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Homology
BLAST of mRNA_E-fasciculatus_F_contig1187.1462.1 vs. uniprot
Match: A0A6H5KKS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS0_9PHAE) HSP 1 Score: 428 bits (1101), Expect = 1.180e-147 Identity = 213/227 (93.83%), Postives = 218/227 (96.04%), Query Frame = 2
Query: 50 MYATSLPPRPNPHARTAENYAPRFSPDELPLLPVNWVPSCRSPPSKIWGD-AGVKRGEHGATVAATCYASDAAAAARPRTTGSIGFVRDSSAREMWSTLRDNCTGRLHASQTHNISDRSIDSGLIPPHLLDGSVPPPQGKRASSLDYFPPCVRPATVPAIRMGHQYSRLLRDTPAKRLEAYKRGDVLRDGPVRIVRHTSKDRTFMKKSAHRNPRGISRNVLGGFCTS 727
MYATSLPPRPNPHARTAENYAPRFSPDELPLLPVNWVPS RSPPSKIW D AGVKRGE+GAT AATCY S++AAAARPRTTGSIGFVRDSSAREMW TLRDNCTGRLHA QTHNISDRSIDSGLIPPHLLDGSVPPPQGKRA+SLDYFPPCVRPATVPAIRMGHQY RL+RDTPAKRLEAYKRG VLRDGPVRIVRHTSKDRTFMKKSAHRNPRGISRNVLGGFCTS
Sbjct: 1 MYATSLPPRPNPHARTAENYAPRFSPDELPLLPVNWVPSWRSPPSKIWEDPAGVKRGENGATTAATCYVSESAAAARPRTTGSIGFVRDSSAREMWGTLRDNCTGRLHAVQTHNISDRSIDSGLIPPHLLDGSVPPPQGKRATSLDYFPPCVRPATVPAIRMGHQY-RLIRDTPAKRLEAYKRGAVLRDGPVRIVRHTSKDRTFMKKSAHRNPRGISRNVLGGFCTS 226
BLAST of mRNA_E-fasciculatus_F_contig1187.1462.1 vs. uniprot
Match: D8LIB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB8_ECTSI) HSP 1 Score: 213 bits (542), Expect = 2.430e-64 Identity = 112/149 (75.17%), Postives = 114/149 (76.51%), Query Frame = 2
Query: 377 QTHNISDRSIDSGLIPPHLLDGSVPPPQGKRASSLDYFPPCVRPATVPAIRMGHQYSRLLRDTPAKRLEAYKRGDVLRDGPVRIVR--------------------------------HTSKDRTFMKKSAHRNPRGISRNVLGGFCTS 727
QTHNISDRSIDSGLIPPHLLDGSVPPPQGKRA+SLDYFPPCVRPATVPAIRMGHQY RL+RDTPAKRLEAYKRG VLRDGPVRIV HTSKDRTFMKKSAHRNPRGISRNVLGGFCTS
Sbjct: 3 QTHNISDRSIDSGLIPPHLLDGSVPPPQGKRATSLDYFPPCVRPATVPAIRMGHQY-RLIRDTPAKRLEAYKRGAVLRDGPVRIVSADYHWLHAICGQQPRPLPTGNDQQSESGSIPLHTSKDRTFMKKSAHRNPRGISRNVLGGFCTS 150
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-24_001550.1 |
| Exons | 5 |
| Model size | 1353 |
| Cds size | 681 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1187.1462.1 >prot_E-fasciculatus_F_contig1187.1462.1 ID=prot_E-fasciculatus_F_contig1187.1462.1|Name=mRNA_E-fasciculatus_F_contig1187.1462.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=227bp
MYATSLPPRPNPHARTAENYAPRFSPDELPLLPVNWVPSCRSPPSKIWGD AGVKRGEHGATVAATCYASDAAAAARPRTTGSIGFVRDSSAREMWSTLRD NCTGRLHASQTHNISDRSIDSGLIPPHLLDGSVPPPQGKRASSLDYFPPC VRPATVPAIRMGHQYSRLLRDTPAKRLEAYKRGDVLRDGPVRIVRHTSKD RTFMKKSAHRNPRGISRNVLGGFCTS* back to topmRNA from alignment at E-fasciculatus_F_contig1187:8942..14080+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1187.1462.1 ID=mRNA_E-fasciculatus_F_contig1187.1462.1|Name=mRNA_E-fasciculatus_F_contig1187.1462.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5139bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1187:8942..14080+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ACTGCACCGAGCAGGCTCCTTTGCTGCTGTTGGCAGCAGTTTATGCGACA
TGTACGCGACGAGCCTCCCACCACGCCCCAACCCTCACGCTCGAACCGCA
GAGAACTACGCACCGCGGTTCTCTCCTGACGAGCTCCCCCTGCTACCTGT
CAACTGGGTCCCCTCCTGTAGGTCTCCTCCGTCCAAAATATGGGGAGACG
CTGGCGTAAAGCGTGGCGAACACGGGGCAACCGTCGCTGCTACCTGTTAC
GCGTCGGACGCTGCCGCCGCTGCCCGGCCCCGGACAACGGGGTGAGAGAG
AACAAATCCTAGTGTTGTGTTGCGGCGGTTTAGGTCGGGCGCTGAGTAGG
ATCATGGCCGGGTGAGTGTCTTGAGCTGCTGCCGATGTTTCGCCATAATA
ATGCCGAGAAGCCTGTTGTACACAGAAGCATTCACGCGTACGTGCAATGC
TTGCCCCCACTCGCCATCGTGTTTCCCCTCTGTGATTTATGCCTCGTGTC
TCCTTGTGGCTCCATGCGGATAGATCGATAGGATTTGTGAGGGACTCGTC
TGCGAGGGAGATGTGGAGCACTCTTCGCGACAATTGCACTGGACGACTCC
ATGCCTCGCAGGTGGGTGCCTGTTATCATAGCCTTTTCGAGGTGGACAAT
AACCTCTGGAACGTGTAATAGACTTTATGGCGGTACTCATAGAAGAACAA
TATAATAAGTCGTCGTCTCTTGTCGTTGACACAAAAGACGCCAGCGCATC
CTTCGAATGGTTGGGTGCTGTTGGAGCATGTAGACGATGTATGCTACGGA
ACAAAACAATTGCTGCTGCTCTGAACCTCTTCGTGTGAGGGAGAACTCAG
AATATGAACCTACACCTAGCACCTCTATTTTACGCGGCCGTAGCACCTCC
GGAGAGTTCTGCATGGGTTGTGCAAACCCTACTGTCGGGTGTGGTTTTAT
GTATATCTTTGTCTACGGTAGTGCATAGACTACATATGATCGAGACCTCT
TCCATCGCCGACGCACCTGGGATTACTTGTAACTCTTGTAGTTATTCGAC
TGCTGCACTTATGGAAAATGGCCCACAGCCTTTCCGAAGGCTTCTGAAGG
GTTTCAACCTTAGTGGTTTTATGGAGTGGCAGACTCAATCCGGCAGCCAA
AGAACATATTCTTCGTGGGTATTGGCGCCAACTGTGACCCTGTTTCCTCA
ATTGGTAAAGATCTTGTTTGCAGTGTGCTTGCGACCGCCAAAAATTGTTC
CAGGCCCTCTGAAGAGTAAGAAAAAGGGCGTATTAGGTACAATATTGCTT
AGGACAATGCTCCAGTGAAGACAACAACAACCAGAACAACGCCAATCTCC
CCCGAACTCCGAGTGTTGAGTCAGCAACATTTACATTTTGGAGTGGTGAG
AGAGTACTAGCTTGAATTTTGCGACCCGCAGTGTGAGTCTAGCAATGTTT
AATAAAAAACAAGTATCAGGATTGGAAGCGTTGTGAATGTGTCAAACTGC
TGTAAGCTAACGAGGCGTCGAAGCTGAACAGGCATGGATTTGTTTTCTTC
ATGAAGTGCATTGCTGTTCACGACACTTTGCTACAGGTGTAGTACTGGTG
TAGAGCAATAGCGCACAAGTTTGGTCGGGAATTTTGGCGACGGCGCTCCT
CTCTCGAAATGTGTGTCGAGCCTACCATGGCGGGTTCTTATCTCAGAGGG
GGGAGTCAAACCTTTCTTTCCTGGGTTTTGTGTAGGACAAAACATTTGCA
AGGGATGGGGTAGAAAAAGTACCGTGGCGCGCGACAACCAAGTAAGGTGT
TCCGGCAACAACCTTGGGCCCAGGCAACGCCCCCCATCGGGTTGTGCATC
TTCGGAAAACGTGCAAAATGACAGCCGTTTTTTGAGCGTGACGCCTTCTC
CCGGCACCCCGTTTCTCTTCTTGGTGTCGAGTTAAATTCTGGTGCAACGG
CCACTACCCACAGATATGCTCATTCGAGACTAGCTGCGACTAGTCCCACA
CAACGGAATCACTGACCGACACAATAAGCACAGCAGTCCCTTCTTCGTCG
GGCAAGAGATCGCCGTCTAGGGTCAAACCTCAGCTTCAACTTTGAACACT
ATATCAAACCCTCCCCAACAAAAATCACGAACAGCTTACTCCCCGCCTGC
CTCTGCTCTCTCAAACCACACGTCAGACCCACAACATCTCCGACAGGAGC
ATTGACTCGGGGCTCATCCCACCGCATCTCCTAGACGGTAGCGTACCCCC
TCCCCAGGGGAAGAGGGCTTCTAGCCTGGACTACTTCCCGCCGTGCGTGC
GACCAGCCACCGTTCCCGCTATCCGCATGGGGCACCAATACAGGTGAATC
TCCCGCGTAGCAATGGGGATTTCGTTCCTCTAGTGTCGGCCTCTCAATGA
TTCTTTAAGAACATGGAAGCCGATACTTACCTTTGAGAAGCGTGCGTCTG
CTATCGCGGGCTGCGGGGTTTGCTCCGAGGTTCAACGGCTGCCTTTTTCC
AGGAAGCACGTTATGGCGGCTCGGTTGTGGACTTGAGGGCCCAGCACTGC
ACCGGGTTTCGCTGTATTCGGGGATTTCATCAATCACGACTTTGCATGGC
AGTACGAACAGCTCGCTGGACACACGTTCCGTTTCGATTGTGCGGGGGAA
TTAAGGGCCCTTCAACTTAAATGGGTGAATCATCAAAGCGATTTGCATCT
ACAACATTATACCGGGAGATTAGTTCTGATTGGATTGGATGCTATGCTGT
CCATGGCGGGAGCAGGCTGCTCCGGGATACTCCTGCGAAGCGGCTGGAAG
CTTACAAGAGAGGAGACGTGCTTCGAGATGGGCCCGTCCGCATCGTCAGG
TGTGTACGCGCGTTTCGGTGGATGTTTGGTGGCCTCACATACACCGGCCG
TGCCAACCGCAGCACTAATCAACACTGGTCACCAGCCATGTGTGGGTTAA
AGCCGCGGGTGCTCCCGATCGGGAATGGTCGGCAATCGGAGAGCGGCCCT
ATCCCGTATACTGAGCACAGAAGTATAAACACTCGTGGCGGCATCTGCAT
AGAGAGGTACCCTTTTCACAATGTCTTGGGGGTGCATCCGTGTTTGCGCG
TGAGTCAGTGCTATCTTCCGGCATGTTGGCCTACCCAACAGTCCACGCTC
AACCCTGCCTGATCTCCTCAACTCTCTTCGACAAGGTGGAAGCTTGACAA
CAGACAGCACGTTTTGACCCTGTGCCTCGCCGCCGTTCTGTATCTATTTC
AATCGGTACGTTTAGCTGAAATGATGCCTCCGAAAAAGCCACGAAAAACC
AACCGACAGATGCTTACCAGGTCAGTGGACGATGCGGAAGCCTGCTGAAC
CATTGAGTTATTGTACCGCGCAAACTTACAGTATAACGTCGGAGCCTGCA
CCTCTGCATCCTGCGGACGAAGTCTCTCCTCGTGATGCATCATGCCGTCA
GGGAGGGTTAGCAACGTGTTTCATGTCCAGTAGACCGCGCCCTGTGCAAA
GTCGTACGCACATGTGTTGTCTACTATGCCCCGCGAAATGTTTGCCACTC
AACAGAAATGCCCGAGCCGTACATTGAATGATTGTTGTGGACGGTATGTT
TCCGTCGAAGAAACCTTTCGATACTCGTGCTTCGCGCGCGATCACATTAA
TAACAGGTCTACGCTCAGAACGTTCTAATATCCTGTCACGCATGATATAA
GTGGATGTGTGTTTTCCTCCCATAAGGCTCCCCCTTGGTATCCTTAGATG
GCCTATTTCAACTTGGGCTACCAAAGAGCTACCAAACTGAACGAACGCCG
TTTCGGGACGCTGTTTACACCTGAACCGCGGCTTAATTTCTATTCTGCTC
GCTAACCTATACGGTTTGGCACTGCTACTGCTGCCTACTGCCTTGAGTTT
TGGGGCACGAAGGCATCCCGCGAAAGGACTCCGCTGTACACCGATAACTG
TAAGCGGGAGATATCTCTTTGTGTCGAAATAGCGGCGCCACAGGAGGTCA
AGCCTCACGCTACCACCTCAGAAGGGGTTGGCGTCTCCAACGATTTCGTT
GGAGGTGGAGAACACGTCTGCTGAAACCGCGCCTGTTCGCTCCCGCATCC
GGACGAGCCCGGTTCCACCAAGACTGCCGGTGAACAGAGGCCCATGTGTG
GCGAACGCTATACTAATCAACGTTGGCTCCGCCAGGGACACACGAGGCGT
GCCTGTGGTAACCCATTCGCCCACCACCACGATATGAACGATGCGCTCGG
CCTGATTCTAACCTCGCATTACTCCTCCTCACCCCCCGGGGCCCCTGTTG
ACATTTTGGACACCAACATGTACGGTCTTGGAGTGTTTCAGATCCACCCT
CACCTCATATACACACCCACGCGTTTTGTCCCCGTCGTGCCTCTTGCTTG
GGAAACGCGTGCACGCCAGGCACACCTCCAAGGACCGGACGTTCATGAAG
AAGAGCGCGCACAGGAATCCTCGGGGCATCTCCCGTAATGTCTTGGGCGG
CTTCTGCACGTCGTAGAAAACAGCGGGAGCTTTATCTCTTGGGGAATGTG
CAAAAAATATCGATGTTTGTGTTGTCTTGTTAATAGTAAAAATTCCCAGG
GTTTCGGCCAAGGAGGGATGTTTTCAGGCGGTACAAAGATCTCCGCACAG
CCACACAAGGTGGCTGCTGAACCCTCATGGATCCCGTCGCCCTTCTCCCT
TCTGACTTTTGTAGCCCCAAACTAAAAGTTGGGTCGATGCTGCTATTTGT
ATGCATAGCTCGATACGTATCGTGCTCCCGAACAATGTGGTGTGCCACTG
TCTCTATCCTTGTCGCTCGAAATGGGCCGCTTTCTTCCCGGCCGTGGGCA
AGTAATATCTTTGTTTTTCTCTTTATGTACGCGTGAAACGTCGGCGAGAG
CGACTATCGGTTCTCTTTTGGCGTGGACGAGTGGGTTCATGTGTGTTTTC
GGAGGATATAATCCTCTCTGTTTCGTTTCGTGCGGCGTGGAGCGTGCAAG
AGTGCGCCGTGCCGCGGCCAGGTTGCCATTTGTTTTGTTGGATAGAGTGG
TTTGAACATCGTGCTGTCGTGCGTAGAGATAGATGTTTGTGCGACAAAAC
AAGGAGTCATCACATTTCCCAAAAACGTGATAGTGCTGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1187:8942..14080+ >mRNA_E-fasciculatus_F_contig1187.1462.1 ID=mRNA_E-fasciculatus_F_contig1187.1462.1|Name=mRNA_E-fasciculatus_F_contig1187.1462.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1362bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1187:8942..14080+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGTACGCGACGAGCCTCCCACCACGCCCCAACCCTCACGCTCGAACCGC AGAGAACTACGCACCGCGGTTCTCTCCTGACGAGCTCCCCCTGCTACCTG TCAACTGGGTCCCCTCCTGTAGGTCTCCTCCGTCCAAAATATGGGGAGAC GCTGGCGTAAAGCGTGGCGAACACGGGGCAACCGTCGCTGCTACCTGTTA CGCGTCGGACGCTGCCGCCGCTGCCCGGCCCCGGACAACGGGATGTACGC GACGAGCCTCCCACCACGCCCCAACCCTCACGCTCGAACCGCAGAGAACT ACGCACCGCGGTTCTCTCCTGACGAGCTCCCCCTGCTACCTGTCAACTGG GTCCCCTCCTGTAGGTCTCCTCCGTCCAAAATATGGGGAGACGCTGGCGT AAAGCGTGGCGAACACGGGGCAACCGTCGCTGCTACCTGTTACGCGTCGG ACGCTGCCGCCGCTGCCCGGCCCCGGACAACGGGATCGATAGGATTTGTG AGGGACTCGTCTGCGAGGGAGATGTGGAGCACTCTTCGCGACAATTGCAC TGGACGACTCCATGCCTCGCAGATCGATAGGATTTGTGAGGGACTCGTCT GCGAGGGAGATGTGGAGCACTCTTCGCGACAATTGCACTGGACGACTCCA TGCCTCGCAGACCCACAACATCTCCGACAGGAGCATTGACTCGGGGCTCA TCCCACCGCATCTCCTAGACGGTAGCGTACCCCCTCCCCAGGGGAAGAGG GCTTCTAGCCTGGACTACTTCCCGCCGTGCGTGCGACCAGCCACCGTTCC CGCTATCCGCATGGGGCACCAATACAGACCCACAACATCTCCGACAGGAG CATTGACTCGGGGCTCATCCCACCGCATCTCCTAGACGGTAGCGTACCCC CTCCCCAGGGGAAGAGGGCTTCTAGCCTGGACTACTTCCCGCCGTGCGTG CGACCAGCCACCGTTCCCGCTATCCGCATGGGGCACCAATACAGCAGGCT GCTCCGGGATACTCCTGCGAAGCGGCTGGAAGCTTACAAGAGAGGAGACG TGCTTCGAGATGGGCCCGTCCGCATCGTCAGCAGGCTGCTCCGGGATACT CCTGCGAAGCGGCTGGAAGCTTACAAGAGAGGAGACGTGCTTCGAGATGG GCCCGTCCGCATCGTCAGGCACACCTCCAAGGACCGGACGTTCATGAAGA AGAGCGCGCACAGGAATCCTCGGGGCATCTCCCGTAATGTCTTGGGCGGC TTCTGCACGTCGTAGGCACACCTCCAAGGACCGGACGTTCATGAAGAAGA GCGCGCACAGGAATCCTCGGGGCATCTCCCGTAATGTCTTGGGCGGCTTC TGCACGTCGTAG back to top
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