mRNA_E-fasciculatus_F_contig10142.145.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10142.145.1
Unique NamemRNA_E-fasciculatus_F_contig10142.145.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Match: D8LIC1_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC1_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.120e-35
Identity = 100/142 (70.42%), Postives = 106/142 (74.65%), Query Frame = 3 
Query:    3 KMNNAAGGIGNYSSSEADXXXXXXXXXXXXXXXXXXINNGNSSRGVVDGHEGDIADNVDGFLDEFMALAGGSNDDDYGMMLEEGAGGGAPDISAEDLVFLADMDLADFLPPPLAAEGGGGALLYPSSGHEIEALPSQGGGAS 428
            K NNA GGI N  S EA XXXXXXXXXXXXXXXX    +      VV+GHEGDIADNVDGFLDEFMALAGG ND+DYGMMLE       P IS EDLVFLADMDLADFLPP   AE GG ALL PSS HE+E +PS+GGG S
Sbjct:   36 KANNAGGGIANKYSIEAGXXXXXXXXXXXXXXXXPGKGSSGGRDVVVNGHEGDIADNVDGFLDEFMALAGG-NDEDYGMMLEXXXXX-XPAISEEDLVFLADMDLADFLPPATTAEDGG-ALLSPSSVHEMETVPSEGGGVS 174
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BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Match: A0A6H5KKD0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.860e-27
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:  138 VVDGHEGDIADNVDGFLDEFMALAGGSND-DDYGMMLEEGAGGGAPDISAEDLVFLADMDLADFLPPPLAAEGGGGALLYPSSGHEIEALPSQGG 419
            VV GH+GDIADNVDGFLDEFM LAGG++D +DYGM          P IS EDLVFLADMDLADFLPP + AE G  ALL PSS HE+E LPSQGG
Sbjct:   78 VVGGHDGDIADNVDGFLDEFMVLAGGNDDGNDYGMXXXXXXXX-XPAISEEDLVFLADMDLADFLPPAITAEEGD-ALLSPSSVHEMETLPSQGG 170
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BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Match: D7G0D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D0_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 7.710e-26
Identity = 64/95 (67.37%), Postives = 66/95 (69.47%), Query Frame = 3 
Query:  153 EGDIADNVDGFLDEFMALAGGSNDDDYG--MMLEEGA-GGGAPDISAEDLVFLADMDLADFLP-------PPLAAEGGGGALLYPSSGHEIEALP 407
            EGDIADNVDGFLDEF+ALAG   DDDYG  MMLEEG  GGG   IS EDL +LADMDLADFLP       P      GGGA L PSS HEIE LP
Sbjct:   97 EGDIADNVDGFLDEFIALAG---DDDYGDSMMLEEGCEGGGGAAISEEDLAYLADMDLADFLPAGAAEGAPEAGTSAGGGAPLSPSSAHEIETLP 188
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BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Match: A0A6H5KZS0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.240e-17
Identity = 60/95 (63.16%), Postives = 63/95 (66.32%), Query Frame = 3 
Query:  153 EGDIADNVDGFLDEFMALAGGSNDDDYG--MMLEEGAGG-GAPDISAEDLVFLADMDLADFLPPPLA---AEGGGG----ALLYPSSGHEIEALP 407
            EGDIADNVDGFLDEF+ALAG   DDDYG  MMLEEG  G G   IS E L +LADMDLADFLP   A   +  G G    A   PSS HEIE LP
Sbjct:   94 EGDIADNVDGFLDEFIALAG---DDDYGDSMMLEEGCEGEGGAAISEEGLAYLADMDLADFLPAGSAKGASNAGTGXXXXAPRSPSSDHEIEILP 185
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LIC1_ECTSI3.120e-3570.42CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KKD0_9PHAE1.860e-2769.47CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0D0_ECTSI7.710e-2667.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZS0_9PHAE1.240e-1763.16CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10142contigE-fasciculatus_F_contig10142:1643..2070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCCT domain protein
Ec32 orthologEc-24_001600.1
Exons1
Model size430
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.2989652-UTR-E-fasciculatus_F_contig10142:1642..16471622927515.2989652-UTR-E-fasciculatus_F_contig10142:1642..1647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10142 1643..1647 +
1695995574.167709-UTR-E-fasciculatus_F_contig10142:1642..16471695995574.167709-UTR-E-fasciculatus_F_contig10142:1642..1647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10142 1643..1647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.405146-CDS-E-fasciculatus_F_contig10142:1647..20701622927515.405146-CDS-E-fasciculatus_F_contig10142:1647..2070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10142 1648..2070 +
1695995574.1772072-CDS-E-fasciculatus_F_contig10142:1647..20701695995574.1772072-CDS-E-fasciculatus_F_contig10142:1647..2070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10142 1648..2070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10142.145.1prot_E-fasciculatus_F_contig10142.145.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10142 1648..2070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10142.145.1

>prot_E-fasciculatus_F_contig10142.145.1 ID=prot_E-fasciculatus_F_contig10142.145.1|Name=mRNA_E-fasciculatus_F_contig10142.145.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
MNNAAGGIGNYSSSEADGGGSAAAAAAAAPAKSSSINNGNSSRGVVDGHE
GDIADNVDGFLDEFMALAGGSNDDDYGMMLEEGAGGGAPDISAEDLVFLA
DMDLADFLPPPLAAEGGGGALLYPSSGHEIEALPSQGGGAS
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mRNA from alignment at E-fasciculatus_F_contig10142:1643..2070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10142.145.1 ID=mRNA_E-fasciculatus_F_contig10142.145.1|Name=mRNA_E-fasciculatus_F_contig10142.145.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=428bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10142:1643..2070+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAAGATGAATAACGCCGCCGGCGGCATCGGTAACTACAGCAGTAGCGAG
GCCGACGGTGGCGGGTCCGCCGCCGCCGCCGCCGCCGCCGCGCCGGCTAA
GAGCAGCAGCATCAACAACGGCAACAGCAGCAGGGGCGTTGTCGACGGAC
ACGAGGGAGACATCGCCGACAACGTCGACGGCTTTCTCGACGAGTTCATG
GCTCTCGCCGGGGGCAGTAACGACGACGACTACGGCATGATGTTGGAGGA
GGGGGCTGGGGGAGGGGCCCCCGACATCTCGGCGGAAGACCTGGTATTTC
TGGCGGACATGGACCTGGCCGACTTCCTGCCGCCGCCGCTGGCAGCGGAG
GGAGGCGGCGGTGCGCTTCTGTATCCTTCCTCGGGCCACGAAATCGAGGC
TCTGCCGAGCCAGGGCGGAGGGGCATCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10142:1643..2070+

>mRNA_E-fasciculatus_F_contig10142.145.1 ID=mRNA_E-fasciculatus_F_contig10142.145.1|Name=mRNA_E-fasciculatus_F_contig10142.145.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10142:1643..2070+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATAACGCCGCCGGCGGCATCGGTAACTACAGCAGTAGCGAGGCCGA
CGGTGGCGGGTCCGCCGCCGCCGCCGCCGCCGCCGCGCCGGCTAAGAGCA
GCAGCATCAACAACGGCAACAGCAGCAGGGGCGTTGTCGACGGACACGAG
GGAGACATCGCCGACAACGTCGACGGCTTTCTCGACGAGTTCATGGCTCT
CGCCGGGGGCAGTAACGACGACGACTACGGCATGATGTTGGAGGAGGGGG
CTGGGGGAGGGGCCCCCGACATCTCGGCGGAAGACCTGGTATTTCTGGCG
GACATGGACCTGGCCGACTTCCTGCCGCCGCCGCTGGCAGCGGAGGGAGG
CGGCGGTGCGCTTCTGTATCCTTCCTCGGGCCACGAAATCGAGGCTCTGC
CGAGCCAGGGCGGAGGGGCATCGATGAATAACGCCGCCGGCGGCATCGGT
AACTACAGCAGTAGCGAGGCCGACGGTGGCGGGTCCGCCGCCGCCGCCGC
CGCCGCCGCGCCGGCTAAGAGCAGCAGCATCAACAACGGCAACAGCAGCA
GGGGCGTTGTCGACGGACACGAGGGAGACATCGCCGACAACGTCGACGGC
TTTCTCGACGAGTTCATGGCTCTCGCCGGGGGCAGTAACGACGACGACTA
CGGCATGATGTTGGAGGAGGGGGCTGGGGGAGGGGCCCCCGACATCTCGG
CGGAAGACCTGGTATTTCTGGCGGACATGGACCTGGCCGACTTCCTGCCG
CCGCCGCTGGCAGCGGAGGGAGGCGGCGGTGCGCTTCTGTATCCTTCCTC
GGGCCACGAAATCGAGGCTCTGCCGAGCCAGGGCGGAGGGGCATCG
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