mRNA_E-fasciculatus_F_contig1186.1457.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: D7FUR2_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUR2_ECTSI) HSP 1 Score: 472 bits (1214), Expect = 1.830e-167 Identity = 244/264 (92.42%), Postives = 249/264 (94.32%), Query Frame = 1
Query: 1 MKSFVAAA-SLCALAPASAFVPGA-LPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNPL 786
MKSFVAAA SLCALAPASAFVPGA LPLAGVRSAPSKL+MAATPERSISIPIDPYPEGLDGEMVGD GFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGN+VLG DRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEE+ A + LQE+KHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNPL
Sbjct: 1 MKSFVAAATSLCALAPASAFVPGASLPLAGVRSAPSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEY--------AEKQLQEIKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNPL 256
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: W7TTD7_9STRA (Light-harvesting protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTD7_9STRA) HSP 1 Score: 238 bits (606), Expect = 1.600e-74 Identity = 128/245 (52.24%), Postives = 161/245 (65.71%), Query Frame = 1
Query: 46 ASAFVPGALPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPS-WVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 777
ASAF+ PLA R A + MAA + S ++P D P LDG + GD GFDP GF+NNPP W+ G G+ +KWYREAE+ HGRVAMLAA GW+FP IYH PGN +G D FA +NP A +P AG QI T+ +E R+NR IR D AGD+GLGQGEGRWNPF FNY+EE+ A + LQE+K+GR AM+GI G+ Q V G+GI+ QLG +F P++V+KAGY+F
Sbjct: 59 ASAFI-APTPLA--RRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIG---GSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKE-AGDLGLGQGEGRWNPFGFNYSEEEY--------AEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYF 288
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A836CAI0_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI0_9STRA) HSP 1 Score: 229 bits (585), Expect = 5.250e-72 Identity = 127/256 (49.61%), Postives = 166/256 (64.84%), Query Frame = 1
Query: 19 AASLCALAPASAFVPGALPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPP-SWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNP 783
AA A+APA+AF+P + P+A + + K+ ERS +IP D PE LDG +VGD GFDPAGF+NNPP +W+ G G +KWYREAE+ HGR AMLAA GWI PE HFPGN +G D FA+ NP A ++P+AG QI TI +E R+NR +R + GD+GLGQG NPF FNYTEE+ T + LQE+K+GR AM+ I GM+ Q+ + +G++ QL AF+ PD+V KAGY+F P
Sbjct: 5 AALAFAVAPAAAFLPVSAPVAPAQGSVMKM----VSERSTAIPFDKRPENLDGSLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWIVPEFVHFPGNEQVGVDAFAKTNPWDALYSVPDAGLWQIAATIFAVEVFRINRVVRGGAE-PGDLGLGQGG--LNPFGFNYTEEEYKT--------KQLQELKNGRLAMVAIIGMFLQSAITNEGLIAQLSGAFTFPDAVGKAGYYFPP 242
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A835YWE6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE6_9STRA) HSP 1 Score: 224 bits (572), Expect = 4.420e-70 Identity = 131/262 (50.00%), Postives = 166/262 (63.36%), Query Frame = 1
Query: 1 MKSFVAAASLCALAPASAFVPGALPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPP-SWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNP 783
MK+ A A L A PA+AFVP P+A PSK+ + A ERS +IP D PE LDG +VGD GFDPAGF+NNPP +W+ G G +KWYREAE+ HGR AMLAA GW+ PE HFPGN +G D FA+ NP A ++P+AG QI TI +E R+NR +R D GD+GLGQG NPF F+Y+EE + LQE+K+GR AM+ I GM+ Q + QG++ +L AF+ PD+V KAGYFF P
Sbjct: 1 MKAVAALALLAA--PAAAFVP-VTPVA----TPSKVVLQA--ERSTAIPFDKRPENLDGTLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWVVPEFVHFPGNEAVGVDAFAKTNPWEALYSVPDAGLWQIAATIFAVEVYRINRVVRGDKE-PGDLGLGQGG--LNPFGFDYSEEQYRE--------KQLQEIKNGRLAMVAIIGMFLQAAINQQGLISELSGAFTFPDAVGKAGYFFPP 239
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A6V1NAG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAG2_HETAK) HSP 1 Score: 216 bits (550), Expect = 1.210e-66 Identity = 121/237 (51.05%), Postives = 147/237 (62.03%), Query Frame = 1
Query: 73 PLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPS-WVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPE-IYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 777
PL V ++ S LSM ERS ++P+DPYPEGLDG M GD GFDPAGFANNPP W+ G G + + WYREAELAHGRVAMLA GW FPE YHFPGN + G D FAE NP+ A P G IQI + I +E R+ IR D GD+ LGQ G NPF NY +++ L ++E+KHGR AM+GI GM FQ G + QLG AF+ P++V AGY+F
Sbjct: 23 PLKNVATSTSSLSMMQG-ERSKALPMDPYPEGLDGTMAGDVGFDPAGFANNPPKKWLYGGGENS---LDWYREAELAHGRVAMLATVGWFFPETFYHFPGNEIYGQDIFAEANPIKALSVAPAGGLIQIALVIFFVEVWRIKNVIRGDRA-PGDLNLGQ-RGAINPFGLNYDDDEYF--------LMEVREIKHGRLAMLGIMGMIFQQAATGLSLGQQLGGAFTFPEAVKSAGYYF 245
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A0G4ELJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELJ2_VITBC) HSP 1 Score: 205 bits (521), Expect = 4.040e-62 Identity = 121/252 (48.02%), Postives = 155/252 (61.51%), Query Frame = 1
Query: 1 MKSFVAAASLCALAPASAFVP-GAL----PLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANN-PPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAF 738
M VAA +L A+ A+AFVP G L PL + PS M + +RS+++P+D P LDG + GD GFDP GF+NN P +W+ G G +KWYREAEL H RVAMLAA GWIFPEI+H PGN+ +G D FAE NP A +P G QI T+ +E RL R +R + AGD+GLGQGEGRWNPF F + E++ ++E+K+GR AMI I GM Q V G+G+L Q+GE F
Sbjct: 1 MMKVVAAVALLAVC-ANAFVPQGVLKRDSPLRKSLTRPSMAEMGES-DRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIG---GDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRGEKE-AGDLGLGQGEGRWNPFGFAFDEDEYYRM--------QVREIKNGRLAMIAIIGMMLQAAVTGEGLLEQIGEGF 238
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A0G4H236_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H236_9ALVE) HSP 1 Score: 206 bits (523), Expect = 6.490e-62 Identity = 110/208 (52.88%), Postives = 134/208 (64.42%), Query Frame = 1
Query: 112 MAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANN-PPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGE 732
M+ +RSI++P D YP GLDG + GD GFDPAGF NN P W+ G G +KWYREAE+ H RVAMLA GWIFPEI HF GN+ +G D FAE+NPL A P AG +QI I LE R+ R I+ D+ AGD+GLGQGEGRWNPF FNY+ E+ T +E+K+GR AMIGI M Q G+G+L QLG+
Sbjct: 91 MSDNGDRSIALPFDKYPPGLDGTLAGDYGFDPAGFTNNLPRQWLIG---GEERSLKWYREAEITHARVAMLATLGWIFPEIAHFGGNAQVGQDAFAELNPLKAIYTAPAAGLVQIAFGIFALEYFRIKRVIQGDAA-AGDLGLGQGEGRWNPFKFNYSPEEYKTM--------QTREIKNGRLAMIGILAMIAQANASGEGLLTQLGQ 286
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: F0Y1D8_AURAN (Uncharacterized protein LHC9 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1D8_AURAN) HSP 1 Score: 197 bits (501), Expect = 2.570e-59 Identity = 112/237 (47.26%), Postives = 150/237 (63.29%), Query Frame = 1
Query: 82 GVRSAPSKLSMAATPERSISIPIDPYP---EGLDGEMVGDTGFDPAGFANNPP-SWVQG-EGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 777
G + AP+K + + SIP P LDG +VGD GFDP GF+ P +W QG EG G+ +K +REAEL HGR+A LA GWIFPE+YHFPG D FA+MNP A D IP+AG +QI+ + LE +R+NR ++ + + GD+GLGQGEGRWNPF F+YT E+ + LQE+KH R AM+GI G+ ++ G+L QLGE+FS P+ V+KAG++F
Sbjct: 20 GGKKAPAKAAAPVSRGTGPSIPSIALPWTETNLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWIFPELYHFPGKD----DAFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNR-LKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYD--------KQLQEIKHSRLAMLGIAGLAAKSSGTDIGVLQQLGESFSRPEFVSKAGFYF 240
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A7S2UVQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ7_9STRA) HSP 1 Score: 177 bits (448), Expect = 2.310e-51 Identity = 114/256 (44.53%), Postives = 150/256 (58.59%), Query Frame = 1
Query: 16 AAASLCALAPASAFVPGALPLAGVRSAPSKLSMAATPERSISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPSWVQGEGTGTAAR-VKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQG-QGILHQLGEAFSTPDSVAKAGYFF 777
AAA+L A A AFV A S+ + S+A +SI++P P GLDG + GD GFDP GF NN P+ +G +AR +KWYREAEL HGR+ MLA G IFPEIYHFPGN +G D F+E+N L A+ +P+ QI++ +E RL ++ D AGD+ LGQ G +NP N++EE+ L +E+KH R AMIG G Q G +L QLGEAF+ P++V+KAGYFF
Sbjct: 5 AAAALILSAGAEAFVAPA-------SSAGRTSVAPLNAKSIALPWQEAPPGLDGTLPGDVGFDPFGFTNNLPTT-----SGPSARSLKWYREAELIHGRICMLATLGVIFPEIYHFPGNEGVGMDVFSELNALKAFYTVPDFAIYQILLFAGAVEIWRLRNTVLGDRP-AGDLNLGQ-FGAYNPAKLNFSEEEYF--------LMQTREIKHCRLAMIGFLGQVLQLRANGGTPLLQQLGEAFTVPEAVSKAGYFF 238
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Match: A0A7S0FUH9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FUH9_9STRA) HSP 1 Score: 174 bits (442), Expect = 2.470e-50 Identity = 103/221 (46.61%), Postives = 130/221 (58.82%), Query Frame = 1
Query: 133 SISIPIDPYPEGLDGEMVGDTGFDPAGFANNPPS-WVQG-EGT-GTAARVKWYREAELAHGRVAMLAAAGWIFPEIYH-FPGNSVLGADRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVA---GDIGLGQGEGRWNPFNFNYTEEDVLTQLRYPAALRTLQEMKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYF 774
S ++P P LDG M+GD GFDP GF+ P W G EG G + WYREAEL HGR+A +A G+I P ++ PGN G D ++ NPL A+ +P A +QI + + LE R+N I + G A GD+ +GQGEGRWNPF +YT E+ + LQE+KH R AMIGI G++ Q G GI QLG AFSTPD VAKAGYF
Sbjct: 37 SQALPFATAPATLDGSMLGDAGFDPLGFSTVPVGPWFNGFEGRDGQIGDLSWYREAELIHGRIAQVAVVGFIAPGLFGTLPGNEATGLDAYSNTNPLEAFSQVPGAAILQIFLFMTYLEIKRIN--IIREEGAAYLPGDLRIGQGEGRWNPFGLDYTPEEYDE--------KRLQELKHCRLAMIGIFGLWAQAQASGVGITDQLGAAFSTPDYVAKAGYF 247 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1186.1457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1186.1457.1 >prot_E-fasciculatus_F_contig1186.1457.1 ID=prot_E-fasciculatus_F_contig1186.1457.1|Name=mRNA_E-fasciculatus_F_contig1186.1457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=263bp MKSFVAAASLCALAPASAFVPGALPLAGVRSAPSKLSMAATPERSISIPIback to top mRNA from alignment at E-fasciculatus_F_contig1186:1810..5105+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1186.1457.1 ID=mRNA_E-fasciculatus_F_contig1186.1457.1|Name=mRNA_E-fasciculatus_F_contig1186.1457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3296bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1186:1810..5105+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1186:1810..5105+ >mRNA_E-fasciculatus_F_contig1186.1457.1 ID=mRNA_E-fasciculatus_F_contig1186.1457.1|Name=mRNA_E-fasciculatus_F_contig1186.1457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1186:1810..5105+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |