGCGCTAC
TCCGGCGGAGATTGGTTGCCTTCACGTCTACGGCAGATCTACAACAGATC
TACGACAGCTCTACGACATACTTACAACGAGCACACGCTCCACCCCACGA
CCGGCCGACATCTGGTTTCTTGGCGCAATTCTTTGTTTGGACGCTGACCT
GTTTGTCTCACTTGACGCCAACGAAAATCGACGGAAAAATTACCGAAGGG
TATACGAAGGGAGCCGTGACCCAGAACGTGGGGGAGAAGGGCGTCAACAG
CGTCTTGGACTACGTTTCGTCCTCCAACGACTGGAACCTTCTCAAGGGCT
TCTACGAGCAGACGCTGGACACGCTCAGGCGAGTCGGGCTTCATGTTGAC
TTCGTGGTGATCGTGGCATGAATGTTGGGAATCATGGTCATATCCGTCAC
GTTTTTGAACCAATGCGCCTCGCTTGTGTGTTCTTGGCCCGTTCTGATTT
GTCAGCTGTTCTCGCGAGTCTTTTAAAGTCTAGAAACGCCAAGCAATCGC
GAGTGGAACCCAAGCTCTGATGTCTATCCTTCGTGTCGTGGAATCTCGCC
GAACGAGTTCCAGGCTTTGACGCAATGCCTATCCTTTCTATTCTAGTAGA
TACAGAACCTTTTCAGGTACCACCACTAACCTGGGAGTTCAGAACTTCAG
GCTCACATAAATATACGAAAGAACCTGACTGAACTTATGAATAGGTGGTC
AGCTCAGCAGCGTACACAAAGTCATGGTTGGAACGAAGTTTCGGGTGAAA
CAAAGGGTTCTGAAGGGGTGGCCCCAGCTGTTTAGGAGTTTAGGCGAACT
TGTCTTTCTTTTTTCACTACGAATCTGCAATGCGGTTTTGTTGCTGTCGT
CATGGGATAGACCGTTCTTAGCCAGTTCTTTTTTTCTCTTTCTTACTCTC
CGAAGTCCAAAGACGAATATCGGTGGTCACTCGCTACTTAGCAGTGTGCG
TCTGGATTTCAACGGGGCGCACATGTGGAGGAAAGTTAGGAGCCCTTCTT
GTTCACCAGTCCAAGCTTCCGGGTTTTAGCACGTGCTCGTGCCCTCTCTC
CGTTGGTTTGGTTAGATTAAATTCACAGCTGCAATGTGGCAACATATTGT
GCTGGAAGCCTCTGCTGCTATACTACCTTTGTTTTACAACATGCTCTTGA
TCGCATCAGTTTTCATTGGCCACGCATCCATCGCCTTCCTTTTCGTAGGA
ACAAGTTTCACCCTCAAGCGGATAACCCCGCAGGTATTGTCGGTTCCCCA
CCTCTTAACTATTCTCTACTCTAGCCCCTCCGATCGCCTTAATGCTACCG
CCCTCCCTGCCCGCCTCCGCCTCGTCTCTGCGAATGTCTCGCGTGAACCC
AGGGAGCACAAGAACAACAGGCTGTGGTTCAAGTGCAACCTGAAGCTGGG
CCACTTGATGTACGAGGTGGGGGAGATGGGCCGGCTCCAGAGGATAATCA
AGGAGCTACTGAAGTGAGAAAATGGAAGGTAGACGGCGTGTGGGGGAGGG
GAAGGGAGGGGTACGCGTTGTAAAACGAGGCTCGTGTCTTAGACAGGGCA
CCCGGTGTACGGGCCACAACCGGTGTGCGTTGGTCACATCCGCCTGCTCG
ACTCAGCCCACCGCACGGAGCCACTCTCCTTTTTTGACCCGCTTTGACGA
CAAGGAGAGTCTTGAGATTTAGCTCGAGGCTTTTGCCCGCATAATCCTTG
ACGTCCATCGTCATGTGTCTGGAGTCCTGGTTTATCGCGCGATGAGCATG
CAAGGACATATTGTTTGCAGCTCTAGGTCCACGTGTTGTAGTAACTTACA
CGTTCCACTACCACAGGCGCGCACGCTTGCTTTTTTTCTTTCCTTTGTCC
TCGTCATATTTCGTGTTTTCTCTTTTTTGTCTCGTTTGCTGTGGACTGCG
ATCGATGATGCAGGGCTTGCAAGGGTAAGAGTTGTGCTTATCCCCACCAT
CGATACGTTTAGGTTAGTTTTGTGTTCCGTTGGATGATATTTGGCGATGA
TACAGGGCTTGCAAGGGTTAGAGTTGTCCTTATCCTCACCATCAAAACAT
TTTATCGTTGATTTTTGTTTCGTTGGATGGTGATTTGGCGACGACGCAGG
GCTTGCAAGAACGAGGGGAACGGGGACGACGATGACACCAACGCCGTCAA
GCGGGGGACACAGCTGCTCGAGATCTTCTCCTTGCAGATCCTCATGCACT
CCAGACAAAGGGACCAGAAGAAACTGAGGTGAGTTGTCATGAGTATGGCG
CGTGTGTGAGGGGAGGTTAGAGGGGGTGTCGATGTAATGCATTATTCTGG
TGTTCACCTTGCTTTGGTCGTTTGGTCGCTTCAGCAGTTGTACATATTTT
GAGTCGTTTATGCCCTCCATGAACGCCCTTTCCTTGCCCTCCCCACTCCT
GTTCGTGTCCTGGATGTTGGAACACCTCTTACATTTCCCGCGGCAAAAAC
AAATTCGGTCTCCCCCCTGACATCCTTTCTACATGTACGTTATTTGAGCT
GCAAAACAAGTTCATCGAAGGAATCCCTCATGGTGTTGTCGTCGTCATCG
TTGTTAGTGGTGGTGGGGATGCCGTTGTTGTTGTGATTGTTATTGCTCTT
GCCGTCGTAGCAGCTGTGCCATACATTGCTTCTGTATTGCAGTCGTGTCG
AGACGTCTCTATTTTATAGCTGTATGATCGATCGCCTCCGCGTATTTCTC
CTCGGCACGCACACCGTCACCGTCCGTCCCTTTTTGTTTTCTGCCAGGGA
AGTCTACGAGCGAGCGCGAAAGATTACCTCCGCTGTGCCGCATCCCAGAG
TGGTGGCCACCATTCTCGAGTGCGGGGGGAAGATGCACATGCAGGTNNNN
NNNNNNGGGGGGGGGTACGCTGTAACGCGGCGGCTCTCCTGGAGCCGTGT
TGCAGTTTGGGTGGGGAGCTGTGAGAGAGGAGCAACTTGTCGGTTCAAGC
CGCGATAATGGGAGTTTTTTTATGCTAGAACGGCGAGAAACACAGCAGTT
TTTTTGCGAAACAACGACAAAGTACCGTAGGTTGCATAGGATACCACACC
CCCTGGGTCGATTTTGAAGGCTCGGTTACTCCTCGACGAGGAGGACGCCG
AAAGCAAAAGTGATACGTTTGTCGGGTGGCTCTCGACGAGACGGTTCTAA
CGCGCCATTGTCGGCACCGTCGTTGTTTTTCCTCATATCGTTTACCCTAT
CGGCCGCCTTGGCAATGTTTCCGAGAGCAGGAGAGGGAGTGGGACCAAGC
CTGCACGGCGTTTTTCCAGAGCTTCAAGAACTACGACGAGGCAGGCGACC
CCGAGCGGTTGCAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11880:434..3950+

>mRNA_E-fasciculatus_F_contig11880.1474.1 ID=mRNA_E-fasciculatus_F_contig11880.1474.1|Name=mRNA_E-fasciculatus_F_contig11880.1474.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11880:434..3950+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGACAGGTCATGGCGCAGGAGGAGGAGCAGGGGATCTGGGGGTTCAA
GGCGCTGAAGCAGATGATGAAGCTGCTCTTCAAAATGTCGGCATTTCAAG
AGTTCACTGAGTGCTACACGCAGCTGTTGGATGGGACAGGTCATGGCGCA
GGAGGAGGAGCAGGGGATCTGGGGGTTCAAGGCGCTGAAGCAGATGATGA
AGCTGCTCTTCAAAATGTCGGCATTTCAAGAGTTCACTGAGTGCTACACG
CAGCTGTTGGGGTATACGAAGGGAGCCGTGACCCAGAACGTGGGGGAGAA
GGGCGTCAACAGCGTCTTGGACTACGTTTCGTCCTCCAACGACTGGAACC
TTCTCAAGGGCTTCTACGAGCAGACGCTGGACACGCTCAGGCGAGGTATA
CGAAGGGAGCCGTGACCCAGAACGTGGGGGAGAAGGGCGTCAACAGCGTC
TTGGACTACGTTTCGTCCTCCAACGACTGGAACCTTCTCAAGGGCTTCTA
CGAGCAGACGCTGGACACGCTCAGGCGACACAAGAACAACAGGCTGTGGT
TCAAGTGCAACCTGAAGCTGGGCCACTTGATGTACGAGGTGGGGGAGATG
GGCCGGCTCCAGAGGATAATCAAGGAGCTACTGAACACAAGAACAACAGG
CTGTGGTTCAAGTGCAACCTGAAGCTGGGCCACTTGATGTACGAGGTGGG
GGAGATGGGCCGGCTCCAGAGGATAATCAAGGAGCTACTGAAGGCTTGCA
AGAACGAGGGGAACGGGGACGACGATGACACCAACGCCGTCAAGCGGGGG
ACACAGCTGCTCGAGATCTTCTCCTTGCAGATCCTCATGCACTCCAGACA
AAGGGACCAGAAGAAACTGAGGGCTTGCAAGAACGAGGGGAACGGGGACG
ACGATGACACCAACGCCGTCAAGCGGGGGACACAGCTGCTCGAGATCTTC
TCCTTGCAGATCCTCATGCACTCCAGACAAAGGGACCAGAAGAAACTGAG
GGAAGTCTACGAGCGAGCGCGAAAGATTACCTCCGCTGTGCCGCATCCCA
GAGTGGTGGCCACCATTCTCGAGTGCGGGGGGAAGATGCACATGCAGGGA
AGTCTACGAGCGAGCGCGAAAGATTACCTCCGCTGTGCCGCATCCCAGAG
TGGTGGCCACCATTCTCGAGTGCGGGGGGAAGATGCACATGCAGCAGGAG
AGGGAGTGGGACCAAGCCTGCACGGCGTTTTTCCAGAGCTTCAAGAACTA
CGACGAGGCAGGCGACCCCGAGCGGTTGCAGGTACAGGAGAGGGAGTGGG
ACCAAGCCTGCACGGCGTTTTTCCAGAGCTTCAAGAACTACGACGAGGCA
GGCGACCCCGAGCGGTTGCAGGTA
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