mRNA_E-fasciculatus_F_contig11877.1468.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: A0A6H5L6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M3_9PHAE) HSP 1 Score: 314 bits (804), Expect = 3.700e-101 Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 1
Query: 1 MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNE LPDDIRCFSVSKVPKSFRGREECTLR
Sbjct: 80 MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNENLPDDIRCFSVSKVPKSFRGREECTLR 233
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: D8LDS4_ECTSI (Pseudouridylate synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS4_ECTSI) HSP 1 Score: 314 bits (805), Expect = 5.630e-101 Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 1
Query: 1 MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTA GMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR
Sbjct: 1 MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 154
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: A0A835YLA7_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA7_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.390e-38 Identity = 82/149 (55.03%), Postives = 97/149 (65.10%), Query Frame = 1
Query: 58 GNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSR--------------TDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
G E KRKVA+V+GYVGT F G Q ++ VRTVE E+ETAL+ AG I +SNYGDL+KIGW RTSR TDKGVHA+KTV AKLL+ Q F AAG++ K +N LP D+R FSV KVPK FRGR EC+ R
Sbjct: 7 GEEKGGVAKRKVALVLGYVGTDFSGLQIDRNS-GVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWR 154
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: A0A6A5AFW9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AFW9_9STRA) HSP 1 Score: 131 bits (330), Expect = 4.270e-36 Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = 1
Query: 61 NELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTA-AGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
+E K K KVA+V GY GT +HG Q +A +V T+E E+ AL+KAG I +SNYGD++KIGW R+SRTDKGVHAS V + KLL+ + +G + ++N LP DIR F+ +KV +SFR RE+C LR
Sbjct: 31 DEPGKKRKVKVALVTGYTGTGYHGVQIQENAVDVPTIEHEVRAALFKAGCILESNYGDMSKIGWSRSSRTDKGVHASSIVLSGKLLVQDDRIDPRSGRIAHLPAEINAHLPADIRVFTATKVHQSFRAREDCILR 165
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: A0A6I9R7P1_ELAGV (putative tRNA pseudouridine synthase n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R7P1_ELAGV) HSP 1 Score: 131 bits (330), Expect = 4.060e-33 Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 1
Query: 22 PAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
P PPP T D G K+KV + VGYVGT + G Q D+ ++ T+E ELE+A++KAG I DSNYGDL+KIGW R+SRTDKGVH+ T+ + K+ +P+ + + +N LP+++R FSV KSF R ECT+R
Sbjct: 49 PTPPPAT--DHGGRRWESFRKKKVVMRVGYVGTDYRGLQMQRDSHSLSTIEAELESAIFKAGGIRDSNYGDLHKIGWARSSRTDKGVHSLATMISLKMEIPEHAWREDPSGMLLANCVNSNLPNNVRVFSVLPSQKSFDARRECTVR 193
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: A0A2P4XCG6_9STRA (tRNA pseudouridine(38-40) synthase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XCG6_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.980e-32 Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = 1
Query: 61 NELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT--AAGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
N +K KRKVAIV GY+GT +HG Q + NV T+E E+ A++KAGA+ +SN+ DL KI W R+SRTDKGVHA V + KLL+ +E+ +G Q + LN LPD+IR FS ++V K F R+ C LR
Sbjct: 41 NATAKLVKRKVAIVSGYMGTGYHGLQLN---DNVETIEDEIRRAIFKAGAMRESNFEDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEESKVDPVSGRVQGLTEALNASLPDNIRVFSCTRVNKRFSARKNCVLR 173
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: A0A024U417_9STRA (tRNA pseudouridine(38-40) synthase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U417_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.310e-31 Identity = 68/134 (50.75%), Postives = 87/134 (64.93%), Query Frame = 1
Query: 64 ELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT-AAGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
E K K KVA+V GY GT +HG Q + NV TVE + AL+KAG I +SNYGD++KIGW R+SRTDKGVHAS V + KLL+ +G + D++N LP DIR F+ +KV +SFR RE+C LR
Sbjct: 31 ESGKKRKVKVALVTGYTGTGYHGVQIQENV-NVPTVEHAVREALFKAGCILESNYGDMSKIGWSRSSRTDKGVHASSIVLSGKLLVHGNRIDPVSGRIAHLPDQINAYLPQDIRVFTATKVHQSFRAREDCILR 163
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: A0A6G0WDH2_9STRA (PseudoU_synth_1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDH2_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.380e-31 Identity = 67/138 (48.55%), Postives = 95/138 (68.84%), Query Frame = 1
Query: 61 NELSKPTKRKVAI--VVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT--AAGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
NE + KRKV + V+GY GT +HG Q + +V T+E E+ +AL+KAG I +SNYGD++KIGW R+SRTDKGVHA+ V +AKLL+ +E ++Q +D +N LP++IR F+ +KV +SFR REEC +R
Sbjct: 27 NEFKEDKKRKVKVGLVMGYTGTGYHG-VQIQEKNDVPTIEHEVRSALFKAGCILESNYGDMSKIGWSRSSRTDKGVHATSIVVSAKLLVHEERIDKKTGRIAQLVED-INVHLPENIRVFTATKVHQSFRAREECIMR 162
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: A0A1V9Y8S5_9STRA (Ubiquitin fusion degradation protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8S5_9STRA) HSP 1 Score: 126 bits (316), Expect = 3.900e-31 Identity = 67/132 (50.76%), Postives = 89/132 (67.42%), Query Frame = 1
Query: 70 SKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYG-KDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
+K K K A+V GY+GT FHG Q + NV T+E EL AL+ AG I++SNY D+ KIGW R+SRTDKGVHAS V +AKLL+ +++ + G + LN+ LPD IR F+ +KV +SFR RE+C LR
Sbjct: 18 AKKRKVKAALVSGYLGTGFHGVQLQ-EHNNVPTIEQELRNALFAAGCISESNYADMAKIGWSRSSRTDKGVHASCIVFSAKLLVDEDSIDESTGRLIGLPEALNKHLPDTIRMFTATKVHRSFRAREDCLLR 148
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Match: A0A6A3ZI15_9STRA (PseudoU_synth_1 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZI15_9STRA) HSP 1 Score: 126 bits (316), Expect = 5.490e-31 Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 1
Query: 70 SKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT--AAGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 462
+K KRKVAIV GY+GT +HG Q + NV T+E E+ A++KAGA+ +SN+ DL KI W R+SRTDKGVHAS V + KLL+ +E A+G + K+ LN LPD+IR FS ++V K F R+ C LR
Sbjct: 37 AKLVKRKVAIVSGYMGTGYHGLQMN---DNVETIEDEIRRAIFKAGAMRESNFEDLGKIDWARSSRTDKGVHASCIVFSGKLLIDEENKVDPASGRVKGLKEALNASLPDNIRVFSCTRVNKRFSARKNCVLR 166 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11877.1468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11877.1468.1 >prot_E-fasciculatus_F_contig11877.1468.1 ID=prot_E-fasciculatus_F_contig11877.1468.1|Name=mRNA_E-fasciculatus_F_contig11877.1468.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=154bp MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDback to top mRNA from alignment at E-fasciculatus_F_contig11877:442..1599- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11877.1468.1 ID=mRNA_E-fasciculatus_F_contig11877.1468.1|Name=mRNA_E-fasciculatus_F_contig11877.1468.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1158bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11877:442..1599- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11877:442..1599- >mRNA_E-fasciculatus_F_contig11877.1468.1 ID=mRNA_E-fasciculatus_F_contig11877.1468.1|Name=mRNA_E-fasciculatus_F_contig11877.1468.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11877:442..1599- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |