mRNA_E-fasciculatus_F_contig1187.1461.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1187.1461.1
Unique NamemRNA_E-fasciculatus_F_contig1187.1461.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: D8LMY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMY7_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.540e-61
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:    1 MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAALE 315
            MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFR+VEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGT+RDNLDPFGL DDVTIWAALE
Sbjct:  319 MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRIVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTIRDNLDPFGLSDDVTIWAALE 423
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: A0A6H5L328_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L328_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.700e-60
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:    1 MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAALE 315
            MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSL IDGVDGLR+GLQDLRKAISIIPQDPVMFCGT+RDNLDPFGLCDDVTIWAALE
Sbjct: 1321 MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLMIDGVDGLRIGLQDLRKAISIIPQDPVMFCGTIRDNLDPFGLCDDVTIWAALE 1425
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: A0A835YM87_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM87_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.200e-43
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAAL 312
            +RYRP LDLVL  V+ +++GGE+IGIAGRTGSGKSSLM  LFR+VEPC GS+ IDGVD LRVGL DLR A+SIIPQDPVMF GT+R NLDPFG  DD  +WAAL
Sbjct: 1056 LRYRPDLDLVLNNVTFEVRGGEKIGIAGRTGSGKSSLMTALFRIVEPCAGSIEIDGVDALRVGLDDLRNALSIIPQDPVMFQGTLRQNLDPFGTYDDARLWAAL 1159
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: A0A147B8W2_9ACAR (Multidrug resistance (Fragment) n=1 Tax=Carios mimon TaxID=360319 RepID=A0A147B8W2_9ACAR)

HSP 1 Score: 137 bits (344), Expect = 3.640e-39
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:    4 RYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAALE 315
            RYRPGLDLVL GV LDI  GE+IG+ GRTG+GKSSL ++LFR++E  GG +T+DGVD   VGL DLR  + IIPQDPV+F GT+R NLDP G   D  IWAALE
Sbjct:   27 RYRPGLDLVLCGVDLDINPGEKIGVVGRTGAGKSSLTLSLFRIIESAGGRITVDGVDISSVGLHDLRSRLGIIPQDPVLFSGTLRFNLDPNGDYSDSDIWAALE 130
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: A0A368FPG4_ANCCA (ABC transporter domain-containing protein (Fragment) n=1 Tax=Ancylostoma caninum TaxID=29170 RepID=A0A368FPG4_ANCCA)

HSP 1 Score: 140 bits (352), Expect = 1.250e-38
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:    4 RYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAALE 315
            RYR GLDLVLKG+S D++ GE++GI GRTG+GKSS  + LFRM+EP  G + IDGVD   VGL DLR+ ++IIPQDPV+F GT+R NLDPFG   D  IW+ALE
Sbjct:  181 RYREGLDLVLKGISADVREGEKVGIVGRTGAGKSSFALALFRMIEPASGRIVIDGVDIAAVGLHDLRRNLTIIPQDPVLFSGTLRFNLDPFGANTDTEIWSALE 284
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: A0A7R9JF75_TIMCA ((California timema) hypothetical protein n=1 Tax=Timema californicum TaxID=61474 RepID=A0A7R9JF75_TIMCA)

HSP 1 Score: 137 bits (345), Expect = 4.210e-38
Identity = 64/104 (61.54%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:    4 RYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAALE 315
            RYR GLDLVL+G+S  ++GGE++GI GRTG+GKSSL + LFR++E  GGS+ IDG+D  R+GL  LR  ++IIPQDPV+F GT+R NLDPFG   D  +WAALE
Sbjct:   30 RYREGLDLVLRGISFTVQGGEKVGIVGRTGAGKSSLTLGLFRIIEAAGGSIHIDGMDISRLGLHTLRSRLTIIPQDPVLFSGTLRQNLDPFGRLSDEDVWAALE 133
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: A0A2A2M017_9BILA (Uncharacterized protein n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2M017_9BILA)

HSP 1 Score: 143 bits (360), Expect = 4.330e-38
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:    4 RYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAALE 315
            RYR GLDLVLKGV+ D+  GE+IGI GRTG+GKSS  + LFRM+EP GG++ IDGVD  ++GL DLR  I+IIPQDPV+F GT+R NLDPF  C D  IW ALE
Sbjct:  352 RYREGLDLVLKGVTADVSAGEKIGIVGRTGAGKSSFALALFRMIEPAGGTIVIDGVDVTQIGLHDLRGNITIIPQDPVLFSGTLRFNLDPFNNCSDEQIWEALE 455
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: A0A2A2KAJ6_9BILA (ABC transmembrane type-1 domain-containing protein n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2KAJ6_9BILA)

HSP 1 Score: 143 bits (360), Expect = 5.050e-38
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:    4 RYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAALE 315
            RYR GLDLVLKGV+ D+  GE+IGI GRTG+GKSS  + LFRM+EP GG++ IDGVD  ++GL DLR  I+IIPQDPV+F GT+R NLDPF  C D  IW ALE
Sbjct:  391 RYREGLDLVLKGVTADVSAGEKIGIVGRTGAGKSSFALALFRMIEPAGGTIVIDGVDVTQIGLHDLRGNITIIPQDPVLFSGTLRFNLDPFNNCSDEQIWEALE 494
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: A0A7S0H158_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0H158_MICPS)

HSP 1 Score: 144 bits (364), Expect = 5.460e-38
Identity = 66/105 (62.86%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    1 MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAALE 315
            MRYRPGL LVL+GVS D++ GE++GI GRTGSGKS+L+V L+R+VEPCGGS+T+DGVD   + L+DLR  ++ IPQDP++F G +RDNLDPF    D T+W ALE
Sbjct: 1239 MRYRPGLPLVLRGVSFDVRAGEKVGICGRTGSGKSTLIVALWRLVEPCGGSITLDGVDVQNITLKDLRSRVTCIPQDPILFSGNVRDNLDPFKEHSDETLWFALE 1343
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BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Match: A0A7R9FGG1_9NEOP (Hypothetical protein n=1 Tax=Timema tahoe TaxID=61484 RepID=A0A7R9FGG1_9NEOP)

HSP 1 Score: 135 bits (341), Expect = 6.580e-38
Identity = 65/105 (61.90%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:    1 MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGGSLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTIWAALE 315
            +RYR GLDLVLKGVS  I+GGE++GI GRTG+GKSSL + LFR++EP GGS+ ID VD  ++GL  LR  I+IIPQDPV+F G++R NLDP G   D  +W ALE
Sbjct:   53 LRYREGLDLVLKGVSFSIRGGEKVGIVGRTGAGKSSLTLALFRIIEPAGGSILIDDVDISQLGLHALRSRITIIPQDPVLFSGSLRQNLDPHGRLTDEALWRALE 157
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1187.1461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMY7_ECTSI1.540e-6197.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L328_9PHAE1.700e-6097.14ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YM87_9STRA2.200e-4373.08P-loop containing nucleoside triphosphate hydrolas... [more]
A0A147B8W2_9ACAR3.640e-3965.38Multidrug resistance (Fragment) n=1 Tax=Carios mim... [more]
A0A368FPG4_ANCCA1.250e-3863.46ABC transporter domain-containing protein (Fragmen... [more]
A0A7R9JF75_TIMCA4.210e-3861.54(California timema) hypothetical protein n=1 Tax=T... [more]
A0A2A2M017_9BILA4.330e-3865.38Uncharacterized protein n=1 Tax=Diploscapter pachy... [more]
A0A2A2KAJ6_9BILA5.050e-3865.38ABC transmembrane type-1 domain-containing protein... [more]
A0A7S0H158_MICPS5.460e-3862.86Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7R9FGG1_9NEOP6.580e-3861.90Hypothetical protein n=1 Tax=Timema tahoe TaxID=61... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1187contigE-fasciculatus_F_contig1187:5877..6979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue4.3e-52
Seed eggNOG ortholog2880.D8LMY7
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionABC transporters
Ec32 orthologEc-02_004160.1
Exons3
Model size315
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1187.1461.1prot_E-fasciculatus_F_contig1187.1461.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1187 5877..6979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927697.5935993-CDS-E-fasciculatus_F_contig1187:5876..59631622927697.5935993-CDS-E-fasciculatus_F_contig1187:5876..5963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 5877..5963 -
1695995654.3773139-CDS-E-fasciculatus_F_contig1187:5876..59631695995654.3773139-CDS-E-fasciculatus_F_contig1187:5876..5963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 5877..5963 -
1622927697.6139946-CDS-E-fasciculatus_F_contig1187:6544..67151622927697.6139946-CDS-E-fasciculatus_F_contig1187:6544..6715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 6545..6715 -
1695995654.3876762-CDS-E-fasciculatus_F_contig1187:6544..67151695995654.3876762-CDS-E-fasciculatus_F_contig1187:6544..6715Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 6545..6715 -
1622927697.628978-CDS-E-fasciculatus_F_contig1187:6922..69791622927697.628978-CDS-E-fasciculatus_F_contig1187:6922..6979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 6923..6979 -
1695995654.396591-CDS-E-fasciculatus_F_contig1187:6922..69791695995654.396591-CDS-E-fasciculatus_F_contig1187:6922..6979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1187 6923..6979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1187.1461.1

>prot_E-fasciculatus_F_contig1187.1461.1 ID=prot_E-fasciculatus_F_contig1187.1461.1|Name=mRNA_E-fasciculatus_F_contig1187.1461.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MRYRPGLDLVLKGVSLDIKGGERIGIAGRTGSGKSSLMVTLFRMVEPCGG
SLTIDGVDGLRVGLQDLRKAISIIPQDPVMFCGTMRDNLDPFGLCDDVTI
WAALE
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mRNA from alignment at E-fasciculatus_F_contig1187:5877..6979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1187.1461.1 ID=mRNA_E-fasciculatus_F_contig1187.1461.1|Name=mRNA_E-fasciculatus_F_contig1187.1461.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1103bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1187:5877..6979- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCTACCGCCCCGGGCTCGACCTCGTGCTCAAGGGGGTCTCCCTCGA
CATCAAGGTATGTATCTACGATATCTACGATACGATAAGGCGTTTTTTGG
CGACGCAGGCGTGCTTGTCGTTCATGCGTGCTGGCCACCATCGTGCCTCG
CCATCGAGCCTAGAGGACCCCCCGCACCGACCGGTGGTTTGAGGAAGGCC
GCATGCATGCACACTTGACACGATTGATTCCTGTTTTTGATTGCCTTGTT
CGGTGTCCCTGTAGGGAGGAGAGCGGATAGGCATCGCCGGCCGGACCGGT
TCGGGCAAGTCTTCCCTCATGGTCACCCTGTTCAGGATGGTGGAGCCGTG
CGGCGGCAGCCTGACGATCGACGGGGTGGACGGGCTGAGGGTGGGGCTAC
AGGACCTTCGGAAGGCCATCTCCATCATCCCTCAGGTGCCTGTCCTTGTC
CTTGTCCTTGTCGATGTTGTTTGATGTTGTTGGTGTTGTTCTTGCCGGTG
CTGCTTGCATTTCGTTGGTTGTGGGTGTTTTCTATGAATGTTGGCGTTGG
TGCTGGTGGTGCTGGTGTCGGTGTTGTTATTTGATGTTGTTGCTCGTTTT
TTTTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTG
TTGTTGTTGTTGTTGTTTTTGCTTCTACTGATGCTGTTGATGTTGTTGGT
GGTTTTGCTTCTGCCGGTGCTGTAGCCGTTCTCGTTCTTTGTTCGTTGTT
CTTGCTGCTGCTGTCGTTTGCTATTTTTTCGGTTTGTTGTTGTCGTGATA
CAGCAGTGTGTGTTTTGCCGTCGTCTGCATGTTGTTATTGTTTGTGTTAG
GAGTAAGGGCTAGGGTTAAATTTATTGTTGTATTGGCGCTGTTAATACAC
AGTGTGGCGGTGCTCCCCACCGGGTAACCGTTAAACCAGTACACACCACG
ATCTCGAAGCACACTCATCACGCCCAACCCCCAACTCGCGACATGCATGA
CCCCCTCACACTACAGGACCCCGTCATGTTCTGCGGGACAATGCGGGACA
ACCTCGACCCGTTCGGGCTTTGCGACGACGTTACCATCTGGGCCGCCCTG
GAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1187:5877..6979-

>mRNA_E-fasciculatus_F_contig1187.1461.1 ID=mRNA_E-fasciculatus_F_contig1187.1461.1|Name=mRNA_E-fasciculatus_F_contig1187.1461.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1187:5877..6979- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCTACCGCCCCGGGCTCGACCTCGTGCTCAAGGGGGTCTCCCTCGA
CATCAAGATGCGCTACCGCCCCGGGCTCGACCTCGTGCTCAAGGGGGTCT
CCCTCGACATCAAGGGAGGAGAGCGGATAGGCATCGCCGGCCGGACCGGT
TCGGGCAAGTCTTCCCTCATGGTCACCCTGTTCAGGATGGTGGAGCCGTG
CGGCGGCAGCCTGACGATCGACGGGGTGGACGGGCTGAGGGTGGGGCTAC
AGGACCTTCGGAAGGCCATCTCCATCATCCCTCAGGGAGGAGAGCGGATA
GGCATCGCCGGCCGGACCGGTTCGGGCAAGTCTTCCCTCATGGTCACCCT
GTTCAGGATGGTGGAGCCGTGCGGCGGCAGCCTGACGATCGACGGGGTGG
ACGGGCTGAGGGTGGGGCTACAGGACCTTCGGAAGGCCATCTCCATCATC
CCTCAGGACCCCGTCATGTTCTGCGGGACAATGCGGGACAACCTCGACCC
GTTCGGGCTTTGCGACGACGTTACCATCTGGGCCGCCCTGGAGGACCCCG
TCATGTTCTGCGGGACAATGCGGGACAACCTCGACCCGTTCGGGCTTTGC
GACGACGTTACCATCTGGGCCGCCCTGGAG
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