mRNA_E-fasciculatus_F_contig1188.1473.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1188.1473.1 vs. uniprot
Match: A0A6H5KJR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR5_9PHAE) HSP 1 Score: 1172 bits (3033), Expect = 0.000e+0 Identity = 734/933 (78.67%), Postives = 755/933 (80.92%), Query Frame = 3
Query: 297 SKRGVDTAHLITLSPNDLFCALSVDSFPLAVSTAAAQXXXXXXXXXXS-RRAHKQASVAVACALPRAFEVVDGPVVIHRPAARHGEPWRGLEVFRPGGAVGSWRGHRVPLPALCRGGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRLDLAAANAAAAHDGADFVEATPTPLSGESAA-AAARGRKRAAGTGGNALLVCPPGAPCPAATPDASLSSSGGGDESVPGASLLEGNGVGAAVVALPXXXXXXXXXXXEAEDSARPPHLPPQWASLFVDREGAASLSPWRGLASESRYHSPTCLSRAPDIDSGVVGLATGALPEGTAAAGDGGLILKSLPPTVYAGVALDGGWGGAEATXXXXXXXXXXXXLELQGGALSCARLLPAPPSSVMAAAVDDAQGVLVVLLADQAGTALLLARDGCDLPVVEEHRGIAAAFKGDFLGNGREQVALLSATSTGGXXXXXXXXXGKPGKRGVAASKTGGGGWEQLPLKSLVKRALVTDCSCVWGNERREDLPATPSSGGVNGESGASGSSRAAALTGGVEVPRGAAKGKKRQRSSGLGDEAGVAASSGANGSPVALAKPSKGGGADGXXXXXXXXXXXV-GVLRRRVQAEEARLLQLRQARRGKAAALEAAKLALTANVESGSACGGGCDVSADGGDHGEDAGSPRAPSNARLFLDGLVTPAFGGGG----VSTLPSGHQVGERVAEEPPPAAPLQCAIARVRFHPPSRVLCLDAHVRNPSPPKADNAAEATPAXXXXXXXXXXXXXPPVTVVNVCLTVASASGHLATRSAVCPRLRPGESATVRACVEVPFGLLAGXXXXXXX-VVPGRVASLYASCSWSLGGASXXXXXXXXXXXXXXANSTAGARESDTLDRPSRSFMFARVLVSPKDMLGLGGGVASLAQASEDKQVGQDFFGHHRSAKAAA 3071
SKRGVDTAHLITLSPNDLFCALSVDSFPLAVST A Q XXXXXX RRA + SV ACALPRAFEVVDGPVVIHRPAARHGEPWRGLE+FRPGG VGSWRGHRVPLPA+ RGGEEG XXXXXXXX FRLDLAAANAAAA DG D VEATP+PLSGESAA AAARGRKRA GTG + LLVCPPGAP PAAT DAS S SG GDES+PG SL + NGV AAVVALP XXXXXXXXXX QW SLF+DREG ASL+PW GLASESRYHSPTCLSRAPD+DSGVVGLA+GALPEGTAA GDGGLILKSLPPT YAGVAL+ G GGAEAT LELQ GALSCARLLPAPPSSVMAAAVDDA GVL VLLADQAGTALLLARDGCD PVVEEHRGI+AAFKGDFLGNGREQVA LSA STG XXXXXXXX G AASKTGG GWEQLPLKSLVKRALVTDCSCVWGNERREDLP TP GGVNGE GA S A ALTGG EVP+GA KGKKRQRS+GLGDEAGVAASSGA+GS VALAKPS GGADG V GVLRRRVQAEEARLL LRQARRGKAAALEAAKLALTA+VESG A GGGC++ ADGG+HGEDAGSPRA SNA LFLDGLV PAFGG VSTLPSGH V ERVAEEPPPA PLQCAIARVRFHPPSRVLCLDAHVRNPSPPKA NAAEATPAXXXXXXXX P VTVVNVCLTVASASGHLATRSAVCPRLRPGESATVRACVEVPFGLLAGXXXXXXX VVPG+ ASLYASCSWSLGG S S AGARE DTLDRPSRS MFARVLVSPKDMLGLGGG ASLAQA EDKQ GQD FGHHRSAKAAA
Sbjct: 220 SKRGVDTAHLITLSPNDLFCALSVDSFPLAVSTEAVQDTSGXXXXXXXXRRAQNKISVVAACALPRAFEVVDGPVVIHRPAARHGEPWRGLEIFRPGGPVGSWRGHRVPLPAVSRGGEEGEDHDDGTRLGGMLVGGDGXXXXXXXXPP---FRLDLAAANAAAARDGEDLVEATPSPLSGESAATAAARGRKRAVGTGSSTLLVCPPGAPFPAATRDASFSYSGCGDESMPGESLRQCNGVRAAVVALPAXXXXXXXXXXXXXXXXXXXXXXXQWTSLFIDREGGASLAPWCGLASESRYHSPTCLSRAPDMDSGVVGLASGALPEGTAA-GDGGLILKSLPPTFYAGVALNSGRGGAEATTAAEGNGGAL--LELQRGALSCARLLPAPPSSVMAAAVDDALGVLAVLLADQAGTALLLARDGCDFPVVEEHRGISAAFKGDFLGNGREQVAFLSAASTGAGXXXXXXXX--XXXXGAAASKTGGAGWEQLPLKSLVKRALVTDCSCVWGNERREDLPTTPP-GGVNGEGGAXXSRGAVALTGGAEVPKGATKGKKRQRSNGLGDEAGVAASSGASGSSVALAKPSNSGGADGNEDGRLSRLSSVVGVLRRRVQAEEARLLHLRQARRGKAAALEAAKLALTASVESGGAWGGGCELRADGGNHGEDAGSPRASSNAWLFLDGLVAPAFGGXXXXXXVSTLPSGHHVHERVAEEPPPA-PLQCAIARVRFHPPSRVLCLDAHVRNPSPPKAGNAAEATPAXXXXXXXXG----PTVTVVNVCLTVASASGHLATRSAVCPRLRPGESATVRACVEVPFGLLAGXXXXXXXXVVPGKAASLYASCSWSLGGGSSPTAPGGGTRTPS-VRSEAGAREGDTLDRPSRSLMFARVLVSPKDMLGLGGGGASLAQAPEDKQAGQDLFGHHRSAKAAA 1137
BLAST of mRNA_E-fasciculatus_F_contig1188.1473.1 vs. uniprot
Match: D7FGV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV2_ECTSI) HSP 1 Score: 895 bits (2314), Expect = 1.610e-312 Identity = 552/701 (78.74%), Postives = 567/701 (80.88%), Query Frame = 3
Query: 978 VPGASLLEGNGVGAAVVALPXXXXXXXXXXXEAEDSARPPHLPPQWASLFVDREGAASLSPWRGLASESRYHSPTCLSRAPDIDSGVVGLATGALPEGTAAAGDGGLILKSLPPTVYAGVALDGGWGGAEATXXXXXXXXXXXXLELQGGALSCARLLPAPPSSVMAAAVDDAQGVLVVLLADQAGTALLLARDGCDLPVVEEHRGIAAAFKGDFLGNGREQVALLSATSTGGXXXXXXXXXGKPGKRGVAASKTGGGGWEQLPLKSLVKRALVTDCSCVWGNERREDLPATPSSGGVNGESGASGSSRAAALTGGVEVPRGAAKGKKRQRSSGLGDEAGVAASSGANGSPVALAKPSKGGGAD-GXXXXXXXXXXXVGVLRRRVQAEEARLLQLRQARRGKAAALEAAKLALTANVESGSACGGGCDVSADGGDHGEDAGSPRAPSNARLFLDGLVTPAFGGGGV-STLPSGHQVGERVAEEPPPAAPLQCAIARVRFHPPSRVLCLDAHVRNPSPPKADNAAEATPAXXXXXXXXXXXXX---PPVTVVNVCLTVASASGHLATRSAVCPRLRPGESATVRACVEVPFGLLAGXXXXXXX--VVPGRVASLYASCSWSLGGASXXXXXXXXXXXXXXANSTAGARESDTLDRPSRSFMFARVLVSPKDMLGLGGGVASLAQASEDKQVGQDFFGHHRSA 3059
+PG SL E NGVGAAVVALP EAED ARP HLPPQW SLFVDREG ASL+PW GLAS SR+HSPTCLSR PDIDSGVVGLA+GALPEGTAAAGDGGLILKSLPPTVYAGVALD G GGAEAT LELQ GALSCARLLPAPPSSVMAAAVDDAQGVL VLLADQAGTALLLARDGC+ PVVEEHRGIAAAFKGDFLGNGREQVALLSA STG XXXXXXXX RG AASKTGG WEQLPLKSLVKRALVTD SCVWGNERREDLP PS GGVNGE GA GS A ALTG VEVP+GA KGKKRQRS+GLGDEAGVAASSGANGS VALAKPSK GGAD VGVLRRRVQAEEARLLQLRQARRGKAAA+EAAKLALTA+ E SACGGGC+VSADGGDHGEDAG PRA SNARLFL+GLVTPAFGGGG STLPSGHQV ERVAEEPPPA PLQCAI RVRFHPPSRVLCLDAHVRNPSPPKA NAAE TPAXXXXXXXXXXXXX PPVTVVNVCLTVASASGHLATRSAVCPRLRPGESATVRACVEVPFGLLAGXXXXXXX +VPGR ASLYASCSW LGG NS+ A T P V+ +DMLGLGGGVASLAQA EDKQ GQDFF HHRSA
Sbjct: 1 MPGESLRECNGVGAAVVALPAVVPAASSSAAEAEDPARPQHLPPQWTSLFVDREGGASLAPWCGLASASRHHSPTCLSRTPDIDSGVVGLASGALPEGTAAAGDGGLILKSLPPTVYAGVALDSGRGGAEATTAAEGNGGAL--LELQRGALSCARLLPAPPSSVMAAAVDDAQGVLAVLLADQAGTALLLARDGCEFPVVEEHRGIAAAFKGDFLGNGREQVALLSAASTGAGXXXXXXXX--XXXRGAAASKTGGARWEQLPLKSLVKRALVTDSSCVWGNERREDLPTAPS-GGVNGEGGAGGSRGAVALTGSVEVPKGATKGKKRQRSNGLGDEAGVAASSGANGSSVALAKPSKTGGADVNKDSRLSRLSSVVGVLRRRVQAEEARLLQLRQARRGKAAAVEAAKLALTASAEGISACGGGCEVSADGGDHGEDAGPPRASSNARLFLNGLVTPAFGGGGGGSTLPSGHQVHERVAEEPPPA-PLQCAITRVRFHPPSRVLCLDAHVRNPSPPKASNAAEITPAXXXXXXXXXXXXXXXXPPVTVVNVCLTVASASGHLATRSAVCPRLRPGESATVRACVEVPFGLLAGXXXXXXXXXLVPGRAASLYASCSWRLGG-----------------NSSPAALGGGTRTPP----------VNSEDMLGLGGGVASLAQAPEDKQAGQDFFDHHRSA 668 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1188.1473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1188.1473.1 >prot_E-fasciculatus_F_contig1188.1473.1 ID=prot_E-fasciculatus_F_contig1188.1473.1|Name=mRNA_E-fasciculatus_F_contig1188.1473.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=546bp MAAAVDDAQGVLVVLLADQAGTALLLARDGCDLPVVEEHRGIAAAFKGDFback to top mRNA from alignment at E-fasciculatus_F_contig1188:16389..19498+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1188.1473.1 ID=mRNA_E-fasciculatus_F_contig1188.1473.1|Name=mRNA_E-fasciculatus_F_contig1188.1473.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3110bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1188:16389..19498+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1188:16389..19498+ >mRNA_E-fasciculatus_F_contig1188.1473.1 ID=mRNA_E-fasciculatus_F_contig1188.1473.1|Name=mRNA_E-fasciculatus_F_contig1188.1473.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1188:16389..19498+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |