mRNA_E-fasciculatus_F_contig11875.1466.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11875.1466.1
Unique NamemRNA_E-fasciculatus_F_contig11875.1466.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11875.1466.1 vs. uniprot
Match: A0A6H5KXZ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXZ9_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.000e-48
Identity = 153/194 (78.87%), Postives = 159/194 (81.96%), Query Frame = 1 
Query:    1 QATVEKQSQVLDAAGGEKGILSLREAASSAGDATDLLHQAQAEAAAAREXXXXXXXXXXXXXXXXXXXXXSGANAGXXXXXXXXXXXXXXXXKDALQGKLDAADKELETLRNNLTRSEANESKAREEHDRHAQEMRGKLERTASELELARKPRVVSMTAICADVKELGNSLVEQSKDARDDIVKRASEKVEMVR 582
            +ATVEKQSQVLDAAGGEKGI  LREAAS+AGDAT LL QA+AEAAAA  XXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXX                     LTR+EA ESKAREEHDRHAQEMRGKLERTASELELARKPRVVSMTAICADVKELGN+LVEQSKDARDDIVKRASEK+EM R
Sbjct:   98 EATVEKQSQVLDAAGGEKGIRELREAASAAGDATTLLQQARAEAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTRAEAKESKAREEHDRHAQEMRGKLERTASELELARKPRVVSMTAICADVKELGNNLVEQSKDARDDIVKRASEKLEMAR 291
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11875.1466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXZ9_9PHAE1.000e-4878.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11875contigE-fasciculatus_F_contig11875:86..3392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002520.1
Exons3
Model size594
Cds size594
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11875.1466.1prot_E-fasciculatus_F_contig11875.1466.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11875 86..3392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927698.2667787-CDS-E-fasciculatus_F_contig11875:85..3641622927698.2667787-CDS-E-fasciculatus_F_contig11875:85..364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11875 86..364 +
1695995654.6064537-CDS-E-fasciculatus_F_contig11875:85..3641695995654.6064537-CDS-E-fasciculatus_F_contig11875:85..364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11875 86..364 +
1622927698.2819884-CDS-E-fasciculatus_F_contig11875:2108..22641622927698.2819884-CDS-E-fasciculatus_F_contig11875:2108..2264Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11875 2109..2264 +
1695995654.614327-CDS-E-fasciculatus_F_contig11875:2108..22641695995654.614327-CDS-E-fasciculatus_F_contig11875:2108..2264Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11875 2109..2264 +
1622927698.294098-CDS-E-fasciculatus_F_contig11875:3233..33921622927698.294098-CDS-E-fasciculatus_F_contig11875:3233..3392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11875 3234..3392 +
1695995654.6229243-CDS-E-fasciculatus_F_contig11875:3233..33921695995654.6229243-CDS-E-fasciculatus_F_contig11875:3233..3392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11875 3234..3392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11875.1466.1

>prot_E-fasciculatus_F_contig11875.1466.1 ID=prot_E-fasciculatus_F_contig11875.1466.1|Name=mRNA_E-fasciculatus_F_contig11875.1466.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=198bp
QATVEKQSQVLDAAGGEKGILSLREAASSAGDATDLLHQAQAEAAAARED
AAAARGEVEVAKQEAEAAKESGANAGSEAAAARETAAQIAAEKDALQGKL
DAADKELETLRNNLTRSEANESKAREEHDRHAQEMRGKLERTASELELAR
KPRVVSMTAICADVKELGNSLVEQSKDARDDIVKRASEKVEMVREED*
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mRNA from alignment at E-fasciculatus_F_contig11875:86..3392+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11875.1466.1 ID=mRNA_E-fasciculatus_F_contig11875.1466.1|Name=mRNA_E-fasciculatus_F_contig11875.1466.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3307bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11875:86..3392+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCCACGGTCGAGAAGCAGTCCCAGGTGCTAGACGCTGCCGGTGGAGA
GAAGGGCATCCTTTCGCTAAGGGAGGCGGCCTCCTCGGCGGGAGATGCGA
CGGACCTTCTGCACCAGGCACAGGCGGAGGCGGCAGCCGCTAGGGAGGAT
GCGGCTGCCGCGAGGGGGGAGGTCGAGGTTGCGAAGCAGGAGGCCGAGGC
GGCGAAGGAGAGCGGGGCGAACGCGGGCAGCGAGGCGGCCGCCGCTCGGG
AAACGGCGGCGCAAATCGCGGCGGAGAAGGTATATATGCGTTATATTTGG
TTGTTGTTGGTATCGTCGTAGTCTGTTCTCTGCCTTGCACAGACACAGCA
GTAGGTTCTGGTCTCTGCCTTGCACACACATAGCAGTAGGTTCTGGTCTC
TGCCTTGCACAGACACAGCAGTAGGTTCTGGTCTCTGCCTTGCACAGACA
CGCGTTTGTGTCGTGGGTGTTGTTCTCCCCTGCACACACAAGCACACCCG
TGGGAGTGGCTGAAGCCTGGGAGCGTTCCCCTCATGTTGGTTGAAGGACG
TCATGGGTGTGACGAGAGAGAGACAGAGAAACTGGAGTGTAATCCTCCAT
GTGAAACATTTGTGTTTGCGTTTTTTGCTTTCCTGTGAGGTAGTGTTTTT
TTCTTCTTCTTTTTTTCGTTCTCGATGGTTTCCTGCTAAGTGTTTTTTTC
TTCGGCTCTGGTCACCACGAGCGTGAAATTGTTTGCCATATACAGTAGTG
GGGGTACAGCCCCCGAATAAGCGGTGGTGGGGCAGCTGGTATTGACCGCC
TTATTGAGGTGGCCGCATTTTTCTTTTATGTAGGACAAGGACAACTTGAT
TATTCCGTCCATACCAGCCAATTGCACCCACCGTATATGGGGCGACCACC
TTATTCAGGAAACCTTACTGTACTTGGAAATGTTCAAGGAGGCACCTGTG
CCGTGCCGTGGTTGTGCCCCAATGCCGCTAGGTGGCAGGACCTCAAGTGT
ATTGGCGTGGTTCAAACTACACCCCCCCCCCCCGTGGGGGCTGAGTCTTG
TTTGGGGACAACAACATGATGCCCCCGCGCGCTTTACCCGCTTTTGCAAC
CACCCTTTGAGAAATTTCTTCAGAGTAGCAAGACGGGTGTGTCAAAAGTT
GTAGGGCTTTCAGAATAGGTCCGCCTTGCTTTGTTCGGTAACGCGGGGAT
TCTGTGATCACCATCCGATAACAGCTCTACGTAGTGGATGGTGATGGTGT
CCTTCGTGCGTTCTCTCAAGAGCGTAAAAAGCTGCCGTGCTGCAAGCGCT
TTCGCCGGTACTTGCACCGTGCGTCGGCGTTATTCCATGGGGCGAGTACA
CGGGCCGCTTTTTTTATTCCTGCGTACGATTTGCATCGCGAAGCCGAGTC
CGGTGGAGAGCACTAGCACTTGACGTTTTCCGCCGCTGAGCGCTAAGAGT
AGAATAAGCCGCTGCTGCCGCCTGTGGGTGAAGGTGGCTGGCAGCTTAGC
AGAACCGAAATGGGGGAAAGAGAGGGGGTGCTCTTTTTGTTGGCAACGGA
AGGTAGACACTGCTAAAGGCACGGGTCCGGAGACGGTGGGATGGGGGCAG
TCACTTCTTGGCTAAGGGGAGCAAGCGGGAAGGGGTGCAGTTTTCAGGGT
GACTTTTTTCATGTCTTATGTCTGATGTCTTCAGTCGCTTCACACACACA
CACAGCTTAAATTTTGAAAACTGAAAATATGCATTCAGTCCCTGAGAAGA
CCGCCCGTTCGACATGATGTGGTGCCCCAGTTGTTCTCTCTCTCAGCCGG
CGTGACCCTTCCTTTCTCGCCTTGGCTATCCAGTGGTCTCCCTTTCTGCC
GTGCTGACGCGATCTCTCTCTATCTCTCTCTCTCTTGCTCTCTCTCTCTC
TTGCTCTCTCTCCCTCTCCCCCTCTCTCCCTCTCTCTCTGCGCTGTGTCC
CCCTCTCTCCCTCTCTCTCTGCGCTCTGTCCGCCATGAAACCGACGACAC
ACGTCAAATCCGACAAATTCCAGGACGCTTTGCAGGGCAAGCTCGACGCA
GCGGACAAGGAACTGGAGACCCTAAGGAACAACCTTACCAGGTCTGAAGC
GAACGAGTCCAAGGCGAGAGAGGAGCACGACAGACACGCGCAGGAGATGC
GGGGCAAGCTTGAGAGGACGGCCTCGGAGGTGCGGCGTGACTGCCGTTGG
TGTGATTTGGGCGGCTGTCGTTTTTTTTTTTTTTNNNNNNNNNNTTCAGA
GAACATCGGCATCACTGGTATATGTCAGTGTCGTTGTTGTTGATATTCTT
GTCCCCACATCGAGGCCCGTTCCGATCTCTCTATCCAGCGTATAGGTGAA
GAACAGGCTCAGAATAGGTCTAGTGTCCAGCAGCTTTTCTCCCCATCACT
GTAAAGTCTCCATCACATCCAGTTGTATCTGAAAAGATGCGTAAACACCC
TAAAGTAAGACTATCCGTTCGAGGTATATAGCTACAGCTACAACAGAGTC
GAAGGGAATGTGTTGAAGTCTTTCCGTCAGTGAGTGTTGTCGTCGTGGGG
AAGTATGTTTGCGTTGTGACTGTTCGTTGGCCGAACATGTATGTCTTTAT
TATTAGCATTGGCCACGCGAACCGGCTGACGAGTGCAATGACGTCAGTCT
CAGTGCGGTTGAAAACAGGAAAAAAAAAAAAAAACAGAGCACAAAGTGCT
TCCAAGTGCCATGCCATGATCTGGGAGGTGCCGTGGGGGAGACTTGAGCT
GTTGTCCGTGTGTGTTATGGGGGGGATCGGTCTCGAAACGAGCTGCGTCG
CAAGTGGACGACAACCACCGCCGGAGAGTCGTCGGGGTGTGTTATTGTCC
CACGCGTGTAGCTGTCCTTGGTAACCAGGCCCCCGCTTGTTGAAGTGGTC
TCTTATTACAGCAGTGCTGGCTATGAACTGTAATGCTAGCGAGCGTTTAG
TAGACCGGCGGCGTCGGTGCTGGAGGGGGCGTGGAACCCTCATATCATTC
CCTTTGCGATGATCCATCTGTCTCAGGGAGACAGACACACACCCGCCTCC
CAGCATAACTACCTTTTTTTCGTGTCCTGTTTTCGCTTATCCCCATGACA
CGGCGCCATCTGCTCCCCTCCCGTCTGCTGCCCCCCCTTCCCGTACAGCT
GGAGCTTGCGAGGAAGCCTCGCGTGGTAAGCATGACGGCCATCTGCGCCG
ATGTGAAGGAGCTGGGCAACAGCCTGGTAGAGCAGAGCAAGGACGCCCGC
GACGACATCGTCAAGCGGGCTTCGGAGAAGGTGGAGATGGTGAGAGAGGA
AGACTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11875:86..3392+

>mRNA_E-fasciculatus_F_contig11875.1466.1 ID=mRNA_E-fasciculatus_F_contig11875.1466.1|Name=mRNA_E-fasciculatus_F_contig11875.1466.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1188bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11875:86..3392+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCCACGGTCGAGAAGCAGTCCCAGGTGCTAGACGCTGCCGGTGGAGA
GAAGGGCATCCTTTCGCTAAGGGAGGCGGCCTCCTCGGCGGGAGATGCGA
CGGACCTTCTGCACCAGGCACAGGCGGAGGCGGCAGCCGCTAGGGAGGAT
GCGGCTGCCGCGAGGGGGGAGGTCGAGGTTGCGAAGCAGGAGGCCGAGGC
GGCGAAGGAGAGCGGGGCGAACGCGGGCAGCGAGGCGGCCGCCGCTCGGG
AAACGGCGGCGCAAATCGCGGCGGAGAAGCAGGCCACGGTCGAGAAGCAG
TCCCAGGTGCTAGACGCTGCCGGTGGAGAGAAGGGCATCCTTTCGCTAAG
GGAGGCGGCCTCCTCGGCGGGAGATGCGACGGACCTTCTGCACCAGGCAC
AGGCGGAGGCGGCAGCCGCTAGGGAGGATGCGGCTGCCGCGAGGGGGGAG
GTCGAGGTTGCGAAGCAGGAGGCCGAGGCGGCGAAGGAGAGCGGGGCGAA
CGCGGGCAGCGAGGCGGCCGCCGCTCGGGAAACGGCGGCGCAAATCGCGG
CGGAGAAGGACGCTTTGCAGGGCAAGCTCGACGCAGCGGACAAGGAACTG
GAGACCCTAAGGAACAACCTTACCAGGTCTGAAGCGAACGAGTCCAAGGC
GAGAGAGGAGCACGACAGACACGCGCAGGAGATGCGGGGCAAGCTTGAGA
GGACGGCCTCGGAGGACGCTTTGCAGGGCAAGCTCGACGCAGCGGACAAG
GAACTGGAGACCCTAAGGAACAACCTTACCAGGTCTGAAGCGAACGAGTC
CAAGGCGAGAGAGGAGCACGACAGACACGCGCAGGAGATGCGGGGCAAGC
TTGAGAGGACGGCCTCGGAGCTGGAGCTTGCGAGGAAGCCTCGCGTGGTA
AGCATGACGGCCATCTGCGCCGATGTGAAGGAGCTGGGCAACAGCCTGGT
AGAGCAGAGCAAGGACGCCCGCGACGACATCGTCAAGCGGGCTTCGGAGA
AGGTGGAGATGGTGAGAGAGGAAGACTAACTGGAGCTTGCGAGGAAGCCT
CGCGTGGTAAGCATGACGGCCATCTGCGCCGATGTGAAGGAGCTGGGCAA
CAGCCTGGTAGAGCAGAGCAAGGACGCCCGCGACGACATCGTCAAGCGGG
CTTCGGAGAAGGTGGAGATGGTGAGAGAGGAAGACTAA
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