mRNA_E-fasciculatus_F_contig1188.1472.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1188.1472.1
Unique NamemRNA_E-fasciculatus_F_contig1188.1472.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1188.1472.1 vs. uniprot
Match: A0A6H5KJR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR5_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.450e-34
Identity = 92/106 (86.79%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:   49 MTPTATGHEVGPSKKKARRSSRHGEAPPSSHYGPVASTSAVGSALVQANLTVDTTXXXXXXXXXXXXXXXXXXXNANGKSGPRGGNDNGYALYMSESKFDPVRRRF 366
            MTPTATG+E  PSKKK RRSSRHGEAPPSSHYGPVASTSA GSALVQANLTVDT XXXXXXXXXXXXXXXX   NAN +SGPRGGNDN Y LYMSESKFD VRRRF
Sbjct:    1 MTPTATGNEADPSKKKGRRSSRHGEAPPSSHYGPVASTSAAGSALVQANLTVDTXXXXXXXXXXXXXXXXX---NANDRSGPRGGNDNSYVLYMSESKFDSVRRRF 103
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1188.1472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJR5_9PHAE3.450e-3486.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1188contigE-fasciculatus_F_contig1188:15993..16358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size368
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927698.5424747-CDS-E-fasciculatus_F_contig1188:15992..163581622927698.5424747-CDS-E-fasciculatus_F_contig1188:15992..16358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1188 15993..16358 +
1695995654.708769-CDS-E-fasciculatus_F_contig1188:15992..163581695995654.708769-CDS-E-fasciculatus_F_contig1188:15992..16358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1188 15993..16358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1188.1472.1prot_E-fasciculatus_F_contig1188.1472.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1188 15993..16358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1188.1472.1

>prot_E-fasciculatus_F_contig1188.1472.1 ID=prot_E-fasciculatus_F_contig1188.1472.1|Name=mRNA_E-fasciculatus_F_contig1188.1472.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=122bp
MLAQHDKDSSSSSRHSMTPTATGHEVGPSKKKARRSSRHGEAPPSSHYGP
VASTSAVGSALVQANLTVDTTAAAAAAAAQQQQQQSSGGGNANGKSGPRG
GNDNGYALYMSESKFDPVRRRF
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mRNA from alignment at E-fasciculatus_F_contig1188:15993..16358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1188.1472.1 ID=mRNA_E-fasciculatus_F_contig1188.1472.1|Name=mRNA_E-fasciculatus_F_contig1188.1472.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1188:15993..16358+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGGCACAGCATGACAAGGACAGCAGCAGCAGCAGCAGACACAGCAT
GACGCCGACCGCAACAGGGCACGAGGTGGGGCCCTCTAAGAAGAAGGCGC
GCCGTAGCTCCCGCCATGGCGAAGCACCGCCCTCCTCTCACTACGGCCCA
GTCGCTTCCACCTCGGCGGTAGGCTCAGCACTGGTCCAGGCCAACCTCAC
GGTCGACACAACAGCGGCGGCGGCGGCGGCGGCGGCACAACAGCAGCAGC
AGCAGTCAAGCGGTGGCGGCAATGCCAACGGCAAGAGTGGGCCGCGGGGT
GGGAACGACAACGGCTACGCCCTGTACATGTCGGAATCGAAATTCGATCC
CGTTAGGCGGCGCTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1188:15993..16358+

>mRNA_E-fasciculatus_F_contig1188.1472.1 ID=mRNA_E-fasciculatus_F_contig1188.1472.1|Name=mRNA_E-fasciculatus_F_contig1188.1472.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1188:15993..16358+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGGCACAGCATGACAAGGACAGCAGCAGCAGCAGCAGACACAGCAT
GACGCCGACCGCAACAGGGCACGAGGTGGGGCCCTCTAAGAAGAAGGCGC
GCCGTAGCTCCCGCCATGGCGAAGCACCGCCCTCCTCTCACTACGGCCCA
GTCGCTTCCACCTCGGCGGTAGGCTCAGCACTGGTCCAGGCCAACCTCAC
GGTCGACACAACAGCGGCGGCGGCGGCGGCGGCGGCACAACAGCAGCAGC
AGCAGTCAAGCGGTGGCGGCAATGCCAACGGCAAGAGTGGGCCGCGGGGT
GGGAACGACAACGGCTACGCCCTGTACATGTCGGAATCGAAATTCGATCC
CGTTAGGCGGCGCTTCATGTTGGCACAGCATGACAAGGACAGCAGCAGCA
GCAGCAGACACAGCATGACGCCGACCGCAACAGGGCACGAGGTGGGGCCC
TCTAAGAAGAAGGCGCGCCGTAGCTCCCGCCATGGCGAAGCACCGCCCTC
CTCTCACTACGGCCCAGTCGCTTCCACCTCGGCGGTAGGCTCAGCACTGG
TCCAGGCCAACCTCACGGTCGACACAACAGCGGCGGCGGCGGCGGCGGCG
GCACAACAGCAGCAGCAGCAGTCAAGCGGTGGCGGCAATGCCAACGGCAA
GAGTGGGCCGCGGGGTGGGAACGACAACGGCTACGCCCTGTACATGTCGG
AATCGAAATTCGATCCCGTTAGGCGGCGCTTC
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