mRNA_E-fasciculatus_F_contig11754.1386.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11754.1386.1
Unique NamemRNA_E-fasciculatus_F_contig11754.1386.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11754.1386.1 vs. uniprot
Match: D8LLK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK6_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.230e-54
Identity = 120/163 (73.62%), Postives = 126/163 (77.30%), Query Frame = 1 
Query:    1 MQYWKPGEARPRGGKGGXXXXXXXXXXXSGRVGDEQGQTDGKKKK-RVDKSRGDQXXXXXXXXXXXXXXXXXXXXXXKGXGKKERRSTGSGLGGIDGEVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQDKRDKLESEFSSSYAKRLKADEDTGKDR 486
            MQYWKPGE RP GG+G XXXXXXXXXX +GRV DEQG+TD KKKK RVDKSR D                       KG GK ER STG GLGGI GEVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQ+KR+KLES FSSSYAKRLKAD+DTGKDR
Sbjct:    1 MQYWKPGEKRPGGGEGXXXXXXXXXXXGTGRVSDEQGRTDSKKKKKRVDKSRRDGGGRGSTDKGNRRSSEGVKKRVKKGKGK-ERHSTGGGLGGIKGEVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLESYFSSSYAKRLKADKDTGKDR 162
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BLAST of mRNA_E-fasciculatus_F_contig11754.1386.1 vs. uniprot
Match: A0A6H5KLI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI5_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.720e-54
Identity = 120/163 (73.62%), Postives = 127/163 (77.91%), Query Frame = 1 
Query:    1 MQYWKPGEARPRGGKGGXXXXXXXXXXXSGRVGDEQGQTDGKKKKRVDKSRGDQXXXXXXXXXXXXXXXXXXXXXXKGXGKKERRSTGSGLGGIDGEVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQDKRDKLESEFSSSYAKRLKADEDTGKDRR 489
            MQYWKPGE RP GG+GGXXXXXXXXXXXS RV D QG+TD KK  RVDKSR D+                      KG GK ER STGSGLGGI GEVSRAASKPPVAGPSQGLLAMKFMQRK QADEAQKQRQ+KR+KLES+FSSSYAKRLKAD+DTGKDRR
Sbjct:    1 MQYWKPGEKRPGGGEGGXXXXXXXXXXXSDRVSDGQGRTDSKK--RVDKSRRDEGGRGSTDKGNRRSSEGAKKRVRKGKGK-ERHSTGSGLGGIKGEVSRAASKPPVAGPSQGLLAMKFMQRKAQADEAQKQRQEKREKLESDFSSSYAKRLKADKDTGKDRR 160
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11754.1386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLK6_ECTSI2.230e-5473.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLI5_9PHAE2.720e-5473.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11754contigE-fasciculatus_F_contig11754:1645..2700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionM-phase phosphoprotein 6
Ec32 orthologEc-04_005450.1
Exons2
Model size489
Cds size489
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927688.9702563-CDS-E-fasciculatus_F_contig11754:1644..19981622927688.9702563-CDS-E-fasciculatus_F_contig11754:1644..1998Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11754 1645..1998 +
1695995650.065075-CDS-E-fasciculatus_F_contig11754:1644..19981695995650.065075-CDS-E-fasciculatus_F_contig11754:1644..1998Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11754 1645..1998 +
1622927688.983744-CDS-E-fasciculatus_F_contig11754:2565..27001622927688.983744-CDS-E-fasciculatus_F_contig11754:2565..2700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11754 2566..2700 +
1695995650.073264-CDS-E-fasciculatus_F_contig11754:2565..27001695995650.073264-CDS-E-fasciculatus_F_contig11754:2565..2700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11754 2566..2700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11754.1386.1prot_E-fasciculatus_F_contig11754.1386.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11754 1645..2700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11754.1386.1

>prot_E-fasciculatus_F_contig11754.1386.1 ID=prot_E-fasciculatus_F_contig11754.1386.1|Name=mRNA_E-fasciculatus_F_contig11754.1386.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=163bp
MQYWKPGEARPRGGKGGGGPAGGGGGSGSGRVGDEQGQTDGKKKKRVDKS
RGDQGGRGNTGKGNRRSSEDGKKWVRKGKGKKERRSTGSGLGGIDGEVSR
AASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQDKRDKLESEFSSSYAK
RLKADEDTGKDRR
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mRNA from alignment at E-fasciculatus_F_contig11754:1645..2700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11754.1386.1 ID=mRNA_E-fasciculatus_F_contig11754.1386.1|Name=mRNA_E-fasciculatus_F_contig11754.1386.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1056bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11754:1645..2700+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGTACTGGAAACCCGGAGAGGCGAGGCCGCGAGGCGGAAAGGGAGG
TGGCGGGCCAGCAGGCGGCGGCGGAGGGAGTGGGTCAGGACGCGTGGGCG
ACGAGCAAGGACAGACAGATGGCAAGAAGAAGAAGCGGGTGGACAAGAGT
CGGGGAGATCAAGGTGGCAGGGGAAACACCGGCAAAGGCAACAGAAGAAG
CAGCGAGGACGGGAAGAAGTGGGTGAGGAAGGGGAAAGGCAAGAAGGAGA
GGCGCAGCACCGGAAGCGGGTTGGGAGGCATCGACGGGGAGGTGTCGCGG
GCTGCCTCTAAGCCGCCGGTGGCTGGGCCGTCACAGGGTCTGCTAGCGAT
GAAGGTAAGGAAGCGTGGTTGCAGCGTCTGCATGGTCACGTTCATCCCTG
TGCTGTAGATTGTCGAAATGCAAAGGCGTGGTACCTCTCTGACTGCTATC
CAGCAGCCGCAGCAGCAGCAGAGATGGATCCGGTGGGCGGCCACCATGTT
ACGTGGGCGAGGTCGAGAGGTCCGTTTCCTGGTTGCGGAGTCTCGCTGCA
GAGCGGGGTACCTATCCATCGGTTGCATTGGCACAGCTCGAGTGTGCATG
TTCAAGCAGGAACATCCTACAGCCATTGTCCAGCAACAGTTGAGCGTGTA
CATGCATGATCATCAGCACGAAGAGGTCGCTGCTGGTTACCGACGGGGTT
AACACAACTCGGGCTGTTTTCCCTGACTCTAAATCGCTGCACGAGGGATG
CTTATGTTTGCTGATACTCTCTCAGAAGCAATACAAGCGCCGGCCGATTC
CCCAGTCTAGCCTGGTGTGCTGCCTTCTCGTCAAACCCTTCGGTTCGTTG
GTTGTAAATCTCTGGGTGCCTGCCCTTGCCTCCCTTGCTGCAATGCTGGT
TGCTGTCTCTGGTGCATGCAGTTCATGCAGCGCAAGGTGCAAGCGGACGA
GGCTCAGAAGCAGCGGCAGGACAAGAGAGACAAGCTGGAAAGCGAGTTCA
GCTCGTCCTACGCGAAACGGCTCAAGGCTGACGAGGACACCGGCAAAGAC
CGGCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11754:1645..2700+

>mRNA_E-fasciculatus_F_contig11754.1386.1 ID=mRNA_E-fasciculatus_F_contig11754.1386.1|Name=mRNA_E-fasciculatus_F_contig11754.1386.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11754:1645..2700+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGTACTGGAAACCCGGAGAGGCGAGGCCGCGAGGCGGAAAGGGAGG
TGGCGGGCCAGCAGGCGGCGGCGGAGGGAGTGGGTCAGGACGCGTGGGCG
ACGAGCAAGGACAGACAGATGGCAAGAAGAAGAAGCGGGTGGACAAGAGT
CGGGGAGATCAAGGTGGCAGGGGAAACACCGGCAAAGGCAACAGAAGAAG
CAGCGAGGACGGGAAGAAGTGGGTGAGGAAGGGGAAAGGCAAGAAGGAGA
GGCGCAGCACCGGAAGCGGGTTGGGAGGCATCGACGGGGAGGTGTCGCGG
GCTGCCTCTAAGCCGCCGGTGGCTGGGCCGTCACAGGGTCTGCTAGCGAT
GAAGATGCAGTACTGGAAACCCGGAGAGGCGAGGCCGCGAGGCGGAAAGG
GAGGTGGCGGGCCAGCAGGCGGCGGCGGAGGGAGTGGGTCAGGACGCGTG
GGCGACGAGCAAGGACAGACAGATGGCAAGAAGAAGAAGCGGGTGGACAA
GAGTCGGGGAGATCAAGGTGGCAGGGGAAACACCGGCAAAGGCAACAGAA
GAAGCAGCGAGGACGGGAAGAAGTGGGTGAGGAAGGGGAAAGGCAAGAAG
GAGAGGCGCAGCACCGGAAGCGGGTTGGGAGGCATCGACGGGGAGGTGTC
GCGGGCTGCCTCTAAGCCGCCGGTGGCTGGGCCGTCACAGGGTCTGCTAG
CGATGAAGTTCATGCAGCGCAAGGTGCAAGCGGACGAGGCTCAGAAGCAG
CGGCAGGACAAGAGAGACAAGCTGGAAAGCGAGTTCAGCTCGTCCTACGC
GAAACGGCTCAAGGCTGACGAGGACACCGGCAAAGACCGGCGATTCATGC
AGCGCAAGGTGCAAGCGGACGAGGCTCAGAAGCAGCGGCAGGACAAGAGA
GACAAGCTGGAAAGCGAGTTCAGCTCGTCCTACGCGAAACGGCTCAAGGC
TGACGAGGACACCGGCAAAGACCGGCGA
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